Non-Coding RNA Search

Ss1.1-Pig4-TMW8058C01.3

Sequence:


               
               GTGCTACTCTCCCCCCAACAGTACCATTGCGTTATCCAGAATGTATACTAATTTAGCATA
ATAGTTGAGTTATATATGGAGGAAAATCATTTTTGGGTTTTGGTGTCCTGATGCAGAATT
AGCCCATTTTCTGTAATCTGCAGAAGATGTGTCAACATAACAAACATCATGGCGTTGAAC
AGGATTTTCGAGAATGTATCGTGCATTTGGTTCAGACTTAGAGATATGTATAGGAAAAAT
TCTACTGTAATTATAGCCTTATTTTAATAATGGAAAAGAAAAGTCAAAATAGAGACTTTG
ATCATGTTCATGAACATGTACTTGAACACAAGTTTTGTAACAATGAGACACTGTAATGAT
TTACACTGAATCACCATTGCACTGTTGATATAGTGTAGAGAAACCATTATAGAAATGGTA
ACATCCTACAAAAATGTGTATTATTTTAACATGCTGTCATTAGAGTTTAGCTTTTTAAAA
TATTGTGAGCAAAGAAAGCATTGATTCACCCATTTCCTTGTACCTTTTTAGCAGATTTAT
AAAAGAGTATAGTACTTAGCCTCACCAATCATGAGAAAATTTACTATTTTTTCAAACTTT
TCCCTAGAAACAAGGAACAACCAAAAGCATATAATACTGTGGTAGTTTCATTGTGGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTACTCTCCCCCCAACAGTACCATTGCGTTATCCAGAATGTATACTAATTTAGCATA
ATAGTTGAGTTATATATGGAGGAAAATCATTTTTGGGTTTTGGTGTCCTGATGCAGAATT
AGCCCATTTTCTGTAATCTGCAGAAGATGTGTCAACATAACAAACATCATGGCGTTGAAC
AGGATTTTCGAGAATGTATCGTGCATTTGGTTCAGACTTAGAGATATGTATAGGAAAAAT
TCTACTGTAATTATAGCCTTATTTTAATAATGGAAAAGAAAAGTCAAAATAGAGACTTTG
ATCATGTTCATGAACATGTACTTGAACACAAGTTTTGTAACAATGAGACACTGTAATGAT
TTACACTGAATCACCATTGCACTGTTGATATAGTGTAGAGAAACCATTATAGAAATGGTA
ACATCCTACAAAAATGTGTATTATTTTAACATGCTGTCATTAGAGTTTAGCTTTTTAAAA
TATTGTGAGCAAAGAAAGCATTGATTCACCCATTTCCTTGTACCTTTTTAGCAGATTTAT
AAAAGAGTATAGTACTTAGCCTCACCAATCATGAGAAAATTTACTATTTTTTCAAACTTT
TCCCTAGAAACAAGGAACAACCAAAAGCATATAATACTGTGGTAGTTTCATTGTGGGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-429, + strand, RNAz p=0.901174

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-429, + strand, RNAz p=0.901174

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr7 (19332339-19333004)
               

               
               1-660, gnl|Hg17|chr5 (129101126-129101789)
               

               
               1-660, gnl|Mm7|chr18 (59442322-59442976)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr7 (19332339-19333004)
               

               
               1-660, gnl|Hg17|chr5 (129101126-129101789)
               

               
               1-660, gnl|Mm7|chr18 (59442322-59442976)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.170503)
               

               
               isp (0.150376)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	1-660, gnl\|bosTau2\|chr7 (19332339-19333004)
	1-660, gnl\|Hg17\|chr5 (129101126-129101789)
	1-660, gnl\|Mm7\|chr18 (59442322-59442976)