Non-Coding RNA Search

Ss1.1-Pig4-TMW8058D17.3

Sequence:


               
               AGTGAGGGTGATGAAGAGGAGACCACACAAGATGAAGTTTCTTCCCACACATCAGAGGAA
GATGGAGGGGTGGTCAAAGTGGAAAAAGAGTTAGAAAATGCAGAACAGCCTGTTGGTGGG
AACAAAGTGGTAGAGCATGAGGTCACAGAGAATTTGAATTCTGACCCCTTACTTGGGCTC
TGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCGCACGTA
TACCAGCACACTGCAGCAGTGGTCAGCGCCAAGAGCTATATGTGTCCTGTCTGTGGCCGG
GCCCTTAGCTCCCCAGGGTCATTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGG
TCTAACTGTGCTGTGTGTGGAGCCCGCTTCACCAGCCATGCCACATTTAACAGCGAGAAG
CTTCCCGAAGTCCTTAATATGGAATCCCTGCCCCCAGCCCACAGTGAGGGCCCCTCCAGT
GCCGAGGGGAAGGACATTGCCTTTAGTCCTCCAGTGTACCCTGCTGGAATTCTGCTTGTG
TGCAACAACTGTGCTGCCTACCGGAAGCTGCTAGAAGCGCAGACCCCCAGTGTACGCAAG
TGGGCCCTGCGTCGACAGAACGAGCCTTTGGAAGTCCGGCTGCAGCGGCTGGAACGAGAG
CGCACAGCGAAGAAGAGCCGGCGGGACAATGAGACCCCCGAGGAGCGGGAGGTAAGGCGC
ATGAGGGACCGGGAAGCCAAGCGCCTACAGCGCATGCAGGAGACGGATGAGCAGCGGGCA
CGCCGGCTGCAGCGAGATCGGGAGGCCATGAGACTGAAGCGCGCCAATGAAACCCCGGAG
AAGCGGCAGGCCCGGCTCATCCGGGAGCGGGAGGCCAAGCGGCTCAAGAGGAGGCTGGAG
AAAATGGACATGATGTTGCGAGCTCAGTTTGGCCAGGACCCTTCTGCCATGGCAGCCTTA
GCAGCTGAGATGAACTTTTTCCAGCTACCTGTGAGTGGGGTGGAGTTGGACAGCCAGCTT
CTGGGAAAGATGGCCTTTGAAGAGCAAAACAACAGCTCTCTGCACTGAACCGTACCCTCC
TGCCTGCCTCCCCAGCCACCCCAGCCCACAGGGATTCATGCTCCAGCCTCCCACAGGGCT
CCGTCCTTGCTGCCGGAGGCAGGCTTGAGTGTGTTGCAGGTGGACCTGTGTACCCCTTGC
ATGTGGGAGCAGGATGATGGGGTCAGGAGGGACCTGGCTCAAGGCAGCTATGGGCGAGGG
AGCAGGCACTCCAGAGAGCCGGACTCCCCGCCCTCTGCTGCAGGGCATGCACGTAGGACT
GGAGCCCCCTGCGCAGCCTCCCAGTCGAGGGCAAATAAATTAATTTTATCTTTTCTGGCC
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAGGGTGATGAAGAGGAGACCACACAAGATGAAGTTTCTTCCCACACATCAGAGGAA
GATGGAGGGGTGGTCAAAGTGGAAAAAGAGTTAGAAAATGCAGAACAGCCTGTTGGTGGG
AACAAAGTGGTAGAGCATGAGGTCACAGAGAATTTGAATTCTGACCCCTTACTTGGGCTC
TGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCGCACGTA
TACCAGCACACTGCAGCAGTGGTCAGCGCCAAGAGCTATATGTGTCCTGTCTGTGGCCGG
GCCCTTAGCTCCCCAGGGTCATTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGG
TCTAACTGTGCTGTGTGTGGAGCCCGCTTCACCAGCCATGCCACATTTAACAGCGAGAAG
CTTCCCGAAGTCCTTAATATGGAATCCCTGCCCCCAGCCCACAGTGAGGGCCCCTCCAGT
GCCGAGGGGAAGGACATTGCCTTTAGTCCTCCAGTGTACCCTGCTGGAATTCTGCTTGTG
TGCAACAACTGTGCTGCCTACCGGAAGCTGCTAGAAGCGCAGACCCCCAGTGTACGCAAG
TGGGCCCTGCGTCGACAGAACGAGCCTTTGGAAGTCCGGCTGCAGCGGCTGGAACGAGAG
CGCACAGCGAAGAAGAGCCGGCGGGACAATGAGACCCCCGAGGAGCGGGAGGTAAGGCGC
ATGAGGGACCGGGAAGCCAAGCGCCTACAGCGCATGCAGGAGACGGATGAGCAGCGGGCA
CGCCGGCTGCAGCGAGATCGGGAGGCCATGAGACTGAAGCGCGCCAATGAAACCCCGGAG
AAGCGGCAGGCCCGGCTCATCCGGGAGCGGGAGGCCAAGCGGCTCAAGAGGAGGCTGGAG
AAAATGGACATGATGTTGCGAGCTCAGTTTGGCCAGGACCCTTCTGCCATGGCAGCCTTA
GCAGCTGAGATGAACTTTTTCCAGCTACCTGTGAGTGGGGTGGAGTTGGACAGCCAGCTT
CTGGGAAAGATGGCCTTTGAAGAGCAAAACAACAGCTCTCTGCACTGAACCGTACCCTCC
TGCCTGCCTCCCCAGCCACCCCAGCCCACAGGGATTCATGCTCCAGCCTCCCACAGGGCT
CCGTCCTTGCTGCCGGAGGCAGGCTTGAGTGTGTTGCAGGTGGACCTGTGTACCCCTTGC
ATGTGGGAGCAGGATGATGGGGTCAGGAGGGACCTGGCTCAAGGCAGCTATGGGCGAGGG
AGCAGGCACTCCAGAGAGCCGGACTCCCCGCCCTCTGCTGCAGGGCATGCACGTAGGACT
GGAGCCCCCTGCGCAGCCTCCCAGTCGAGGGCAAATAAATTAATTTTATCTTTTCTGGCC
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O75541_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O75541_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-116, + strand, RNAz p=0.815089
               

               
               930-1049, - strand, RNAz p=0.825573
               

               
               1146-1264, - strand, RNAz p=0.773389

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, + strand, RNAz p=0.815089
               

               
               930-1049, - strand, RNAz p=0.825573
               

               
               1146-1264, - strand, RNAz p=0.773389

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-142, gnl|bosTau2|chr18 (32339766-32339907)
               

               
               1-142, gnl|Hg17|chr16 (70456447-70456306)
               

               
               1-142, gnl|Mm7|chr8 (108321332-108321476)
               


               
               411-1380, gnl|bosTau2|chr18 (32342547-32343527)
               

               
               411-1380, gnl|Hg17|chr16 (70452079-70451082)
               

               
               411-1380, gnl|Mm7|chr8 (108324093-108325065)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-142, gnl|bosTau2|chr18 (32339766-32339907)
               

               
               1-142, gnl|Hg17|chr16 (70456447-70456306)
               

               
               1-142, gnl|Mm7|chr8 (108321332-108321476)
               


               
               411-1380, gnl|bosTau2|chr18 (32342547-32343527)
               

               
               411-1380, gnl|Hg17|chr16 (70452079-70451082)
               

               
               411-1380, gnl|Mm7|chr8 (108324093-108325065)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-116, + strand, RNAz p=0.815089
	930-1049, - strand, RNAz p=0.825573
	1146-1264, - strand, RNAz p=0.773389

	1-142, gnl\|bosTau2\|chr18 (32339766-32339907)
	1-142, gnl\|Hg17\|chr16 (70456447-70456306)
	1-142, gnl\|Mm7\|chr8 (108321332-108321476)

	411-1380, gnl\|bosTau2\|chr18 (32342547-32343527)
	411-1380, gnl\|Hg17\|chr16 (70452079-70451082)
	411-1380, gnl\|Mm7\|chr8 (108324093-108325065)