Non-Coding RNA Search

Ss1.1-Pig4-TMW8058E21.3

Sequence:


               
               GCCTGGGAAGTTTGAAGACTTCTACAAGCTGGTGCTGCACACCCACCACATCTCCAACAC
CGAGGTGACCATCGGCTACGCCGATGTGCACGGCGACCTGCTGCCCATCAACAATGATGA
CAACTTCTGCAAGGCCGTCTCCAGCGCAAACCCCCTGCTTAGGGTCTTCATCCAGAAACG
AGAGGAGGCTGAGCATGGCAGCTTCGGGGCAGGCTCACTATCCAGGCGGCGGCGCGCACT
GGCCCTGCGGGAGGACGGCCCTCGCCGGCGGGCGCACCTGCACATCGGCCTGCCGCACGA
CTTCCGCCCTGTGTCCTCCATCATCGATGTGGACATCCTCCCCGAGACCCACCGCCGTGT
AAGGCTCTACCGGCACGGCTGCCAGAAGCCACTGGGCTTCTACATCCGCGATGGCACGAG
CGTGCGCGTGGCCCCGCAGGGGCTGGAGAAAGTGCCCGGCATTTTCATCTCCCGCATGGT
GCCTGGAGGCCTGGCTGAGAGCACTGGGCTGCTGGCCGTGGACGATGAGGTCCTGGAGGT
AAATGGGATCGAGGTGGCCGGGAAGACGCTGGACCAGGTCACAGACATGATGATCGCCAA
CAGCCACAACCTCATCGTCACAGTCAAGCCAGCCAATCAGAGGAACAACGTGGTACGTGG
CAGCCGCGCATCGGGCAGCTCCAGCCGATCCTCGGACAGCACGGCCAGCCGCCACAGCCT
GCCCACTGCCCACGTCCTGCAGAACTTGCCCCCGGATGACATGGAGAGTGACGAGGAGGC
TGATGTAGTCCTCGAGGTCTCTAGGCCGCCGGCCAGCAGCCTCCCGCGGATCAACGGAGC
CAGCCTGGCATCCAGCCTGCATAGCCCTGGGCGAGAGGGCAGCATGCACAAGCTGCTCAG
CTCCCTCCGGTCAGAAACCCGGCATAGCCTAAACCTGCCCCCAGGAGGGGTGGAGGAGCA
TGGTCCAGCAGTCACGCTGTAGGGCCAGGCAACAGACAGGTCAGTTTCCCAAGGGGAAAT
ACTTTAAAATTTTTTATTCTAATTTTAAAGTAAGAAAAAATCGTATACTTAACTCCTTTT
TGTTGTTTTTATTTATCCCTCCCTTTTTTCCCACAACCCTACTCTTTATTTCAACTATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGGAAGTTTGAAGACTTCTACAAGCTGGTGCTGCACACCCACCACATCTCCAACAC
CGAGGTGACCATCGGCTACGCCGATGTGCACGGCGACCTGCTGCCCATCAACAATGATGA
CAACTTCTGCAAGGCCGTCTCCAGCGCAAACCCCCTGCTTAGGGTCTTCATCCAGAAACG
AGAGGAGGCTGAGCATGGCAGCTTCGGGGCAGGCTCACTATCCAGGCGGCGGCGCGCACT
GGCCCTGCGGGAGGACGGCCCTCGCCGGCGGGCGCACCTGCACATCGGCCTGCCGCACGA
CTTCCGCCCTGTGTCCTCCATCATCGATGTGGACATCCTCCCCGAGACCCACCGCCGTGT
AAGGCTCTACCGGCACGGCTGCCAGAAGCCACTGGGCTTCTACATCCGCGATGGCACGAG
CGTGCGCGTGGCCCCGCAGGGGCTGGAGAAAGTGCCCGGCATTTTCATCTCCCGCATGGT
GCCTGGAGGCCTGGCTGAGAGCACTGGGCTGCTGGCCGTGGACGATGAGGTCCTGGAGGT
AAATGGGATCGAGGTGGCCGGGAAGACGCTGGACCAGGTCACAGACATGATGATCGCCAA
CAGCCACAACCTCATCGTCACAGTCAAGCCAGCCAATCAGAGGAACAACGTGGTACGTGG
CAGCCGCGCATCGGGCAGCTCCAGCCGATCCTCGGACAGCACGGCCAGCCGCCACAGCCT
GCCCACTGCCCACGTCCTGCAGAACTTGCCCCCGGATGACATGGAGAGTGACGAGGAGGC
TGATGTAGTCCTCGAGGTCTCTAGGCCGCCGGCCAGCAGCCTCCCGCGGATCAACGGAGC
CAGCCTGGCATCCAGCCTGCATAGCCCTGGGCGAGAGGGCAGCATGCACAAGCTGCTCAG
CTCCCTCCGGTCAGAAACCCGGCATAGCCTAAACCTGCCCCCAGGAGGGGTGGAGGAGCA
TGGTCCAGCAGTCACGCTGTAGGGCCAGGCAACAGACAGGTCAGTTTCCCAAGGGGAAAT
ACTTTAAAATTTTTTATTCTAATTTTAAAGTAAGAAAAAATCGTATACTTAACTCCTTTT
TGTTGTTTTTATTTATCCCTCCCTTTTTTCCCACAACCCTACTCTTTATTTCAACTATGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31543460|ref|NP_444347.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31543460|ref|NP_444347.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               905-1024, - strand, RNAz p=0.664097

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               905-1024, - strand, RNAz p=0.664097

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               181-1136, gnl|bosTau2|chr24 (1443584-1442606)
               

               
               181-1136, gnl|Hg17|chr18 (76019482-76018516)
               


               
               273-797, gnl|bosTau2|chr13 (59954051-59953536)
               

               
               273-797, gnl|canFam2|chr24 (40101381-40102050)
               

               
               273-797, gnl|danRer3|chr5 (40932054-40932769)
               

               
               273-797, gnl|dasNov1|scaffold_8981 (3986-3320)
               

               
               273-797, gnl|echTel1|scaffold_307690 (7437-6763)
               

               
               273-797, gnl|fr1|chrUn (118505986-118506666)
               

               
               273-797, gnl|galGal2|chr20 (13078185-13077521)
               

               
               273-797, gnl|hg17|chr20 (48799558-48800225)
               

               
               273-797, gnl|Hg17|chr20 (48799699-48800211)
               

               
               273-797, gnl|loxAfr1|scaffold_5899 (36944-36284)
               

               
               273-797, gnl|mm7|chr2 (167890986-167891660)
               

               
               273-797, gnl|Mm7|chr2 (167891134-167891646)
               

               
               273-797, gnl|monDom2|scaffold_1 (162657194-162657882)
               

               
               273-797, gnl|oryCun1|scaffold_87943 (1865-1201)
               

               
               273-797, gnl|panTro1|chr21 (51535972-51536639)
               

               
               273-797, gnl|rheMac2|chr10 (13709581-13708914)
               

               
               273-797, gnl|rn3|chr3 (159154973-159155645)
               

               
               273-797, gnl|tetNig1|chr21 (1589159-1589855)
               

               
               273-797, gnl|xenTro1|scaffold_165 (1303285-1303955)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-1136, gnl|bosTau2|chr24 (1443584-1442606)
               

               
               181-1136, gnl|Hg17|chr18 (76019482-76018516)
               


               
               273-797, gnl|bosTau2|chr13 (59954051-59953536)
               

               
               273-797, gnl|canFam2|chr24 (40101381-40102050)
               

               
               273-797, gnl|danRer3|chr5 (40932054-40932769)
               

               
               273-797, gnl|dasNov1|scaffold_8981 (3986-3320)
               

               
               273-797, gnl|echTel1|scaffold_307690 (7437-6763)
               

               
               273-797, gnl|fr1|chrUn (118505986-118506666)
               

               
               273-797, gnl|galGal2|chr20 (13078185-13077521)
               

               
               273-797, gnl|hg17|chr20 (48799558-48800225)
               

               
               273-797, gnl|Hg17|chr20 (48799699-48800211)
               

               
               273-797, gnl|loxAfr1|scaffold_5899 (36944-36284)
               

               
               273-797, gnl|mm7|chr2 (167890986-167891660)
               

               
               273-797, gnl|Mm7|chr2 (167891134-167891646)
               

               
               273-797, gnl|monDom2|scaffold_1 (162657194-162657882)
               

               
               273-797, gnl|oryCun1|scaffold_87943 (1865-1201)
               

               
               273-797, gnl|panTro1|chr21 (51535972-51536639)
               

               
               273-797, gnl|rheMac2|chr10 (13709581-13708914)
               

               
               273-797, gnl|rn3|chr3 (159154973-159155645)
               

               
               273-797, gnl|tetNig1|chr21 (1589159-1589855)
               

               
               273-797, gnl|xenTro1|scaffold_165 (1303285-1303955)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	181-1136, gnl\|bosTau2\|chr24 (1443584-1442606)
	181-1136, gnl\|Hg17\|chr18 (76019482-76018516)

	273-797, gnl\|bosTau2\|chr13 (59954051-59953536)
	273-797, gnl\|canFam2\|chr24 (40101381-40102050)
	273-797, gnl\|danRer3\|chr5 (40932054-40932769)
	273-797, gnl\|dasNov1\|scaffold_8981 (3986-3320)
	273-797, gnl\|echTel1\|scaffold_307690 (7437-6763)
	273-797, gnl\|fr1\|chrUn (118505986-118506666)
	273-797, gnl\|galGal2\|chr20 (13078185-13077521)
	273-797, gnl\|hg17\|chr20 (48799558-48800225)
	273-797, gnl\|Hg17\|chr20 (48799699-48800211)
	273-797, gnl\|loxAfr1\|scaffold_5899 (36944-36284)
	273-797, gnl\|mm7\|chr2 (167890986-167891660)
	273-797, gnl\|Mm7\|chr2 (167891134-167891646)
	273-797, gnl\|monDom2\|scaffold_1 (162657194-162657882)
	273-797, gnl\|oryCun1\|scaffold_87943 (1865-1201)
	273-797, gnl\|panTro1\|chr21 (51535972-51536639)
	273-797, gnl\|rheMac2\|chr10 (13709581-13708914)
	273-797, gnl\|rn3\|chr3 (159154973-159155645)
	273-797, gnl\|tetNig1\|chr21 (1589159-1589855)
	273-797, gnl\|xenTro1\|scaffold_165 (1303285-1303955)