Non-Coding RNA Search

Ss1.1-Pig4-TMW8058D10.3

Sequence:


               
               TGCTGAGCCACCTGCCTTCTGCAGGGGCCCTTCCTTTTCGGGGGGGGGGGGGCGGTGACG
TTAGCACCTCGGCGGTTGTGTGTCACGTTGTGTTTTTAGCAGAGATTGGGAACACTGGAG
AACTCTTAATTCCTCAGCTCTCAGGGCCTCTGTGCTCTCAGTGTTCCCAGAAACTCCATA
ATGAATGGAATTCACTTCCACACATGGTTTGTTCAAGCACACTTAATAAGTAGCCTGTTT
TTTTAAATGTTTTTAAAATGTAAATATTTGGATGAAGTTTTTGTTTCTGATATATTAATT
TGCTACACCAGTCATGGTTTCAGAATTCACCTTTTGAACAGCCTGGTTCCAGAGTCAGTA
AAACAAACCGAGGATCTGGGGTATCGAGCCTGTCCCTGGGGTGTGCGGCAGGAAGGACGC
GTCCATAAAGCACGGCTCTCACCTTGGTTGTGCAGCTGCATCATTCATTTCACGGTCTTA
GCGTAGCGACTTGCTGTAGGACTGTCCCTGTCCCTTTGCAGTGGGGGAAGGGACAAGGGG
CCTCCATGGTAGAAGCCTGAGGGGGGTAAAAAATCAGAATGAAGGAACATTGGCTTTAGT
GTCGTTTTTAATTTTAAATAATTTTCAGAAAATAGGACTTTAATAGGAAGAAAGGGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGAGCCACCTGCCTTCTGCAGGGGCCCTTCCTTTTCGGGGGGGGGGGGGCGGTGACG
TTAGCACCTCGGCGGTTGTGTGTCACGTTGTGTTTTTAGCAGAGATTGGGAACACTGGAG
AACTCTTAATTCCTCAGCTCTCAGGGCCTCTGTGCTCTCAGTGTTCCCAGAAACTCCATA
ATGAATGGAATTCACTTCCACACATGGTTTGTTCAAGCACACTTAATAAGTAGCCTGTTT
TTTTAAATGTTTTTAAAATGTAAATATTTGGATGAAGTTTTTGTTTCTGATATATTAATT
TGCTACACCAGTCATGGTTTCAGAATTCACCTTTTGAACAGCCTGGTTCCAGAGTCAGTA
AAACAAACCGAGGATCTGGGGTATCGAGCCTGTCCCTGGGGTGTGCGGCAGGAAGGACGC
GTCCATAAAGCACGGCTCTCACCTTGGTTGTGCAGCTGCATCATTCATTTCACGGTCTTA
GCGTAGCGACTTGCTGTAGGACTGTCCCTGTCCCTTTGCAGTGGGGGAAGGGACAAGGGG
CCTCCATGGTAGAAGCCTGAGGGGGGTAAAAAATCAGAATGAAGGAACATTGGCTTTAGT
GTCGTTTTTAATTTTAAATAATTTTCAGAAAATAGGACTTTAATAGGAAGAAAGGGCAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               81-491, gnl|bosTau2|chr23 (34921037-34921457)
               

               
               81-491, gnl|Hg17|chr6 (7233174-7232741)
               

               
               81-491, gnl|Mm7|chr13 (37396836-37396427)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-491, gnl|bosTau2|chr23 (34921037-34921457)
               

               
               81-491, gnl|Hg17|chr6 (7233174-7232741)
               

               
               81-491, gnl|Mm7|chr13 (37396836-37396427)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               csk (0.422238)
               

               
               cst (0.280073)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               thg (0.126791)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.422238)
               

               
               cst (0.280073)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               thg (0.126791)

	81-491, gnl\|bosTau2\|chr23 (34921037-34921457)
	81-491, gnl\|Hg17\|chr6 (7233174-7232741)
	81-491, gnl\|Mm7\|chr13 (37396836-37396427)

	csk (0.422238)
	cst (0.280073)
	pgl (0.236967)
	pan (0.23596)
	mgp (0.230681)
	rec (0.17307)
	cki (0.165235)
	eli (0.151814)
	che (0.136314)
	thg (0.126791)