Non-Coding RNA Search

Ss1.1-Pig4-TMW8058B19.5.5

Sequence:


               
               CGCCGCGCAGAGCCGGAGCAGGAGCCACGGCCGAGTGGAGGGAGGAGGAGGAGGAGGAGG
TGGAGGAGGCGCCGGACCGGGGGGATTGTCAGTATTTAAACAGACCACATCATGCGTGAG
TACAAGCTAGTGGTCCTTGGTTCAGGAGGCGTGGGGAAGTCTGCTCTGACCGTTCAATTT
GTTCAGGGAATTTTTGTGGAAAAATATGACCCAACGATAGAAGATTCCTACAGAAAGCAA
GTTGAAGTAGACTGCCAACAGTGTATGCTCGAAATCCTGGATACAGCGGGAACGGAGCAA
TTTACAGCGATGAGAGATTTGTATATGAAGAATGGCCAAGGGTTTGCACTAGTATATTCT
ATTACAGCTCAGTCCACGTTTAATGACTTACAGGACCTGAGGGAACAGATTTTACGGGTT
AAGGACACAGAAGATGTTCCAATGATTTTGGTTGGCAATAAATGTGACCTGGAAGATGAG
CGAGTAGTTGGCAAAGAACAGGGTCAGAATTTAGCAAGACAGTGGTGTAACTGTGCCTTT
TTAGAATCTTCTGCAAAGTCAAAGATCAACGTTAATGAGATATTTTATGACCTGGTCAGA
CAGATAAATAGGAAAACACCAGTGGAAAAGAAGAAGCCCAAAAAGAAATCATGTCTGCTG
CTTTAGACCTGCAGTAAGCAGCAGCTCTGAGCCAGATTTACAGGAATGAAGAACTGTTGC
CTAATTGGAAAGTGCCAGCATTCCAGACTTCAAAAAATAAATCTGAAGAGGCTTCTTCTG
TTTTATATATTATGTGAAGAATTTAGATCTTATATTGGTTTGCACAAGTTCCCTGGAGAA
AAAAAAAATTGCTCTGTGTATATCTCTTGGAAAATAAGACAATAGTATTTCTCCTTTGCA
ATAGCAGTTATAACAGATGTGAAAATAAATATACTTGACTCTAATATGATTATACAAAAG
AGCATGGATGCATTTCAAATGTTAGATATTGCTACTATAATCAGATGATTTCATATTGAC
CTTTTTATCATGTTTCTTCCCTGTCAAGCACTAAAAAGTTGAACCATTATACTTTATATC
TGTAATGATATAGATTATGAAAATTTCCCCTCAAACTCATTGCAGCAGATAACTTTTTTG
AGTCATTGACTTCATTTTATATTTAAAAAATTATGAAATATCATTCTGTCATTATATTCT
AATTAAAATTGTTTGTGCATAATGCTTTGGAAAAATGGGTCTTTTATAGGAAAAAACTGG
GATAACTGATTTCTATGGCTTTCAAAGCTAAAATATATAATATACTAAACCAACTCTAAT
ATTGCTTCTTGTGTTTTACTGTCAGATTAAATTACAGCTTTTATGGATGATTAAATTTTA
GTACATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGCGCAGAGCCGGAGCAGGAGCCACGGCCGAGTGGAGGGAGGAGGAGGAGGAGGAGG
TGGAGGAGGCGCCGGACCGGGGGGATTGTCAGTATTTAAACAGACCACATCATGCGTGAG
TACAAGCTAGTGGTCCTTGGTTCAGGAGGCGTGGGGAAGTCTGCTCTGACCGTTCAATTT
GTTCAGGGAATTTTTGTGGAAAAATATGACCCAACGATAGAAGATTCCTACAGAAAGCAA
GTTGAAGTAGACTGCCAACAGTGTATGCTCGAAATCCTGGATACAGCGGGAACGGAGCAA
TTTACAGCGATGAGAGATTTGTATATGAAGAATGGCCAAGGGTTTGCACTAGTATATTCT
ATTACAGCTCAGTCCACGTTTAATGACTTACAGGACCTGAGGGAACAGATTTTACGGGTT
AAGGACACAGAAGATGTTCCAATGATTTTGGTTGGCAATAAATGTGACCTGGAAGATGAG
CGAGTAGTTGGCAAAGAACAGGGTCAGAATTTAGCAAGACAGTGGTGTAACTGTGCCTTT
TTAGAATCTTCTGCAAAGTCAAAGATCAACGTTAATGAGATATTTTATGACCTGGTCAGA
CAGATAAATAGGAAAACACCAGTGGAAAAGAAGAAGCCCAAAAAGAAATCATGTCTGCTG
CTTTAGACCTGCAGTAAGCAGCAGCTCTGAGCCAGATTTACAGGAATGAAGAACTGTTGC
CTAATTGGAAAGTGCCAGCATTCCAGACTTCAAAAAATAAATCTGAAGAGGCTTCTTCTG
TTTTATATATTATGTGAAGAATTTAGATCTTATATTGGTTTGCACAAGTTCCCTGGAGAA
AAAAAAAATTGCTCTGTGTATATCTCTTGGAAAATAAGACAATAGTATTTCTCCTTTGCA
ATAGCAGTTATAACAGATGTGAAAATAAATATACTTGACTCTAATATGATTATACAAAAG
AGCATGGATGCATTTCAAATGTTAGATATTGCTACTATAATCAGATGATTTCATATTGAC
CTTTTTATCATGTTTCTTCCCTGTCAAGCACTAAAAAGTTGAACCATTATACTTTATATC
TGTAATGATATAGATTATGAAAATTTCCCCTCAAACTCATTGCAGCAGATAACTTTTTTG
AGTCATTGACTTCATTTTATATTTAAAAAATTATGAAATATCATTCTGTCATTATATTCT
AATTAAAATTGTTTGTGCATAATGCTTTGGAAAAATGGGTCTTTTATAGGAAAAAACTGG
GATAACTGATTTCTATGGCTTTCAAAGCTAAAATATATAATATACTAAACCAACTCTAAT
ATTGCTTCTTGTGTTTTACTGTCAGATTAAATTACAGCTTTTATGGATGATTAAATTTTA
GTACATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5QPH6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5QPH6_HUMAN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               108-750, gnl|bosTau2|chr17 (30975123-30975761)
               

               
               108-750, gnl|Hg17|chr5 (75505768-75505134)
               

               
               108-750, gnl|Mm7|chr10 (117336025-117327106)
               


               
               853-1313, gnl|bosTau2|chr13 (59906529-59906968)
               

               
               853-1313, gnl|Hg17|chr20 (47992371-47991850)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-750, gnl|bosTau2|chr17 (30975123-30975761)
               

               
               108-750, gnl|Hg17|chr5 (75505768-75505134)
               

               
               108-750, gnl|Mm7|chr10 (117336025-117327106)
               


               
               853-1313, gnl|bosTau2|chr13 (59906529-59906968)
               

               
               853-1313, gnl|Hg17|chr20 (47992371-47991850)

Expressed library(ies): 51 entry(ies)

More info

Expressed library(ies): 51 entry(ies)

Help | Less info


               
               kid (0.908147)
               

               
               liv (0.877706)
               

               
               bfe (0.749288)
               

               
               fco (0.628832)
               

               
               sme (0.610874)
               

               
               gul (0.532765)
               

               
               ret (0.514933)
               

               
               sug (0.509165)
               

               
               tbr (0.462535)
               

               
               cbl (0.45919)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               nmm (0.398406)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               med (0.232504)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               ctl (0.153069)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 51 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.908147)
               

               
               liv (0.877706)
               

               
               bfe (0.749288)
               

               
               fco (0.628832)
               

               
               sme (0.610874)
               

               
               gul (0.532765)
               

               
               ret (0.514933)
               

               
               sug (0.509165)
               

               
               tbr (0.462535)
               

               
               cbl (0.45919)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               nmm (0.398406)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               med (0.232504)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               ctl (0.153069)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	108-750, gnl\|bosTau2\|chr17 (30975123-30975761)
	108-750, gnl\|Hg17\|chr5 (75505768-75505134)
	108-750, gnl\|Mm7\|chr10 (117336025-117327106)

	853-1313, gnl\|bosTau2\|chr13 (59906529-59906968)
	853-1313, gnl\|Hg17\|chr20 (47992371-47991850)

	kid (0.908147)
	liv (0.877706)
	bfe (0.749288)
	fco (0.628832)
	sme (0.610874)
	gul (0.532765)
	ret (0.514933)
	sug (0.509165)
	tbr (0.462535)
	cbl (0.45919)
	lin (0.436808)
	spl (0.429553)
	amn (0.417711)
	nmm (0.398406)
	col (0.390016)
	elu (0.385356)
	fty (0.351679)
	vin (0.332557)
	cki (0.330469)
	ski (0.29347)
	hyp (0.285673)
	pla (0.267344)
	thg (0.253582)
	med (0.232504)
	spc (0.226732)
	hea (0.204499)
	jej (0.197844)
	aor (0.195274)
	ldo (0.194005)
	nlu (0.191681)
	cmu (0.186393)
	mgm (0.180343)
	ton (0.1755)
	duo (0.172801)
	mcp (0.170648)
	nje (0.16592)
	ctl (0.153069)
	isp (0.150376)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	ste (0.135208)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	jca (0.11396)
	cty (0.10408)