Non-Coding RNA Search

Ss1.1-Pig4-TMW8058E03.5

Sequence:


               
               TGTGGCTTTAACATTTTATGCAACTATTTATGAAGACCTCTGTTGTACCTGTAATAAATA
TATAGAAAAAGCACATACTTCGTACGGTGAGCTTTATGGTTTTGTGCGTGTGTTGGGGGC
GGGGTGGGGGGGGTCGTAGCTCTGTGCCATCAGTTCAAGGACACTGAACTCTTCGTGAAA
TTTGTCAGTTTTGAGGACTGTAAAAAGTGATTTCATACTCTGAATCTAAAACTGGATAAT
AGGGTAATGTTTTAAATTTTATTATGCTATTATTCAGAATGCCAAAGTATTATTTTTTTT
TTCCCAAAATCAGTCTGGACATTTCCTACTTTTTAGACTTTTTTGACATTCAACTTTCTG
TACAAAAAAAAATGGCTGGATTTTGAGCTTTTGGTAAGAAACACAAGCCAATTAAGCACT
CGCTGTCCCGAGACACTGCAGCGTCGGCGTCTGCAGCACTGTGGCAGAAACCACGCTGGT
GTGGGAGGCCTTCAACAAATGACGCTGGGTTTCTGGGCACGCTTGAATTTTTCTTGTCTT
TTTACCTTTGTTGTGTGAAATACACTTAAAAAAAAAAAAAAAAAAAAAAAGCCCGCTTCC
CAAGCCAGCCAGACACCTGGGTCTTCAGCCATAAACTGGCCGTAGTTAAGCTTTGCAGCT
TCCAATATATTTTATTTATTCTTTTGTTGGGTTTTTGTTTGTTTCTTGTAAAATTGTACA
GAAACTTTTTAAGAGAAATTGGATTCAAAACTGGATGTGTATTCGTAACCTCACAACTTT
TATTTGTGTATTGTTTCTTTTATTATTTCAGTTAAATTTTTACATTTTTTTGCATGTATA
TTTCTTTGTACAGAGACGTTACATGTTTACACAGTATGATGTGATGTAAATATTTTATTT
TGCCATCAGTTATTTTAAAAAATTAAACATATTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGCTTTAACATTTTATGCAACTATTTATGAAGACCTCTGTTGTACCTGTAATAAATA
TATAGAAAAAGCACATACTTCGTACGGTGAGCTTTATGGTTTTGTGCGTGTGTTGGGGGC
GGGGTGGGGGGGGTCGTAGCTCTGTGCCATCAGTTCAAGGACACTGAACTCTTCGTGAAA
TTTGTCAGTTTTGAGGACTGTAAAAAGTGATTTCATACTCTGAATCTAAAACTGGATAAT
AGGGTAATGTTTTAAATTTTATTATGCTATTATTCAGAATGCCAAAGTATTATTTTTTTT
TTCCCAAAATCAGTCTGGACATTTCCTACTTTTTAGACTTTTTTGACATTCAACTTTCTG
TACAAAAAAAAATGGCTGGATTTTGAGCTTTTGGTAAGAAACACAAGCCAATTAAGCACT
CGCTGTCCCGAGACACTGCAGCGTCGGCGTCTGCAGCACTGTGGCAGAAACCACGCTGGT
GTGGGAGGCCTTCAACAAATGACGCTGGGTTTCTGGGCACGCTTGAATTTTTCTTGTCTT
TTTACCTTTGTTGTGTGAAATACACTTAAAAAAAAAAAAAAAAAAAAAAAGCCCGCTTCC
CAAGCCAGCCAGACACCTGGGTCTTCAGCCATAAACTGGCCGTAGTTAAGCTTTGCAGCT
TCCAATATATTTTATTTATTCTTTTGTTGGGTTTTTGTTTGTTTCTTGTAAAATTGTACA
GAAACTTTTTAAGAGAAATTGGATTCAAAACTGGATGTGTATTCGTAACCTCACAACTTT
TATTTGTGTATTGTTTCTTTTATTATTTCAGTTAAATTTTTACATTTTTTTGCATGTATA
TTTCTTTGTACAGAGACGTTACATGTTTACACAGTATGATGTGATGTAAATATTTTATTT
TGCCATCAGTTATTTTAAAAAATTAAACATATTTGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               193-471, - strand, RNAz p=0.945739
               

               
               586-702, - strand, RNAz p=0.708549

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-471, - strand, RNAz p=0.945739
               

               
               586-702, - strand, RNAz p=0.708549

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               664-788, + strand, RNAmicro p=0.978463

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               664-788, + strand, RNAmicro p=0.978463

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chr20 (34811266-34812173)
               

               
               1-936, gnl|Hg17|chr5 (14562386-14563309)
               

               
               1-936, gnl|Mm7|chr15 (27834688-27833779)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr20 (34811266-34812173)
               

               
               1-936, gnl|Hg17|chr5 (14562386-14563309)
               

               
               1-936, gnl|Mm7|chr15 (27834688-27833779)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               sto (0.359648)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	193-471, - strand, RNAz p=0.945739
	586-702, - strand, RNAz p=0.708549

	1-936, gnl\|bosTau2\|chr20 (34811266-34812173)
	1-936, gnl\|Hg17\|chr5 (14562386-14563309)
	1-936, gnl\|Mm7\|chr15 (27834688-27833779)

	sto (0.359648)
	rec (0.346141)
	sme (0.305437)
	fli (0.202881)
	cmu (0.186393)
	cut (0.169924)
	cje (0.165235)
	fco (0.157208)
	csk (0.140746)
	nca (0.136874)
	che (0.136314)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	ese (0.126502)
	tra (0.123092)
	spc (0.113366)