Ss1.1-Pig4-TMW8058F12.3.5
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CCAGGCATGGCAGCAGCCCGCACAGCAGGTCCCAAGCCAGCAGAGCCAGCCGCAGAGCAG
CCAGCCCGACTACAGCAAGGCCTGGGAAGACTATTACAAAAAGCAGAGTCACGCGGCCAG
CGCCGCTCCTCAGGCCAGCTCCCCGCCGGACTACACAATGGCCTGGGCGGAATATTACAG
ACAGCAGGTCGCTTTCTACGGGCAGACATTAGGGCAAGCTCAGGCCCACAGCCAGGAACA
GTAGGACATTGACCCCCGGCTCCCTCCACCCCGAAATCATTGTGAGCAAAAACCTATTTG
TAACAGAGGTTTTTAGATTTGCAAACCTTTTGATGAAGAACCTTTGTTTTCTGTGAAACA
CTATATTTAGATTAACAGAATTTTTCTAAAAATCGGAAAAATAGTTACTAAAAAATTGCT
GATAATTTTTGTTTGTTACTTCAAATGTGTAAGCTCTGGGATTCCTTTTGGAGCAATACC
TGCAAATTCAGGCACCAGAATGTGCCTCAGAGCAGTGACATTTCAACATGGTGTGTTTTG
TTTTGTTTTGTTTTGTTTTTTGTTTTTGCGTGTCTTTTTATTTACAGTTTTTTCTGTTGC
AACAGAAAGTGGCTTGGAAGTCTTAGGTGGTTTGTAACAAATTCTTTAAAAAAATTTTTA
AACAGTATTTAAATATTCTTAAATGTGTAAATTCATTAAATGTTTTACTTTTAATTTCTT
GTACCTTGGCTGTCTGGTTTTATTGCATTTTTAAAAAAACTGAACTATTATGTATTGTAA
TTAATGATGTGAATTCTGAATTGAGACAGATAATTGTATTGCTGTCCAACAGGGATCGGG
AGGGGGCATTTTATAGGGTTTGTATAATTTCTAGAGTTCTAAAGGGGTAATAATATAAAA
ATGTGTTCGTGTGTTTAGACGTTTTTTTCATGTCTCCATTACCTACCGGTTGCAATTGTG
TATCTAAGACCTCCAAGCTTGTTTTAAAAACAAAACAAAAAACCTTTCTCTGTTCTCTCA
GAAGTATAAATACTGTTATTTTTAATATTAAAAATAAATTCAGTATAACTTTTAACAAAC
ACTGTGGAACATTAAACCGCATAAAAATGTAGTTAACTATTTTTTAATTCCAAGGTGTTT
TTTGCTTTTTTTCTTTTAAATATTTTCTTAATATTTGTCAAATTAACTAGATGGATAAAT
AAATCTAGTATTAACCACAGTATGAATTAAATAATTTTGATTTAATGAAAGGGATAATAT
GATTTCCAGTGTTTACTGTAGTGTATCTTGTACAGATAACATGTATTTTTAAAAGAAAGA
AAAACGGAATTGAAGCTATTTTTTCTTGCATTTTTCAATTGACCTGAGGGACATTCCGTT
TGAGATGTACTGAAGTTATAATTTCTGGGTTTTTTTTCTTTAGTTTCCTTACAATGCTTG
AAATGTCTAACTATTAAAAAAGGCAATTGGAAGATGTTATATGCATGTTGTTTTTAAAAA
AAAAAAAGTGTTCTTTTTATTTGACTGACAATTCATTTTACACTCTACATAATAAAATTT
CCACAAGACCTCTTGTGGGCAAAG
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CCAGGCATGGCAGCAGCCCGCACAGCAGGTCCCAAGCCAGCAGAGCCAGCCGCAGAGCAG
CCAGCCCGACTACAGCAAGGCCTGGGAAGACTATTACAAAAAGCAGAGTCACGCGGCCAG
CGCCGCTCCTCAGGCCAGCTCCCCGCCGGACTACACAATGGCCTGGGCGGAATATTACAG
ACAGCAGGTCGCTTTCTACGGGCAGACATTAGGGCAAGCTCAGGCCCACAGCCAGGAACA
GTAGGACATTGACCCCCGGCTCCCTCCACCCCGAAATCATTGTGAGCAAAAACCTATTTG
TAACAGAGGTTTTTAGATTTGCAAACCTTTTGATGAAGAACCTTTGTTTTCTGTGAAACA
CTATATTTAGATTAACAGAATTTTTCTAAAAATCGGAAAAATAGTTACTAAAAAATTGCT
GATAATTTTTGTTTGTTACTTCAAATGTGTAAGCTCTGGGATTCCTTTTGGAGCAATACC
TGCAAATTCAGGCACCAGAATGTGCCTCAGAGCAGTGACATTTCAACATGGTGTGTTTTG
TTTTGTTTTGTTTTGTTTTTTGTTTTTGCGTGTCTTTTTATTTACAGTTTTTTCTGTTGC
AACAGAAAGTGGCTTGGAAGTCTTAGGTGGTTTGTAACAAATTCTTTAAAAAAATTTTTA
AACAGTATTTAAATATTCTTAAATGTGTAAATTCATTAAATGTTTTACTTTTAATTTCTT
GTACCTTGGCTGTCTGGTTTTATTGCATTTTTAAAAAAACTGAACTATTATGTATTGTAA
TTAATGATGTGAATTCTGAATTGAGACAGATAATTGTATTGCTGTCCAACAGGGATCGGG
AGGGGGCATTTTATAGGGTTTGTATAATTTCTAGAGTTCTAAAGGGGTAATAATATAAAA
ATGTGTTCGTGTGTTTAGACGTTTTTTTCATGTCTCCATTACCTACCGGTTGCAATTGTG
TATCTAAGACCTCCAAGCTTGTTTTAAAAACAAAACAAAAAACCTTTCTCTGTTCTCTCA
GAAGTATAAATACTGTTATTTTTAATATTAAAAATAAATTCAGTATAACTTTTAACAAAC
ACTGTGGAACATTAAACCGCATAAAAATGTAGTTAACTATTTTTTAATTCCAAGGTGTTT
TTTGCTTTTTTTCTTTTAAATATTTTCTTAATATTTGTCAAATTAACTAGATGGATAAAT
AAATCTAGTATTAACCACAGTATGAATTAAATAATTTTGATTTAATGAAAGGGATAATAT
GATTTCCAGTGTTTACTGTAGTGTATCTTGTACAGATAACATGTATTTTTAAAAGAAAGA
AAAACGGAATTGAAGCTATTTTTTCTTGCATTTTTCAATTGACCTGAGGGACATTCCGTT
TGAGATGTACTGAAGTTATAATTTCTGGGTTTTTTTTCTTTAGTTTCCTTACAATGCTTG
AAATGTCTAACTATTAAAAAAGGCAATTGGAAGATGTTATATGCATGTTGTTTTTAAAAA
AAAAAAAGTGTTCTTTTTATTTGACTGACAATTCATTTTACACTCTACATAATAAAATTT
CCACAAGACCTCTTGTGGGCAAAG
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
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33-149, gnl|bosTau2|chr11 (81233326-81233441) |
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33-149, gnl|canFam2|chr9 (56665833-56665746) |
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33-149, gnl|danRer3|chrNA (175024281-175024197) |
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33-149, gnl|dasNov1|scaffold_9522 (48342-48429) |
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33-149, gnl|echTel1|scaffold_319412 (81-168) |
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33-149, gnl|fr1|chrUn (226981290-226981366) |
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33-149, gnl|galGal2|chr17 (4905114-4905033) |
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33-149, gnl|hg17|chr9 (130539606-130539693) |
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33-149, gnl|Hg17|chr9 (130539605-130539713) |
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33-149, gnl|loxAfr1|scaffold_16054 (29576-29664) |
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33-149, gnl|mm7|chr2 (31622020-31622102) |
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33-149, gnl|monDom2|scaffold_51 (5884745-5884828) |
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33-149, gnl|oryCun1|scaffold_153115 (3845-3932) |
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33-149, gnl|panTro1|chr11 (115416850-115416937) |
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33-149, gnl|rheMac2|chr15 (8187347-8187260) |
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33-149, gnl|rn3|chr3 (10619559-10619641) |
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33-149, gnl|tetNig1|chr4 (2628056-2628003) |
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33-149, gnl|xenTro1|scaffold_983 (82472-82392) |
| |
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238-1584, gnl|bosTau2|chr11 (81235621-81236989) |
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238-1584, gnl|Hg17|chr9 (130541951-130543291) |
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238-1584, gnl|Mm7|chr2 (31623486-31624829) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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33-149, gnl|bosTau2|chr11 (81233326-81233441) |
|
33-149, gnl|canFam2|chr9 (56665833-56665746) |
|
33-149, gnl|danRer3|chrNA (175024281-175024197) |
|
33-149, gnl|dasNov1|scaffold_9522 (48342-48429) |
|
33-149, gnl|echTel1|scaffold_319412 (81-168) |
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33-149, gnl|fr1|chrUn (226981290-226981366) |
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33-149, gnl|galGal2|chr17 (4905114-4905033) |
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33-149, gnl|hg17|chr9 (130539606-130539693) |
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33-149, gnl|Hg17|chr9 (130539605-130539713) |
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33-149, gnl|loxAfr1|scaffold_16054 (29576-29664) |
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33-149, gnl|mm7|chr2 (31622020-31622102) |
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33-149, gnl|monDom2|scaffold_51 (5884745-5884828) |
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33-149, gnl|oryCun1|scaffold_153115 (3845-3932) |
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33-149, gnl|panTro1|chr11 (115416850-115416937) |
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33-149, gnl|rheMac2|chr15 (8187347-8187260) |
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33-149, gnl|rn3|chr3 (10619559-10619641) |
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33-149, gnl|tetNig1|chr4 (2628056-2628003) |
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33-149, gnl|xenTro1|scaffold_983 (82472-82392) |
| |
|
238-1584, gnl|bosTau2|chr11 (81235621-81236989) |
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238-1584, gnl|Hg17|chr9 (130541951-130543291) |
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238-1584, gnl|Mm7|chr2 (31623486-31624829) |
|
eye (0.341006) |
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cbe (0.239234) |
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tes (0.207814) |
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jej (0.197844) |
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col (0.195008) |
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fbs (0.175346) |
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mcp (0.170648) |
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cki (0.165235) |
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spl (0.143184) |
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nca (0.136874) |
|
ute (0.132784) |
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ret (0.128733) |
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bla (0.124347) |
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nbm (0.0993246) |
|
eye (0.341006) |
|
cbe (0.239234) |
|
tes (0.207814) |
|
jej (0.197844) |
|
col (0.195008) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
spl (0.143184) |
|
nca (0.136874) |
|
ute (0.132784) |
|
ret (0.128733) |
|
bla (0.124347) |
|
nbm (0.0993246) |
