Ss1.1-Pig4-TMW8058F01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAATCAGACCAAATGCCAAAGTTGTGGTATTCCTTTTCTTAAGGATTTGCAAAGAAA TTGCAGACAAGCTGTAACTTTGAATGAATCGACTGGACCATTATTAAGAACATCAATTCA TCAGAATTCTGGAGGACAGAAGTCACAAAACATAACATTATCAGCCAAGAAGTTTTATGG CAACAGTGTGGGAAAGATTCCAATTGATATTATTGTGAATTGTGATGAAAGTGGACAGAA TTATTTACAGACTAATGGTAAAGTCATTTTATCTAGGGCTAAAGTAGCCAAAATCACAAA CCTGAAAGAAAGGAAAACAAGCCTGTCAGACCTGAATGACCCAATCATTTTGTCCAGTGA TGATGATGATGATGACGACGACAGTGACAGGACTAACCGAAGAGGAAACATATCTCCTCA GCCTGCTGATTCAGCATGTTCCTCCCCAGCACCATCCACAGGAAAAGTAGAAGCAGCTCT AAATGAAAATACCTGTAGAGCAGAGCATGAACTAAGAAGCATTCCAGCAGATTCAGAATT CAGTACAGTTACATTGCCAAGAAAAGCAAGAATGAAAGACCAGTTTGGTAATTCTATTAT CAGTACACCTCAAAAACGTCGCAAAGTGATTTCTCAAGAAACTGTAGTTGATCCTGTATC TTTAAGCTGCCAAAGTTCCTTTGATAGAGTATTTTTAAACTGTCGAAGTATACGAGTAGG AACACTATTCCGACTATTAATAGAACCTGTAATTTTTTGTTTAGATTTTATCAAGATAAA GCTAGAAGAACCAGAAAATGATCCTGTAGGGATTACCTTAAATACCTCTGATCTAACTAA ATGTGAATGGTGTAATGTCCGAAAATTACCAGTAGTGTTTCTTCAGACGACACCAGCAGT GTATCAGAAATTGAGCATGCAACTGCAGATGAACATGAAGGATAATGTGTGGAATGATTG TAAAGGAATAAATAAGTTAACAAATTTGGAAGAACAATACATAATTCTAATTTTTCAAAA TGGCCTTGATCCTCAGGCAAATATGGTATTTGAAAATATCATTACCGAAATTGGTGCAAA GAATAAGGTGTCCAATTTTTTTGCGAAAATTCCCTTTGAAGAAGCCAATAGCAGACTTGT TGCCTGTACAAGAACCTATGAAGAGAGCATCAAAGGAAGTGGTGTGCAAAAAGAAAACAA AATTAAAAATGTGGGCATTGAATCTAAAATACAGTTTAAAAACAAACAAGAATTACAGTT TTTTGATGACGAGGATGAAACTGGAGAGAGCCACACCATCTTCATGGGCCCCGTAGAAAA ATTAATAGTATATCCACCACCTCCAGCTAAGGGAGGTATCTCCGTTACTAATGAGGACCT GCACTGTCTGAGTGAAGGGGAATTTTTAAATGATGTTATTATAGACTTTTATTTGAAGTA TTTGGTGCTTGAAAAATTGAAGAAAGAAGACGCTGACCGAATTCATATATTCAGTTCTTT TTTCTATAAACGCCTTAATCAGAGAGAGAGGAGAAATCTTCATGAAACAACTAATCTGTC AATACAGCAAAAGCGACATGGGAGAGTGAAAACTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAATCAGACCAAATGCCAAAGTTGTGGTATTCCTTTTCTTAAGGATTTGCAAAGAAA TTGCAGACAAGCTGTAACTTTGAATGAATCGACTGGACCATTATTAAGAACATCAATTCA TCAGAATTCTGGAGGACAGAAGTCACAAAACATAACATTATCAGCCAAGAAGTTTTATGG CAACAGTGTGGGAAAGATTCCAATTGATATTATTGTGAATTGTGATGAAAGTGGACAGAA TTATTTACAGACTAATGGTAAAGTCATTTTATCTAGGGCTAAAGTAGCCAAAATCACAAA CCTGAAAGAAAGGAAAACAAGCCTGTCAGACCTGAATGACCCAATCATTTTGTCCAGTGA TGATGATGATGATGACGACGACAGTGACAGGACTAACCGAAGAGGAAACATATCTCCTCA GCCTGCTGATTCAGCATGTTCCTCCCCAGCACCATCCACAGGAAAAGTAGAAGCAGCTCT AAATGAAAATACCTGTAGAGCAGAGCATGAACTAAGAAGCATTCCAGCAGATTCAGAATT CAGTACAGTTACATTGCCAAGAAAAGCAAGAATGAAAGACCAGTTTGGTAATTCTATTAT CAGTACACCTCAAAAACGTCGCAAAGTGATTTCTCAAGAAACTGTAGTTGATCCTGTATC TTTAAGCTGCCAAAGTTCCTTTGATAGAGTATTTTTAAACTGTCGAAGTATACGAGTAGG AACACTATTCCGACTATTAATAGAACCTGTAATTTTTTGTTTAGATTTTATCAAGATAAA GCTAGAAGAACCAGAAAATGATCCTGTAGGGATTACCTTAAATACCTCTGATCTAACTAA ATGTGAATGGTGTAATGTCCGAAAATTACCAGTAGTGTTTCTTCAGACGACACCAGCAGT GTATCAGAAATTGAGCATGCAACTGCAGATGAACATGAAGGATAATGTGTGGAATGATTG TAAAGGAATAAATAAGTTAACAAATTTGGAAGAACAATACATAATTCTAATTTTTCAAAA TGGCCTTGATCCTCAGGCAAATATGGTATTTGAAAATATCATTACCGAAATTGGTGCAAA GAATAAGGTGTCCAATTTTTTTGCGAAAATTCCCTTTGAAGAAGCCAATAGCAGACTTGT TGCCTGTACAAGAACCTATGAAGAGAGCATCAAAGGAAGTGGTGTGCAAAAAGAAAACAA AATTAAAAATGTGGGCATTGAATCTAAAATACAGTTTAAAAACAAACAAGAATTACAGTT TTTTGATGACGAGGATGAAACTGGAGAGAGCCACACCATCTTCATGGGCCCCGTAGAAAA ATTAATAGTATATCCACCACCTCCAGCTAAGGGAGGTATCTCCGTTACTAATGAGGACCT GCACTGTCTGAGTGAAGGGGAATTTTTAAATGATGTTATTATAGACTTTTATTTGAAGTA TTTGGTGCTTGAAAAATTGAAGAAAGAAGACGCTGACCGAATTCATATATTCAGTTCTTT TTTCTATAAACGCCTTAATCAGAGAGAGAGGAGAAATCTTCATGAAACAACTAATCTGTC AATACAGCAAAAGCGACATGGGAGAGTGAAAACTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-119, + strand, RNAz p=0.795614 | |
| 345-463, + strand, RNAz p=0.526505 | |
| 369-458, - strand, RNAz p=0.734319 | |
| 1093-1212, + strand, RNAz p=0.827608 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, + strand, RNAz p=0.795614 | |
| 345-463, + strand, RNAz p=0.526505 | |
| 369-458, - strand, RNAz p=0.734319 | |
| 1093-1212, + strand, RNAz p=0.827608 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 1-181, gnl|bosTau2|chr9 (5848183-5848363) | |
| 1-181, gnl|canFam2|chr12 (40291826-40292010) | |
| 1-181, gnl|dasNov1|scaffold_68984 (3241-3425) | |
| 1-181, gnl|echTel1|scaffold_86473 (2399-2583) | |
| 1-181, gnl|galGal2|chr3 (78912992-78912811) | |
| 1-181, gnl|hg17|chr6 (76429571-76429752) | |
| 1-181, gnl|loxAfr1|scaffold_46914 (9191-9375) | |
| 1-181, gnl|mm7|chr9 (80190175-80190359) | |
| 1-181, gnl|monDom2|scaffold_0 (157525684-157525506) | |
| 1-181, gnl|oryCun1|scaffold_148776 (4395-4211) | |
| 1-181, gnl|panTro1|chr5 (77787382-77787560) | |
| 1-181, gnl|rheMac2|chr4 (71812100-71812284) | |
| 1-181, gnl|rn3|chr8 (85168632-85168816) | |
| 1-181, gnl|xenTro1|scaffold_166 (511059-511215) | |
| 345-583, gnl|bosTau2|chr9 (5853570-5853808) | |
| 345-583, gnl|canFam2|chr12 (40297409-40297660) | |
| 345-583, gnl|danRer3|chr20 (126591-126326) | |
| 345-583, gnl|dasNov1|scaffold_36031 (14361-14113) | |
| 345-583, gnl|echTel1|scaffold_86473 (2780-3005) | |
| 345-583, gnl|fr1|chrUn (67112980-67113239) | |
| 345-583, gnl|galGal2|chr3 (78911757-78911510) | |
| 345-583, gnl|hg17|chr6 (76433142-76433391) | |
| 345-583, gnl|Hg17|chr6 (76433148-76433377) | |
| 345-583, gnl|loxAfr1|scaffold_16852 (21474-21253) | |
| 345-583, gnl|mm7|chr9 (80192973-80193217) | |
| 345-583, gnl|Mm7|chr9 (80192979-80193211) | |
| 345-583, gnl|monDom2|scaffold_0 (157518349-157518098) | |
| 345-583, gnl|oryCun1|scaffold_177042 (43532-43780) | |
| 345-583, gnl|panTro1|chr5 (77790819-77791068) | |
| 345-583, gnl|rheMac2|chr4 (71815129-71815378) | |
| 345-583, gnl|rn3|chr8 (85171195-85171436) | |
| 345-583, gnl|tetNig1|chr14 (9382709-9382458) | |
| 345-583, gnl|xenTro1|scaffold_166 (515984-516219) | |
| 981-1212, gnl|bosTau2|chr9 (5859375-5859606) | |
| 981-1212, gnl|canFam2|chr12 (28107050-28107179) | |
| 981-1212, gnl|danRer3|chr20 (119474-119594) | |
| 981-1212, gnl|dasNov1|scaffold_3752 (13775-13646) | |
| 981-1212, gnl|echTel1|scaffold_285140 (4116-4230) | |
| 981-1212, gnl|hg17|chr6 (57902118-57902243) | |
| 981-1212, gnl|Hg17|chr6 (76443463-76443694) | |
| 981-1212, gnl|loxAfr1|scaffold_16852 (20656-20794) | |
| 981-1212, gnl|mm7|chr1 (33359093-33358984) | |
| 981-1212, gnl|Mm7|chr9 (80200164-80200395) | |
| 981-1212, gnl|oryCun1|scaffold_120798 (9254-9379) | |
| 981-1212, gnl|panTro1|chr5_random (33587320-33587439) | |
| 981-1212, gnl|rheMac2|chr4 (57538268-57538387) | |
| 981-1212, gnl|rn3|chr8 (85182080-85181940) | |
| 1438-1560, gnl|bosTau2|chr9 (5868375-5868497) | |
| 1438-1560, gnl|canFam2|chr12 (40320556-40320717) | |
| 1438-1560, gnl|danRer3|chr20 (118969-118797) | |
| 1438-1560, gnl|dasNov1|scaffold_6886 (85749-85586) | |
| 1438-1560, gnl|echTel1|scaffold_322497 (7179-7339) | |
| 1438-1560, gnl|fr1|chrUn (67114930-67115045) | |
| 1438-1560, gnl|galGal2|chr3 (78901924-78901791) | |
| 1438-1560, gnl|hg17|chr6 (76462237-76462395) | |
| 1438-1560, gnl|Hg17|chr6 (76462240-76462359) | |
| 1438-1560, gnl|loxAfr1|scaffold_19582 (39417-39254) | |
| 1438-1560, gnl|mm7|chr9 (80207183-80207325) | |
| 1438-1560, gnl|Mm7|chr9 (80207186-80207305) | |
| 1438-1560, gnl|monDom2|scaffold_0 (157504524-157504372) | |
| 1438-1560, gnl|oryCun1|scaffold_212350 (35440-35289) | |
| 1438-1560, gnl|panTro1|chr5 (77820037-77820195) | |
| 1438-1560, gnl|rheMac2|chr4 (71841601-71841759) | |
| 1438-1560, gnl|rn3|chr8 (85188309-85188449) | |
| 1438-1560, gnl|tetNig1|chr14 (9380698-9380565) | |
| 1438-1560, gnl|xenTro1|scaffold_166 (530254-530414) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-181, gnl|bosTau2|chr9 (5848183-5848363) | |
| 1-181, gnl|canFam2|chr12 (40291826-40292010) | |
| 1-181, gnl|dasNov1|scaffold_68984 (3241-3425) | |
| 1-181, gnl|echTel1|scaffold_86473 (2399-2583) | |
| 1-181, gnl|galGal2|chr3 (78912992-78912811) | |
| 1-181, gnl|hg17|chr6 (76429571-76429752) | |
| 1-181, gnl|loxAfr1|scaffold_46914 (9191-9375) | |
| 1-181, gnl|mm7|chr9 (80190175-80190359) | |
| 1-181, gnl|monDom2|scaffold_0 (157525684-157525506) | |
| 1-181, gnl|oryCun1|scaffold_148776 (4395-4211) | |
| 1-181, gnl|panTro1|chr5 (77787382-77787560) | |
| 1-181, gnl|rheMac2|chr4 (71812100-71812284) | |
| 1-181, gnl|rn3|chr8 (85168632-85168816) | |
| 1-181, gnl|xenTro1|scaffold_166 (511059-511215) | |
| 345-583, gnl|bosTau2|chr9 (5853570-5853808) | |
| 345-583, gnl|canFam2|chr12 (40297409-40297660) | |
| 345-583, gnl|danRer3|chr20 (126591-126326) | |
| 345-583, gnl|dasNov1|scaffold_36031 (14361-14113) | |
| 345-583, gnl|echTel1|scaffold_86473 (2780-3005) | |
| 345-583, gnl|fr1|chrUn (67112980-67113239) | |
| 345-583, gnl|galGal2|chr3 (78911757-78911510) | |
| 345-583, gnl|hg17|chr6 (76433142-76433391) | |
| 345-583, gnl|Hg17|chr6 (76433148-76433377) | |
| 345-583, gnl|loxAfr1|scaffold_16852 (21474-21253) | |
| 345-583, gnl|mm7|chr9 (80192973-80193217) | |
| 345-583, gnl|Mm7|chr9 (80192979-80193211) | |
| 345-583, gnl|monDom2|scaffold_0 (157518349-157518098) | |
| 345-583, gnl|oryCun1|scaffold_177042 (43532-43780) | |
| 345-583, gnl|panTro1|chr5 (77790819-77791068) | |
| 345-583, gnl|rheMac2|chr4 (71815129-71815378) | |
| 345-583, gnl|rn3|chr8 (85171195-85171436) | |
| 345-583, gnl|tetNig1|chr14 (9382709-9382458) | |
| 345-583, gnl|xenTro1|scaffold_166 (515984-516219) | |
| 981-1212, gnl|bosTau2|chr9 (5859375-5859606) | |
| 981-1212, gnl|canFam2|chr12 (28107050-28107179) | |
| 981-1212, gnl|danRer3|chr20 (119474-119594) | |
| 981-1212, gnl|dasNov1|scaffold_3752 (13775-13646) | |
| 981-1212, gnl|echTel1|scaffold_285140 (4116-4230) | |
| 981-1212, gnl|hg17|chr6 (57902118-57902243) | |
| 981-1212, gnl|Hg17|chr6 (76443463-76443694) | |
| 981-1212, gnl|loxAfr1|scaffold_16852 (20656-20794) | |
| 981-1212, gnl|mm7|chr1 (33359093-33358984) | |
| 981-1212, gnl|Mm7|chr9 (80200164-80200395) | |
| 981-1212, gnl|oryCun1|scaffold_120798 (9254-9379) | |
| 981-1212, gnl|panTro1|chr5_random (33587320-33587439) | |
| 981-1212, gnl|rheMac2|chr4 (57538268-57538387) | |
| 981-1212, gnl|rn3|chr8 (85182080-85181940) | |
| 1438-1560, gnl|bosTau2|chr9 (5868375-5868497) | |
| 1438-1560, gnl|canFam2|chr12 (40320556-40320717) | |
| 1438-1560, gnl|danRer3|chr20 (118969-118797) | |
| 1438-1560, gnl|dasNov1|scaffold_6886 (85749-85586) | |
| 1438-1560, gnl|echTel1|scaffold_322497 (7179-7339) | |
| 1438-1560, gnl|fr1|chrUn (67114930-67115045) | |
| 1438-1560, gnl|galGal2|chr3 (78901924-78901791) | |
| 1438-1560, gnl|hg17|chr6 (76462237-76462395) | |
| 1438-1560, gnl|Hg17|chr6 (76462240-76462359) | |
| 1438-1560, gnl|loxAfr1|scaffold_19582 (39417-39254) | |
| 1438-1560, gnl|mm7|chr9 (80207183-80207325) | |
| 1438-1560, gnl|Mm7|chr9 (80207186-80207305) | |
| 1438-1560, gnl|monDom2|scaffold_0 (157504524-157504372) | |
| 1438-1560, gnl|oryCun1|scaffold_212350 (35440-35289) | |
| 1438-1560, gnl|panTro1|chr5 (77820037-77820195) | |
| 1438-1560, gnl|rheMac2|chr4 (71841601-71841759) | |
| 1438-1560, gnl|rn3|chr8 (85188309-85188449) | |
| 1438-1560, gnl|tetNig1|chr14 (9380698-9380565) | |
| 1438-1560, gnl|xenTro1|scaffold_166 (530254-530414) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| kid (0.259471) | |
| tbr (0.154178) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.259471) | |
| tbr (0.154178) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| eje (0.0988338) |