Non-Coding RNA Search

Ss1.1-Pig4-TMW8058E02.3

Sequence:


               
               GGAAGGAGGGAGAGTGGGAATAAAAGGAAGGAAGAGATATTATTTTTGATGAGCAACCAG
TGTTTTTCAGGATGATACAGAGAAAAATATAGAATAGAAATTTAAGTGCAGGCTTAGGAT
GAGCTACAAATTCTAAAGACGGTGTATGTCTGTGTGCGCGTCTGTGTATTTGTGAGTATA
CACATGCCTATGTGGGTTTGCATAAAGCATGTGTGTGCTCACAAGTAAGGATGTATGTGT
GTGTGTGAGAGAGAGAGAGAGAGAGAGGATTAAAATTCCAGAATGATCATGGGACAAGGA
TGTTCACTTATTTCCTCTGAAGCTCTTTGCCAGCATCAGGAATGAGTGAGAATTTCTTTT
TTATGAAAAGGCTATAGAGGTTTCAAGCAGATGCAGTATTTGTAATATTAAGTTGACTTA
ACTCATGTGAACTCGCATGAGTCACAATGGCAAAGTTTTGGGCAGTTTTGTAGTTTGGCA
TTTAGAAAAGTACCATATTTATTCTCATGCTTCGTATTCCTGCTTAGTATACGCTAGAAG
ATGCCAGTTTTACTCTTTCTGTCATTTAAAGCAATATGATAAGGGTATTCAATCCTTGCA
TACCCTCAATTTCTGGATGAGAAAATTTTCAGTTCTGGAGAAGAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAGGGAGAGTGGGAATAAAAGGAAGGAAGAGATATTATTTTTGATGAGCAACCAG
TGTTTTTCAGGATGATACAGAGAAAAATATAGAATAGAAATTTAAGTGCAGGCTTAGGAT
GAGCTACAAATTCTAAAGACGGTGTATGTCTGTGTGCGCGTCTGTGTATTTGTGAGTATA
CACATGCCTATGTGGGTTTGCATAAAGCATGTGTGTGCTCACAAGTAAGGATGTATGTGT
GTGTGTGAGAGAGAGAGAGAGAGAGAGGATTAAAATTCCAGAATGATCATGGGACAAGGA
TGTTCACTTATTTCCTCTGAAGCTCTTTGCCAGCATCAGGAATGAGTGAGAATTTCTTTT
TTATGAAAAGGCTATAGAGGTTTCAAGCAGATGCAGTATTTGTAATATTAAGTTGACTTA
ACTCATGTGAACTCGCATGAGTCACAATGGCAAAGTTTTGGGCAGTTTTGTAGTTTGGCA
TTTAGAAAAGTACCATATTTATTCTCATGCTTCGTATTCCTGCTTAGTATACGCTAGAAG
ATGCCAGTTTTACTCTTTCTGTCATTTAAAGCAATATGATAAGGGTATTCAATCCTTGCA
TACCCTCAATTTCTGGATGAGAAAATTTTCAGTTCTGGAGAAGAGGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               112-228, - strand, RNAz p=0.999117
               

               
               500-648, - strand, RNAz p=0.89087

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-228, - strand, RNAz p=0.999117
               

               
               500-648, - strand, RNAz p=0.89087

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               163-255, + strand, RNAmicro p=0.998428

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               163-255, + strand, RNAmicro p=0.998428

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-648, gnl|bosTau2|chr8 (53497948-53497318)
               

               
               1-648, gnl|Hg17|chr9 (110011429-110012049)
               

               
               1-648, gnl|Mm7|chr4 (57935519-57936166)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr8 (53497948-53497318)
               

               
               1-648, gnl|Hg17|chr9 (110011429-110012049)
               

               
               1-648, gnl|Mm7|chr4 (57935519-57936166)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               pla (0.133672)

	112-228, - strand, RNAz p=0.999117
	500-648, - strand, RNAz p=0.89087

	1-648, gnl\|bosTau2\|chr8 (53497948-53497318)
	1-648, gnl\|Hg17\|chr9 (110011429-110012049)
	1-648, gnl\|Mm7\|chr4 (57935519-57936166)