Non-Coding RNA Search

Ss1.1-Pig4-TMW8058D03.5

Sequence:


               
               CTGTATTTTTTTTTTTTTCTTTTTTTTGGACTCGCTCCTAGCATATGAAAGTTCCTATAC
CAGGAATTGAACCTGTGCCACAGCAGGGACTCGAGCCACTCCTGTGACAGCGCCAGATCC
TTAATCCACTGAGCCACATGGGAACTTCTTAGCTGTATTTTTAAAGGTAAAGTTGCTATG
ATATTTAATGTATGTAGAGAAAGTGAGAAATGAAGAAGTGGCAGATTAGTTAGAGATTAG
AATTAGGTGAGCTTTGAAAAATGATGTCATATATGGGTTCTAGCACATTTCACCACAAAA
TCTCTGGAGGAGGTTAGTTAGCTGTACCCTGGTTAATTTGGGATAATGGATATTTTGGAC
TAATTTTGACAATGTTATTACATATTTGAGGATTAGTACACATGTGGCATATGGATTGGT
GGGAAAAATGAAAACCTCAACTATACAGTTTATAATCCATAATCCATTTTATAATGTTCA
AAGATAAGGTTCCATTATTGATAGTATTAAATAAAGCTACCCTGAACATTGATGGGTCAA
AACATTTTACTGGATTACCGAATGTTAACTCAGAACTTGTTTTGATTCTTGGATGTACAT
AATGCTGCCAGCTAACTATTTTACTTTCTTGTTTACATGTGGGGTTTTGTTTTTAATTAT
TTTGTTAAAAAAATCCCAATAAAAATGTATTACTTACAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTATTTTTTTTTTTTTCTTTTTTTTGGACTCGCTCCTAGCATATGAAAGTTCCTATAC
CAGGAATTGAACCTGTGCCACAGCAGGGACTCGAGCCACTCCTGTGACAGCGCCAGATCC
TTAATCCACTGAGCCACATGGGAACTTCTTAGCTGTATTTTTAAAGGTAAAGTTGCTATG
ATATTTAATGTATGTAGAGAAAGTGAGAAATGAAGAAGTGGCAGATTAGTTAGAGATTAG
AATTAGGTGAGCTTTGAAAAATGATGTCATATATGGGTTCTAGCACATTTCACCACAAAA
TCTCTGGAGGAGGTTAGTTAGCTGTACCCTGGTTAATTTGGGATAATGGATATTTTGGAC
TAATTTTGACAATGTTATTACATATTTGAGGATTAGTACACATGTGGCATATGGATTGGT
GGGAAAAATGAAAACCTCAACTATACAGTTTATAATCCATAATCCATTTTATAATGTTCA
AAGATAAGGTTCCATTATTGATAGTATTAAATAAAGCTACCCTGAACATTGATGGGTCAA
AACATTTTACTGGATTACCGAATGTTAACTCAGAACTTGTTTTGATTCTTGGATGTACAT
AATGCTGCCAGCTAACTATTTTACTTTCTTGTTTACATGTGGGGTTTTGTTTTTAATTAT
TTTGTTAAAAAAATCCCAATAAAAATGTATTACTTACAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               149-694, gnl|bosTau2|chr1 (19412617-19413178)
               

               
               149-694, gnl|Hg17|chr3 (87386778-87387324)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               149-694, gnl|bosTau2|chr1 (19412617-19413178)
               

               
               149-694, gnl|Hg17|chr3 (87386778-87387324)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               spc (0.340097)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.340097)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

	149-694, gnl\|bosTau2\|chr1 (19412617-19413178)
	149-694, gnl\|Hg17\|chr3 (87386778-87387324)

	spc (0.340097)
	fbs (0.175346)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)