Non-Coding RNA Search

Ss1.1-Pig4-TMW8058B22.5

Sequence:


               
               AAGGAGATATGAAAATTGTCAACCTGGACAATGATCTAGAGGTTTTAGCCTCTTCTCCCA
CGGAATGTACTGGGAATTTGAATGGTGCCTACCTGAAGGCAGGGAGCAACGGGGAAGTGG
ACATTTCCAGTGGTTTTAAGAACCTTAACTTGAATGCTGCTCTTGAACCTGACGAGATAA
ATATAGAGATTCTGAATGATGATCTTACTCCTGGGGCGAAGGTATATGAGGTTGTAAATG
AAGATCCAGAAACTGCTTTCTGTACTCTTGCAAACAGGGAAGCTTTCAATACGGATGAGT
GTTCAATCCAACATTGTTTATATCAGTTCACTCGAAATGAGAAACTTCGAGATGCTAATA
AACTGCTTTGTGAAGTGTGCACGCGGAGACAGTATAGTGGACCAAAGGCAAATATAAAAG
GTGAAAGGAAACATGTTTACACCAATGCTAAGAAGCAGATGCTAATTTCTCTTGCTCCTC
CTGTTCTCACTCTTCATTTAAAGAGATTTCAGCAGGCTGGTTTTAACCTACGCAAAGTTA
ACAAACACATAAAATTTCCAGAAATCTTAGATTTGGCTCCTTTTTGTACCCTTAAGTGTA
AGAATGTTGCTGAAGAAAATACAAGGGTACTGTACTCCTTATATGGAGTCGTTGAACACA
GTGGTACCATGCGGTCAGGGCATTATACTGCCTATGCCAAGGCAAGAACTGCAAACAGCC
ATCTCTCTAATCTTGTTCTCCACGGTGATATTCCACAAGATTTTGAAATGGAGTCAACCA
AAGGGCAGTGGTTTCACATCAGCGACACACATGTGCAAGCTGTGCCTACAACTAAAGTAC
TAAACTCACAGGCTTACCTCCTATTTTATGAGAGAATACTGTAACAATTTCAAAAAACGC
TTTCTCTGGAAACATGTTTATGGCTTTTATAATGGCTGTAATAAAAAAAAAAGTAAAGAC
TAACTGTAAATCATGTTCACTTAAAATTAAATACATGCCAGAAGAAATCATGTTTATTGA
ATACTAAAGGGAAAATACTTAAAAATTTACAGTGGTTTTGTATTGTAATGGTTTTTATTC
CTGCTTCCAGTTTCTGGAAAGGAGTCTGAATTACTAAAGTCCTCTGTGATTAATATGTTT
TTTGGGTGGTGGTTTGCAACACATCAATAAAATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAGATATGAAAATTGTCAACCTGGACAATGATCTAGAGGTTTTAGCCTCTTCTCCCA
CGGAATGTACTGGGAATTTGAATGGTGCCTACCTGAAGGCAGGGAGCAACGGGGAAGTGG
ACATTTCCAGTGGTTTTAAGAACCTTAACTTGAATGCTGCTCTTGAACCTGACGAGATAA
ATATAGAGATTCTGAATGATGATCTTACTCCTGGGGCGAAGGTATATGAGGTTGTAAATG
AAGATCCAGAAACTGCTTTCTGTACTCTTGCAAACAGGGAAGCTTTCAATACGGATGAGT
GTTCAATCCAACATTGTTTATATCAGTTCACTCGAAATGAGAAACTTCGAGATGCTAATA
AACTGCTTTGTGAAGTGTGCACGCGGAGACAGTATAGTGGACCAAAGGCAAATATAAAAG
GTGAAAGGAAACATGTTTACACCAATGCTAAGAAGCAGATGCTAATTTCTCTTGCTCCTC
CTGTTCTCACTCTTCATTTAAAGAGATTTCAGCAGGCTGGTTTTAACCTACGCAAAGTTA
ACAAACACATAAAATTTCCAGAAATCTTAGATTTGGCTCCTTTTTGTACCCTTAAGTGTA
AGAATGTTGCTGAAGAAAATACAAGGGTACTGTACTCCTTATATGGAGTCGTTGAACACA
GTGGTACCATGCGGTCAGGGCATTATACTGCCTATGCCAAGGCAAGAACTGCAAACAGCC
ATCTCTCTAATCTTGTTCTCCACGGTGATATTCCACAAGATTTTGAAATGGAGTCAACCA
AAGGGCAGTGGTTTCACATCAGCGACACACATGTGCAAGCTGTGCCTACAACTAAAGTAC
TAAACTCACAGGCTTACCTCCTATTTTATGAGAGAATACTGTAACAATTTCAAAAAACGC
TTTCTCTGGAAACATGTTTATGGCTTTTATAATGGCTGTAATAAAAAAAAAAGTAAAGAC
TAACTGTAAATCATGTTCACTTAAAATTAAATACATGCCAGAAGAAATCATGTTTATTGA
ATACTAAAGGGAAAATACTTAAAAATTTACAGTGGTTTTGTATTGTAATGGTTTTTATTC
CTGCTTCCAGTTTCTGGAAAGGAGTCTGAATTACTAAAGTCCTCTGTGATTAATATGTTT
TTTGGGTGGTGGTTTGCAACACATCAATAAAATGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13435422|gb|AAH04577.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13435422|gb|AAH04577.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-422, gnl|bosTau2|chr1 (6506291-6505870)
               

               
               1-422, gnl|Hg17|chr21 (29341103-29341515)
               

               
               1-422, gnl|Mm7|chr16 (87521324-87521739)
               


               
               758-1176, gnl|bosTau2|chr1 (6500910-6500504)
               

               
               758-1176, gnl|Hg17|chr21 (29348256-29348669)
               

               
               758-1176, gnl|Mm7|chr16 (87525053-87525452)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-422, gnl|bosTau2|chr1 (6506291-6505870)
               

               
               1-422, gnl|Hg17|chr21 (29341103-29341515)
               

               
               1-422, gnl|Mm7|chr16 (87521324-87521739)
               


               
               758-1176, gnl|bosTau2|chr1 (6500910-6500504)
               

               
               758-1176, gnl|Hg17|chr21 (29348256-29348669)
               

               
               758-1176, gnl|Mm7|chr16 (87525053-87525452)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cte (0.87822)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-422, gnl\|bosTau2\|chr1 (6506291-6505870)
	1-422, gnl\|Hg17\|chr21 (29341103-29341515)
	1-422, gnl\|Mm7\|chr16 (87521324-87521739)

	758-1176, gnl\|bosTau2\|chr1 (6500910-6500504)
	758-1176, gnl\|Hg17\|chr21 (29348256-29348669)
	758-1176, gnl\|Mm7\|chr16 (87525053-87525452)

	cte (0.87822)
	sag (0.182715)
	sin (0.174948)
	nco (0.161734)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	pty (0.142714)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	eje (0.0988338)
	ldo (0.0970026)