Ss1.1-Pig4-TMW8058D20.5
|
ACTAGAACGAACCATTCCAATATGAAGGGGTGGGCAAAGAACTCTTGTTAGAAAATTAGG
AAAAGGAGGAGTGCTTCCCAGTTGGCTCTTGCAACGATAGTTACTATAGAGCATTTAAAT
GAGAATAGAAATCTTTAATATTCCTCAAGAGGAGAGGTCAGGTAACTTTTCCTCTGCACC
TTCCCCCACAAGCGTCCGTGGTGCTGCCGCCGCTCCGGCGCCACCGTGGTGCTGGTCGCC
GTGGACGGAAGCTGACGGGGATCAACTCAAGTCATGCAGGTTGTAAGAAACGCGGGTTCT
CGGCTCTTGCAGTCATGGGCATGGCCACCGAAGACCAGGATCGTGGCTGGACTGCCGGCC
TCCACCATCCACAGGAGCGCCCCTCATTTGCAAGACGCGGCGGCCAAGCTGGACATTGAG
GACAAGGAGGAGGCTCGGACTCCGAGCCACAGCAGCTTCAGCATTTACCCTCCAATTCCA
GGACAAGAGAACTCTCTGAGGTGGGCAGGAAAGAAATTTGAGGAGATCCCCATCGCACAC
ATTAAAGCATCCTACAACAACACACAGATCCAGGTGGTCTCTGCTGCTCACCAGCCCCTT
GCGCACGCTTCCTGTGGCACAGAGGGCTTTCGGAATGCCAAGAAGGGCACGGGCATTGCA
GCACAAACGGCTGGCATAGCTGCTGCAGCGAAAGCTACAGGGAAAGGTGTGACCCACGTC
CGAGTTGTGGTGAAAGGCCTGGGGCCAGGGCGCTTGTCTGCCATCAAGGGCCTGACCATG
GGGGGCCTGGAAGTGATCTCAATCACAGACAACACCCCCATCCCACACAACGGATGCCGC
CCCAGGAAGGCTCGGAGGCTATGATTCAGGAAGCCTGCACTGAACCTGACCTCCAGTCCC
CCTCCAGCTGGACTTCGTAGAAAGCATGCTGTCAGAGCTCTCCAGGGAGGGCTTGTCAGA
GACCCTTCAGGCAGTAGGGGGAGCTCTACCTCCTTCCAGGTGGCCTTTGCTTGCTCCTTC
CACTGGAGAGCCACGTGCCCAGAAGTGAGGCCACACCCTTCTTGGACATGAAGGGGCTGC
AAGGGCCATAACTGCTCCCTCTGCTTAGAGAAAATAAAAATCTCTACCGTCTGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACTAGAACGAACCATTCCAATATGAAGGGGTGGGCAAAGAACTCTTGTTAGAAAATTAGG
AAAAGGAGGAGTGCTTCCCAGTTGGCTCTTGCAACGATAGTTACTATAGAGCATTTAAAT
GAGAATAGAAATCTTTAATATTCCTCAAGAGGAGAGGTCAGGTAACTTTTCCTCTGCACC
TTCCCCCACAAGCGTCCGTGGTGCTGCCGCCGCTCCGGCGCCACCGTGGTGCTGGTCGCC
GTGGACGGAAGCTGACGGGGATCAACTCAAGTCATGCAGGTTGTAAGAAACGCGGGTTCT
CGGCTCTTGCAGTCATGGGCATGGCCACCGAAGACCAGGATCGTGGCTGGACTGCCGGCC
TCCACCATCCACAGGAGCGCCCCTCATTTGCAAGACGCGGCGGCCAAGCTGGACATTGAG
GACAAGGAGGAGGCTCGGACTCCGAGCCACAGCAGCTTCAGCATTTACCCTCCAATTCCA
GGACAAGAGAACTCTCTGAGGTGGGCAGGAAAGAAATTTGAGGAGATCCCCATCGCACAC
ATTAAAGCATCCTACAACAACACACAGATCCAGGTGGTCTCTGCTGCTCACCAGCCCCTT
GCGCACGCTTCCTGTGGCACAGAGGGCTTTCGGAATGCCAAGAAGGGCACGGGCATTGCA
GCACAAACGGCTGGCATAGCTGCTGCAGCGAAAGCTACAGGGAAAGGTGTGACCCACGTC
CGAGTTGTGGTGAAAGGCCTGGGGCCAGGGCGCTTGTCTGCCATCAAGGGCCTGACCATG
GGGGGCCTGGAAGTGATCTCAATCACAGACAACACCCCCATCCCACACAACGGATGCCGC
CCCAGGAAGGCTCGGAGGCTATGATTCAGGAAGCCTGCACTGAACCTGACCTCCAGTCCC
CCTCCAGCTGGACTTCGTAGAAAGCATGCTGTCAGAGCTCTCCAGGGAGGGCTTGTCAGA
GACCCTTCAGGCAGTAGGGGGAGCTCTACCTCCTTCCAGGTGGCCTTTGCTTGCTCCTTC
CACTGGAGAGCCACGTGCCCAGAAGTGAGGCCACACCCTTCTTGGACATGAAGGGGCTGC
AAGGGCCATAACTGCTCCCTCTGCTTAGAGAAAATAAAAATCTCTACCGTCTGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
336-461, gnl|bosTau2|chr21 (14564220-14564348) |
|
336-461, gnl|canFam2|chr3 (54567409-54567763) |
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336-461, gnl|echTel1|scaffold_288853 (40829-40505) |
|
336-461, gnl|hg17|chr15 (86811912-86812265) |
|
336-461, gnl|Hg17|chr15 (86812143-86812259) |
|
336-461, gnl|loxAfr1|scaffold_196675 (980-627) |
|
336-461, gnl|mm7|chr7 (74646532-74646883) |
|
336-461, gnl|Mm7|chr7 (74646767-74646877) |
|
336-461, gnl|monDom2|scaffold_45 (12089440-12089031) |
|
336-461, gnl|oryCun1|scaffold_82147 (6433-6720) |
|
336-461, gnl|panTro1|chr16 (87662222-87662575) |
|
336-461, gnl|rheMac2|chr7 (68083517-68083873) |
|
336-461, gnl|rn3|chr1 (134586223-134586556) |
| |
|
558-690, gnl|bosTau2|chr21 (14572138-14572270) |
|
558-690, gnl|Hg17|chr15 (86819342-86819474) |
|
558-690, gnl|Mm7|chr7 (74653831-74653963) |
| |
|
756-1076, gnl|bosTau2|chr21 (14574496-14574810) |
|
756-1076, gnl|Hg17|chr15 (86822106-86822429) |
|
756-1076, gnl|Mm7|chr7 (74655838-74656118) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
336-461, gnl|bosTau2|chr21 (14564220-14564348) |
|
336-461, gnl|canFam2|chr3 (54567409-54567763) |
|
336-461, gnl|echTel1|scaffold_288853 (40829-40505) |
|
336-461, gnl|hg17|chr15 (86811912-86812265) |
|
336-461, gnl|Hg17|chr15 (86812143-86812259) |
|
336-461, gnl|loxAfr1|scaffold_196675 (980-627) |
|
336-461, gnl|mm7|chr7 (74646532-74646883) |
|
336-461, gnl|Mm7|chr7 (74646767-74646877) |
|
336-461, gnl|monDom2|scaffold_45 (12089440-12089031) |
|
336-461, gnl|oryCun1|scaffold_82147 (6433-6720) |
|
336-461, gnl|panTro1|chr16 (87662222-87662575) |
|
336-461, gnl|rheMac2|chr7 (68083517-68083873) |
|
336-461, gnl|rn3|chr1 (134586223-134586556) |
| |
|
558-690, gnl|bosTau2|chr21 (14572138-14572270) |
|
558-690, gnl|Hg17|chr15 (86819342-86819474) |
|
558-690, gnl|Mm7|chr7 (74653831-74653963) |
| |
|
756-1076, gnl|bosTau2|chr21 (14574496-14574810) |
|
756-1076, gnl|Hg17|chr15 (86822106-86822429) |
|
756-1076, gnl|Mm7|chr7 (74655838-74656118) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
nca (0.273748) |
|
pla (0.267344) |
|
ebs (0.236602) |
|
fli (0.202881) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
cli (0.152812) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
nca (0.273748) |
|
pla (0.267344) |
|
ebs (0.236602) |
|
fli (0.202881) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
cli (0.152812) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
