Non-Coding RNA Search

Ss1.1-Pig4-TMW8058D06.3

Sequence:


               
               CTTTTTCTTCTGAACAGTCTTTTCTTTCAACCTCAAGATTGAGACCATCATGGCCATCTT
TCTCCACTTCCACATGGCCTTGATGCAGTTTTGCATTGATATCACATTCTGCGTGGCCAT
GATTTACACCACTCATAAGCCAAGCAAGTGAAGCTGTAAAATGCACTGTCTTTATCCGCA
CTGCTTGGACCCTGTTTGTTTCTCCAGCTTCCAATCTGGCTTTTACGCCTGGAATTCTAG
CTTTGGGTAGGAGCCTGTTCTACCCACTTTGCTTTGCAGTACAGGCATATGTATAGCCTG
TGGACAGTTGCTGAGCATTAGTGACATCAACTGAGAACAGCAGTGGGCCTCTTGGCCTGT
GTGATTTATGTGACTCCATTGCTCTTGCACCTCTGGCCACCTATTGCTTCTTGCTACTGG
CTCTGCCCTGGGCTGCCACGCACTGGATGAACCTCTTCTGGACCAGTGTCAACCCCTCTC
TCATCTCTGGTAAACAATCTCCAGAACTGATGATGAACCCAGGTTTATTGCCAGCACACA
AAAGACCCTTCCATTCTTCTCCCCAAAAGACCTCTATTCCTCACCTCCTCTCTTCCCTTT
ATTCCCATTATCCAGGACCCTGCTGTTGTCGGGCAAGGGGTTGTGATGATAAGCTAGACC
TGTCCTTATGGCAGAAGTAAGGGTGGTATCTGTTCAAAGTACCAGGCATTCTCAGCCCCA
ACTAGTGAATTCACACAAAACCTAGGTACCTCTTTGTGCCTCCTTTTTCATCCTGAACAT
GATTAAGTGCCAGGATAGCAGTACACTTTATCCATGCTCTTCTATCTCTTAAAAGAAGTG
ATAGCTCATAAAAATCTGTAAAATGAAGTATTTTAGTTTAATTTGGTTCTTTCCATTATT
TCGAGGAACAGGTTGTCTGTAGTATAGACTGCCAGAGCTCTTCTTTCCCTCTGCTCTCCA
CTCCTTTTAACAACACCTAGAATATTTAAAGGTAGACAGATGGAATGAAAGTGATATCTA
GGTCATAATGGATAGAAGAACTAAGGAGACTGTGATGGGTACCAAAGGAGGGAAAACCAA
AGAACACAAGTAAAAATGAGCCAGGTTAAAAAATTGGGCCAAAAATTAAGACTGACTGAG
AGCCATCAAGGGAATTTTGTCACTGGTATTGGGAGGAGAAATCTTTTTCTCAGGATTAAC
ATGGGAGAATTGAAGGGCCCGAATGTTAAATTGCGTAGAGAAGAGTTCTTTAAAAAAACA
CAAAATAACTTTGGGTACTCTTCTCTCTTGTTTTCATTTGACTTAATTTATAAGGAAGAT
TAATAATTTGTCTCTTATTTCACTTGTGTATGGTAAAATCCTGCTATTTTCCCTGGTTTC
TGCTGAGAAAATTGAGCTGTATAGGCTTCCTTTTGCTTTCAGTTGGAAACATTTGGAAAA
ATAACAGTCTTATTTTCCTGTACAATATAGAGACTTTAACTGAATATGCCTAATGATTTT
CAACTTATTATTTCTGTTAAAAAGTGTATCCTTAGAAATATAATTTGAAAAACTTGTATT
TTTAGGACTTTGGAAACTGTTGTCATGGAAAAATAACTCACTAAAAATGTGTGGCTTAAT
TGTCTTACTTGATACTTTGCCCTGTTAGCAACTTAGTAATTGATGTGTCCCTTTTCCTAA
ATAGTCTAAATACTTATGAGATGGCTCTGTCAGGTTGAAGGTATATCGTTGGTATATTTG
TCTTTCCTTATATGCATGATGGTAAAATAAAAAGCATGTTACTCTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTCTTCTGAACAGTCTTTTCTTTCAACCTCAAGATTGAGACCATCATGGCCATCTT
TCTCCACTTCCACATGGCCTTGATGCAGTTTTGCATTGATATCACATTCTGCGTGGCCAT
GATTTACACCACTCATAAGCCAAGCAAGTGAAGCTGTAAAATGCACTGTCTTTATCCGCA
CTGCTTGGACCCTGTTTGTTTCTCCAGCTTCCAATCTGGCTTTTACGCCTGGAATTCTAG
CTTTGGGTAGGAGCCTGTTCTACCCACTTTGCTTTGCAGTACAGGCATATGTATAGCCTG
TGGACAGTTGCTGAGCATTAGTGACATCAACTGAGAACAGCAGTGGGCCTCTTGGCCTGT
GTGATTTATGTGACTCCATTGCTCTTGCACCTCTGGCCACCTATTGCTTCTTGCTACTGG
CTCTGCCCTGGGCTGCCACGCACTGGATGAACCTCTTCTGGACCAGTGTCAACCCCTCTC
TCATCTCTGGTAAACAATCTCCAGAACTGATGATGAACCCAGGTTTATTGCCAGCACACA
AAAGACCCTTCCATTCTTCTCCCCAAAAGACCTCTATTCCTCACCTCCTCTCTTCCCTTT
ATTCCCATTATCCAGGACCCTGCTGTTGTCGGGCAAGGGGTTGTGATGATAAGCTAGACC
TGTCCTTATGGCAGAAGTAAGGGTGGTATCTGTTCAAAGTACCAGGCATTCTCAGCCCCA
ACTAGTGAATTCACACAAAACCTAGGTACCTCTTTGTGCCTCCTTTTTCATCCTGAACAT
GATTAAGTGCCAGGATAGCAGTACACTTTATCCATGCTCTTCTATCTCTTAAAAGAAGTG
ATAGCTCATAAAAATCTGTAAAATGAAGTATTTTAGTTTAATTTGGTTCTTTCCATTATT
TCGAGGAACAGGTTGTCTGTAGTATAGACTGCCAGAGCTCTTCTTTCCCTCTGCTCTCCA
CTCCTTTTAACAACACCTAGAATATTTAAAGGTAGACAGATGGAATGAAAGTGATATCTA
GGTCATAATGGATAGAAGAACTAAGGAGACTGTGATGGGTACCAAAGGAGGGAAAACCAA
AGAACACAAGTAAAAATGAGCCAGGTTAAAAAATTGGGCCAAAAATTAAGACTGACTGAG
AGCCATCAAGGGAATTTTGTCACTGGTATTGGGAGGAGAAATCTTTTTCTCAGGATTAAC
ATGGGAGAATTGAAGGGCCCGAATGTTAAATTGCGTAGAGAAGAGTTCTTTAAAAAAACA
CAAAATAACTTTGGGTACTCTTCTCTCTTGTTTTCATTTGACTTAATTTATAAGGAAGAT
TAATAATTTGTCTCTTATTTCACTTGTGTATGGTAAAATCCTGCTATTTTCCCTGGTTTC
TGCTGAGAAAATTGAGCTGTATAGGCTTCCTTTTGCTTTCAGTTGGAAACATTTGGAAAA
ATAACAGTCTTATTTTCCTGTACAATATAGAGACTTTAACTGAATATGCCTAATGATTTT
CAACTTATTATTTCTGTTAAAAAGTGTATCCTTAGAAATATAATTTGAAAAACTTGTATT
TTTAGGACTTTGGAAACTGTTGTCATGGAAAAATAACTCACTAAAAATGTGTGGCTTAAT
TGTCTTACTTGATACTTTGCCCTGTTAGCAACTTAGTAATTGATGTGTCCCTTTTCCTAA
ATAGTCTAAATACTTATGAGATGGCTCTGTCAGGTTGAAGGTATATCGTTGGTATATTTG
TCTTTCCTTATATGCATGATGGTAAAATAAAAAGCATGTTACTCTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1348-1464, + strand, RNAz p=0.616314

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1348-1464, + strand, RNAz p=0.616314

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-1800, gnl|bosTau2|chr5 (62728241-62730039)
               


               
               11-561, gnl|bosTau2|chr11 (26096026-26095481)
               

               
               11-561, gnl|Hg17|chr2 (54393583-54393026)
               


               
               1308-1797, gnl|bosTau2|chr11 (26094421-26093931)
               

               
               1308-1797, gnl|Hg17|chr2 (54392253-54391350)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1800, gnl|bosTau2|chr5 (62728241-62730039)
               


               
               11-561, gnl|bosTau2|chr11 (26096026-26095481)
               

               
               11-561, gnl|Hg17|chr2 (54393583-54393026)
               


               
               1308-1797, gnl|bosTau2|chr11 (26094421-26093931)
               

               
               1308-1797, gnl|Hg17|chr2 (54392253-54391350)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               fco (0.628832)
               

               
               ret (0.514933)
               

               
               tra (0.492368)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               ret (0.514933)
               

               
               tra (0.492368)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-1800, gnl\|bosTau2\|chr5 (62728241-62730039)

	11-561, gnl\|bosTau2\|chr11 (26096026-26095481)
	11-561, gnl\|Hg17\|chr2 (54393583-54393026)

	1308-1797, gnl\|bosTau2\|chr11 (26094421-26093931)
	1308-1797, gnl\|Hg17\|chr2 (54392253-54391350)

	fco (0.628832)
	ret (0.514933)
	tra (0.492368)
	rec (0.346141)
	vin (0.332557)
	kid (0.259471)
	pgl (0.236967)
	med (0.232504)
	tes (0.207814)
	fcc (0.197785)
	sag (0.182715)
	mgm (0.180343)
	mga (0.160205)
	bfe (0.149858)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	lyg (0.133103)
	bla (0.124347)
	cly (0.120642)
	clu (0.119646)
	ebs (0.118301)
	eje (0.0988338)
	ldo (0.0970026)