Non-Coding RNA Search

Ss1.1-Pig4-TMW8058E16.3

Sequence:


               
               GAGTGTTCTGGGTTTGCTAGGGCTTTTTCTGGGTTCACCATGTCTCATTATAAAGTGTGT
TTTTATAGAGGGCTTTAATGGCTGAAATGCAGCCATGAATGTACCACTCTGCCCCCTGGA
TAATTTCAAGGCCCCTTTTGTGTTCTACAGATAGAGGTACGGGGTGAGGGTCAGTCCTAG
CTTTTTCCCCTTGGCTGTATTAGGGACCTATTTATGTGCAATGATATTTATATAAGAAAC
CTGAAGATTTTTGCTTTTTCTAAGGCATTCGTTTAATTCTTAACATCATCTTCTCCCCTA
CCTGTCTATTTCAGCCCCTCTAATTAAATGATGAAAAAATACTATATGATTTTTTAAATA
TAGGACATGTTTGAGGCAGTTTGTTGACCAAATATGCTATGGAGACCCCCATGGATTCAC
ACAAACCAACATCTATATGGTCCTCATGACCACGGGACTCATAGGTTTCTCACGGTGGCA
GCACCAGATGTCTTAAAATGGATATAGAAATGTATCAAAAGAAAAACTGGTAACATTCTT
CTTTCCCTGCCAGAGACTGCCCAGGCCCATATCTCTGTCTAAGTGAAAAGAAACTGATCC
TTTAACAAAGGCAAAGGTAAATTTCTCTATCACCTCTACCGCTTCCTGTCCCCAATAAGG
TGGGTGGGGGGAACAGTTTTGGGGGCCATATATATGGAGCCTTAACCAGAAAAATAAGTA
TGGGGGAGGGGTAATTTCTCAGTAGGCATATGCCCATATACACAGATTTTTTTGTATAAT
CATATTCATTGCTAATATTTATAGGAAAGCATTTATCCCCAACACACACACACACACACA
CACAAAACCAATCCACCTATATATACTGTCTCCATAGAGAAATGTTTTTCTCTTTCCCTC
TACTGAACTTACATAATACCCCCACCCCTTAGAATGTTCCAAACCTTAGAATGGAGTGCT
CTGGGGGCAGCTGCAAAGCCTGCTCCCTAGGACAGATGGAACCACCCTTCTTCATCTACT
CTGTGGGTGGTTTTAGAGCTGTGAGTCAACAGGGCTGAGGGATGTGCTGGTGATTTGTGT
TTGAGTCTTGCCTGACTGATTCATTGTGTTGAGTTTGTCAACAACAATTATGAGAATTCT
GATACCTAATAAAGATATTTTTTTTTTCTTCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGTTCTGGGTTTGCTAGGGCTTTTTCTGGGTTCACCATGTCTCATTATAAAGTGTGT
TTTTATAGAGGGCTTTAATGGCTGAAATGCAGCCATGAATGTACCACTCTGCCCCCTGGA
TAATTTCAAGGCCCCTTTTGTGTTCTACAGATAGAGGTACGGGGTGAGGGTCAGTCCTAG
CTTTTTCCCCTTGGCTGTATTAGGGACCTATTTATGTGCAATGATATTTATATAAGAAAC
CTGAAGATTTTTGCTTTTTCTAAGGCATTCGTTTAATTCTTAACATCATCTTCTCCCCTA
CCTGTCTATTTCAGCCCCTCTAATTAAATGATGAAAAAATACTATATGATTTTTTAAATA
TAGGACATGTTTGAGGCAGTTTGTTGACCAAATATGCTATGGAGACCCCCATGGATTCAC
ACAAACCAACATCTATATGGTCCTCATGACCACGGGACTCATAGGTTTCTCACGGTGGCA
GCACCAGATGTCTTAAAATGGATATAGAAATGTATCAAAAGAAAAACTGGTAACATTCTT
CTTTCCCTGCCAGAGACTGCCCAGGCCCATATCTCTGTCTAAGTGAAAAGAAACTGATCC
TTTAACAAAGGCAAAGGTAAATTTCTCTATCACCTCTACCGCTTCCTGTCCCCAATAAGG
TGGGTGGGGGGAACAGTTTTGGGGGCCATATATATGGAGCCTTAACCAGAAAAATAAGTA
TGGGGGAGGGGTAATTTCTCAGTAGGCATATGCCCATATACACAGATTTTTTTGTATAAT
CATATTCATTGCTAATATTTATAGGAAAGCATTTATCCCCAACACACACACACACACACA
CACAAAACCAATCCACCTATATATACTGTCTCCATAGAGAAATGTTTTTCTCTTTCCCTC
TACTGAACTTACATAATACCCCCACCCCTTAGAATGTTCCAAACCTTAGAATGGAGTGCT
CTGGGGGCAGCTGCAAAGCCTGCTCCCTAGGACAGATGGAACCACCCTTCTTCATCTACT
CTGTGGGTGGTTTTAGAGCTGTGAGTCAACAGGGCTGAGGGATGTGCTGGTGATTTGTGT
TTGAGTCTTGCCTGACTGATTCATTGTGTTGAGTTTGTCAACAACAATTATGAGAATTCT
GATACCTAATAAAGATATTTTTTTTTTCTTCCAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               509-626, - strand, RNAz p=0.917548
               

               
               855-1013, - strand, RNAz p=0.998625

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-626, - strand, RNAz p=0.917548
               

               
               855-1013, - strand, RNAz p=0.998625

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               541-672, - strand, RNAmicro p=0.909489

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               541-672, - strand, RNAmicro p=0.909489

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-274, gnl|bosTau2|chr18 (6760081-6759810)
               

               
               1-274, gnl|canFam2|chr25 (31179420-31178923)
               

               
               1-274, gnl|dasNov1|scaffold_164889 (3597-3169)
               

               
               1-274, gnl|echTel1|scaffold_305196 (5870-6366)
               

               
               1-274, gnl|hg17|chr8 (9795818-9796288)
               

               
               1-274, gnl|Hg17|chr8 (9796096-9795817)
               

               
               1-274, gnl|mm7|chr14 (59454527-59454061)
               

               
               1-274, gnl|Mm7|chr14 (59454276-59454528)
               

               
               1-274, gnl|monDom2|scaffold_1 (69682767-69683212)
               

               
               1-274, gnl|oryCun1|scaffold_140962 (1063-612)
               

               
               1-274, gnl|panTro1|chr7 (10421940-10422410)
               

               
               1-274, gnl|rheMac2|chr8 (10820863-10820394)
               

               
               1-274, gnl|rn3|chr15 (43962740-43962284)
               


               
               430-1164, gnl|bosTau2|chr18 (6759485-6758767)
               

               
               430-1164, gnl|Hg17|chr8 (9795654-9794988)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-274, gnl|bosTau2|chr18 (6760081-6759810)
               

               
               1-274, gnl|canFam2|chr25 (31179420-31178923)
               

               
               1-274, gnl|dasNov1|scaffold_164889 (3597-3169)
               

               
               1-274, gnl|echTel1|scaffold_305196 (5870-6366)
               

               
               1-274, gnl|hg17|chr8 (9795818-9796288)
               

               
               1-274, gnl|Hg17|chr8 (9796096-9795817)
               

               
               1-274, gnl|mm7|chr14 (59454527-59454061)
               

               
               1-274, gnl|Mm7|chr14 (59454276-59454528)
               

               
               1-274, gnl|monDom2|scaffold_1 (69682767-69683212)
               

               
               1-274, gnl|oryCun1|scaffold_140962 (1063-612)
               

               
               1-274, gnl|panTro1|chr7 (10421940-10422410)
               

               
               1-274, gnl|rheMac2|chr8 (10820863-10820394)
               

               
               1-274, gnl|rn3|chr15 (43962740-43962284)
               


               
               430-1164, gnl|bosTau2|chr18 (6759485-6758767)
               

               
               430-1164, gnl|Hg17|chr8 (9795654-9794988)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fce (1.08637)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (1.08637)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)

	509-626, - strand, RNAz p=0.917548
	855-1013, - strand, RNAz p=0.998625

	1-274, gnl\|bosTau2\|chr18 (6760081-6759810)
	1-274, gnl\|canFam2\|chr25 (31179420-31178923)
	1-274, gnl\|dasNov1\|scaffold_164889 (3597-3169)
	1-274, gnl\|echTel1\|scaffold_305196 (5870-6366)
	1-274, gnl\|hg17\|chr8 (9795818-9796288)
	1-274, gnl\|Hg17\|chr8 (9796096-9795817)
	1-274, gnl\|mm7\|chr14 (59454527-59454061)
	1-274, gnl\|Mm7\|chr14 (59454276-59454528)
	1-274, gnl\|monDom2\|scaffold_1 (69682767-69683212)
	1-274, gnl\|oryCun1\|scaffold_140962 (1063-612)
	1-274, gnl\|panTro1\|chr7 (10421940-10422410)
	1-274, gnl\|rheMac2\|chr8 (10820863-10820394)
	1-274, gnl\|rn3\|chr15 (43962740-43962284)

	430-1164, gnl\|bosTau2\|chr18 (6759485-6758767)
	430-1164, gnl\|Hg17\|chr8 (9795654-9794988)

	fce (1.08637)
	eye (0.170503)
	fhi (0.169578)
	cbr (0.127975)
	ecc (0.115035)