Non-Coding RNA Search

Ss1.1-Pig4-TMW8058C05.5

Sequence:


               
               GTGAAGTTCATGAAAGTGCAAGTGACAAGGATAGTTTAAGCAAAGGTAAACTTCCCAAAA
GAGAGGAACGGTCTGAAAACAAAAAACCTATAAAGCCTCAATCTTTCAAGCCTGAAAATC
ATGTCCGAATAGATAATAGACCTCTAGAAAAACCTTTTGTAAGGGATGATGATAAATCTA
AACCAGGCTTCCTTCCTAAAGGAGAACCTACAAGGCGAGGCAGAGGGGGAACATTCAGAC
GTGGTGGAAGGGATCCTGGAGGTCGCCCGTCACGCCCTTCCACCTTACGAAGACCTGCCT
ATCGGGACAATCAGTGGAACCCAAGGCAGGCAGAAGTTCCTAAACCAGATGATGGAGAGC
CACCAAGAAGACATGAGCAGTTTATTCCTATACCAGCAGATAAACGGCCTCCAAAATTTG
AGCGAAAATTTGACCCAGCTAGAGAGAGGCCCCGAAGGCAGCGTCCTACCAGACCTCCAA
GGCAAGATAAGCCTCCCCGATTTAGACGGCTAAGGGAGAGGGAGGCTGCTTCTAAAACCA
GCGAGGTGGCAGTGCCTACAAATGGTACAGTTAATAATGTAGTTCAAGAACCAGTTAATA
CTGCTGGGGATATTTCTGGAAATAAGACACCAGACTTATCTAATCAGAACTCTTCAGATC
AGGCAAATGAAGAATGGGAAACAGCTTCTGAAAGCAGTGATTTCAATGAGAGGCGCGAAA
GGGATGAAAAAAAAAATGCTGATTTGAATGCACAGGTGGTTGTAAAGGCTGGAGAGAATG
TTTTACCTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAGTTCATGAAAGTGCAAGTGACAAGGATAGTTTAAGCAAAGGTAAACTTCCCAAAA
GAGAGGAACGGTCTGAAAACAAAAAACCTATAAAGCCTCAATCTTTCAAGCCTGAAAATC
ATGTCCGAATAGATAATAGACCTCTAGAAAAACCTTTTGTAAGGGATGATGATAAATCTA
AACCAGGCTTCCTTCCTAAAGGAGAACCTACAAGGCGAGGCAGAGGGGGAACATTCAGAC
GTGGTGGAAGGGATCCTGGAGGTCGCCCGTCACGCCCTTCCACCTTACGAAGACCTGCCT
ATCGGGACAATCAGTGGAACCCAAGGCAGGCAGAAGTTCCTAAACCAGATGATGGAGAGC
CACCAAGAAGACATGAGCAGTTTATTCCTATACCAGCAGATAAACGGCCTCCAAAATTTG
AGCGAAAATTTGACCCAGCTAGAGAGAGGCCCCGAAGGCAGCGTCCTACCAGACCTCCAA
GGCAAGATAAGCCTCCCCGATTTAGACGGCTAAGGGAGAGGGAGGCTGCTTCTAAAACCA
GCGAGGTGGCAGTGCCTACAAATGGTACAGTTAATAATGTAGTTCAAGAACCAGTTAATA
CTGCTGGGGATATTTCTGGAAATAAGACACCAGACTTATCTAATCAGAACTCTTCAGATC
AGGCAAATGAAGAATGGGAAACAGCTTCTGAAAGCAGTGATTTCAATGAGAGGCGCGAAA
GGGATGAAAAAAAAAATGCTGATTTGAATGCACAGGTGGTTGTAAAGGCTGGAGAGAATG
TTTTACCTCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29748070|gb|AAH50871.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29748070|gb|AAH50871.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               554-713, + strand, RNAz p=0.842001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               554-713, + strand, RNAz p=0.842001

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr16 (27308140-27308934)
               

               
               1-792, gnl|Hg17|chr1 (168242075-168242872)
               

               
               1-792, gnl|Mm7|chr1 (162666547-162665753)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr16 (27308140-27308934)
               

               
               1-792, gnl|Hg17|chr1 (168242075-168242872)
               

               
               1-792, gnl|Mm7|chr1 (162666547-162665753)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-792, gnl\|bosTau2\|chr16 (27308140-27308934)
	1-792, gnl\|Hg17\|chr1 (168242075-168242872)
	1-792, gnl\|Mm7\|chr1 (162666547-162665753)