Non-Coding RNA Search

Ss1.1-Pig4-TMW8058F05.3.5

Sequence:


               
               ATATATCTTGTATATGAAACTTGGTAATGTCAGATAGGACCCTGAGCAGTATCATAGCCT
TATTGCCATTTTGTGTGTGTGTGTACATTGAATGGCTCATGAGATTTTAAGAGATTTTTT
AATGTATTTCTACTAAATGCATTTATCCTTCTACATGTTTATATATTTTGGTAAAATGGT
TTATTAGATATTTGGTATTTTAGTAAGATGAAATTTCCTCACATGTTTGGTTAATGCTTT
GATGTCAAGATTGCACATTGCTGAGTTGAAGCTCAGAAGTGTATGCAGCTTTGGGCATTT
TCAACTGCAGACTGCAGTTTCCTTGGCTGAAAATTGCATTGTGTGTTCTGGTGCATTTGC
TCATGCTCTAAAATGACATTTGGTCGCTGTGATGCTTAAGTCACTAATTACTGGGTCTCT
GATGGCAGTGTTGCTATCACATGACCATGTATTTACTTCTTTTGCAAAGTGATGACATGG
CTAGGTCATCACCAAATATAACACAAGAGGATATGAGCGTGAGTATGTTGTTGGAAGGTG
TATGCTTCTGTTCCCTTCAGCGATCGTCACACACCTCGGTTTCCTGTTAAGAATATAATC
TTTCATCCATGAAAGAACAATTGGCCAAAACTCATTAAATTACTTTCAGAAGTGGGAATT
AAGAGGCACTCCAGCTAGATAACACCTCCCAACAACATCAGATTTAGTTAGTGCTTAGTG
ACTACTCTTAAATATATATGTATGTGTTTTCCTTAATATTATTTATCGTCATCACTACTG
CTTTTGTACCTTTTAATGGTGTTGCAGTTAAACCACTAGTACACTTGCTACAAATCACTA
ACAAAACCGGCCAGCTGAAAGGAGAGAAAAAGAGAGTGAATTCTATTCCATTGGAGAGAA
GCTGATTTATTTCAATCCTTCTTTATGTATCACTGAAGGAAAAGAGTTGTTTGGAAATCA
TTTTAAGTCCAATAAGTATGGATAGCATGTTATCTGAAAATTTTAATTTGTACATTTTGG
TGTTCGATCATTTGCATGGAAGAGACAATAGTGCCACGTCTGGATTGTTCTCTTGTGCTT
GGTTAATATGTACTTCTCTAGATTGTTCCGTTCAAAACGACATTTCTTACTCTATGGTTT
TCAGAGGCATTCAAAGCAAAATATCGCAGTGGTCCTTTGTTTTCTGACCAATCTAAAAAT
ATCTGTGATTAAATTTAATTTGTTAGTGTAAATAAATTTCTTGCCAATGAGTATTGTTGT
TGTTAGACAACGAATGCAATAAAAAGAGAAATACTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATATCTTGTATATGAAACTTGGTAATGTCAGATAGGACCCTGAGCAGTATCATAGCCT
TATTGCCATTTTGTGTGTGTGTGTACATTGAATGGCTCATGAGATTTTAAGAGATTTTTT
AATGTATTTCTACTAAATGCATTTATCCTTCTACATGTTTATATATTTTGGTAAAATGGT
TTATTAGATATTTGGTATTTTAGTAAGATGAAATTTCCTCACATGTTTGGTTAATGCTTT
GATGTCAAGATTGCACATTGCTGAGTTGAAGCTCAGAAGTGTATGCAGCTTTGGGCATTT
TCAACTGCAGACTGCAGTTTCCTTGGCTGAAAATTGCATTGTGTGTTCTGGTGCATTTGC
TCATGCTCTAAAATGACATTTGGTCGCTGTGATGCTTAAGTCACTAATTACTGGGTCTCT
GATGGCAGTGTTGCTATCACATGACCATGTATTTACTTCTTTTGCAAAGTGATGACATGG
CTAGGTCATCACCAAATATAACACAAGAGGATATGAGCGTGAGTATGTTGTTGGAAGGTG
TATGCTTCTGTTCCCTTCAGCGATCGTCACACACCTCGGTTTCCTGTTAAGAATATAATC
TTTCATCCATGAAAGAACAATTGGCCAAAACTCATTAAATTACTTTCAGAAGTGGGAATT
AAGAGGCACTCCAGCTAGATAACACCTCCCAACAACATCAGATTTAGTTAGTGCTTAGTG
ACTACTCTTAAATATATATGTATGTGTTTTCCTTAATATTATTTATCGTCATCACTACTG
CTTTTGTACCTTTTAATGGTGTTGCAGTTAAACCACTAGTACACTTGCTACAAATCACTA
ACAAAACCGGCCAGCTGAAAGGAGAGAAAAAGAGAGTGAATTCTATTCCATTGGAGAGAA
GCTGATTTATTTCAATCCTTCTTTATGTATCACTGAAGGAAAAGAGTTGTTTGGAAATCA
TTTTAAGTCCAATAAGTATGGATAGCATGTTATCTGAAAATTTTAATTTGTACATTTTGG
TGTTCGATCATTTGCATGGAAGAGACAATAGTGCCACGTCTGGATTGTTCTCTTGTGCTT
GGTTAATATGTACTTCTCTAGATTGTTCCGTTCAAAACGACATTTCTTACTCTATGGTTT
TCAGAGGCATTCAAAGCAAAATATCGCAGTGGTCCTTTGTTTTCTGACCAATCTAAAAAT
ATCTGTGATTAAATTTAATTTGTTAGTGTAAATAAATTTCTTGCCAATGAGTATTGTTGT
TGTTAGACAACGAATGCAATAAAAAGAGAAATACTAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               215-367, - strand, RNAz p=0.966751
               

               
               405-517, - strand, RNAz p=0.995978

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-367, - strand, RNAz p=0.966751
               

               
               405-517, - strand, RNAz p=0.995978

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               72-1297, gnl|bosTau2|chr4 (2480892-2482117)
               

               
               72-1297, gnl|Hg17|chr7 (94569193-94570363)
               

               
               72-1297, gnl|Mm7|chr6 (5117315-5118543)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-1297, gnl|bosTau2|chr4 (2480892-2482117)
               

               
               72-1297, gnl|Hg17|chr7 (94569193-94570363)
               

               
               72-1297, gnl|Mm7|chr6 (5117315-5118543)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fco (0.314416)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	215-367, - strand, RNAz p=0.966751
	405-517, - strand, RNAz p=0.995978

	72-1297, gnl\|bosTau2\|chr4 (2480892-2482117)
	72-1297, gnl\|Hg17\|chr7 (94569193-94570363)
	72-1297, gnl\|Mm7\|chr6 (5117315-5118543)

	fco (0.314416)
	lin (0.291206)
	ova (0.258264)
	ret (0.257467)
	tra (0.246184)
	tes (0.207814)
	nlu (0.191681)
	gul (0.177588)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	ski (0.146735)
	pty (0.142714)
	kid (0.129735)
	pgl (0.118483)
	ebs (0.118301)
	spc (0.113366)