Non-Coding RNA Search

Ss1.1-Pig4-TMW8058G07.5.5

Sequence:


               
               CAAGCTTATGAAGGAAATTTCATCAACGAAGAAAGCAACAGAAGGAAAGACATCACTTAG
TGCTCTTGCCCAACTGATGAAAAAGATGCCCCATTTCCGTAAGCAGATTACTAAGCAAGT
TGTTCATCTTAATTTAGCAGAAGATTGCATGAATAAGTTCAAGCCTAATATAGAAAAGCT
CTGCAAAACTGAACAGGACCTGGCGCTTGGAACTGATGCAGAAGGACAGAAAGTCAAAGA
TTCTATGCGAGTACTCCTTCCAGTTTTACTCAACAAAAATCATGATACTTACGATAAAAT
AAGAGCAATCCTACTTTATATCTTCAGTATTAACGGAACTACAGAAGAAAACCTGGACAG
ATTGATCCAGAATGTAAAGATAGAAAATGAGAGTGACATGATTCGAAACTGGAGTTACCT
GGGTGTTCCCATTGTCCCTCCATCTCAACAAGGCAAACCATTAAGAAAGGATCGGTCTGC
AGAAGAAACTTTTCAACTCTCTCGATGGACACCCTTTATCAAAGATATTTTGGAGGATGC
CATTGAGAATAGATTAGATTCAAAAGAATGGCCGTATTGTTCCCAGTGTCCAGCAGTATG
GAATGGCTCCGGAGCTGTAAGTGCTCGGCAGAAACCCAGAGCTAATTATTTAGAGGATCG
AAAAAATGGGTCTAAGCTGATTGTTTTTGTAATTGGAGGAATTACATACTCTGAAATGCG
TTGTGCTTATGAAGTTTCTCAGGCACATAAATCCTGTGAAGTTATTATTGGTTCCACGCA
TATTTTAACACCCAAAAAGCTGTTGGATGATATAAAGATGCTGAATAAACCCAAGGATAA
AGTCTCCTTTATTAAAGATGGAGAATAATCCATGCAGGGGAAGAATTGGAGATCCTTATT
ACTTGTTCAACTAAAATGACATGTTCACCTAAAATAGATTGAGACATTGTTGCTATCATG
TAATTTAAACAATGTAAATATTTTAAGGTATAATGACTTTTCAGATGTATTTCTTAAAAG
ATTGTTTATGATTAAATATCATTGGTTTTGCCCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGCTTATGAAGGAAATTTCATCAACGAAGAAAGCAACAGAAGGAAAGACATCACTTAG
TGCTCTTGCCCAACTGATGAAAAAGATGCCCCATTTCCGTAAGCAGATTACTAAGCAAGT
TGTTCATCTTAATTTAGCAGAAGATTGCATGAATAAGTTCAAGCCTAATATAGAAAAGCT
CTGCAAAACTGAACAGGACCTGGCGCTTGGAACTGATGCAGAAGGACAGAAAGTCAAAGA
TTCTATGCGAGTACTCCTTCCAGTTTTACTCAACAAAAATCATGATACTTACGATAAAAT
AAGAGCAATCCTACTTTATATCTTCAGTATTAACGGAACTACAGAAGAAAACCTGGACAG
ATTGATCCAGAATGTAAAGATAGAAAATGAGAGTGACATGATTCGAAACTGGAGTTACCT
GGGTGTTCCCATTGTCCCTCCATCTCAACAAGGCAAACCATTAAGAAAGGATCGGTCTGC
AGAAGAAACTTTTCAACTCTCTCGATGGACACCCTTTATCAAAGATATTTTGGAGGATGC
CATTGAGAATAGATTAGATTCAAAAGAATGGCCGTATTGTTCCCAGTGTCCAGCAGTATG
GAATGGCTCCGGAGCTGTAAGTGCTCGGCAGAAACCCAGAGCTAATTATTTAGAGGATCG
AAAAAATGGGTCTAAGCTGATTGTTTTTGTAATTGGAGGAATTACATACTCTGAAATGCG
TTGTGCTTATGAAGTTTCTCAGGCACATAAATCCTGTGAAGTTATTATTGGTTCCACGCA
TATTTTAACACCCAAAAAGCTGTTGGATGATATAAAGATGCTGAATAAACCCAAGGATAA
AGTCTCCTTTATTAAAGATGGAGAATAATCCATGCAGGGGAAGAATTGGAGATCCTTATT
ACTTGTTCAACTAAAATGACATGTTCACCTAAAATAGATTGAGACATTGTTGCTATCATG
TAATTTAAACAATGTAAATATTTTAAGGTATAATGACTTTTCAGATGTATTTCTTAAAAG
ATTGTTTATGATTAAATATCATTGGTTTTGCCCCTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50750918|ref|XP_422184.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50750918|ref|XP_422184.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               770-888, - strand, RNAz p=0.900135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               770-888, - strand, RNAz p=0.900135

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               195-345, gnl|bosTau2|chr3 (31570295-31570145)
               

               
               195-345, gnl|canFam2|chr6 (46015201-46015050)
               

               
               195-345, gnl|danRer3|chr25 (10344569-10344715)
               

               
               195-345, gnl|dasNov1|scaffold_2927 (8762-8614)
               

               
               195-345, gnl|echTel1|scaffold_235661 (2183-2030)
               

               
               195-345, gnl|fr1|chrUn (177291662-177291514)
               

               
               195-345, gnl|galGal2|chr8 (1255888-1256031)
               

               
               195-345, gnl|hg17|chr1 (109050897-109051050)
               

               
               195-345, gnl|Hg17|chr1 (109050896-109051046)
               

               
               195-345, gnl|loxAfr1|scaffold_36433 (16722-16875)
               

               
               195-345, gnl|mm7|chr3 (108619164-108619015)
               

               
               195-345, gnl|Mm7|chr3 (108619162-108619014)
               

               
               195-345, gnl|monDom2|scaffold_0 (7951723-7951572)
               

               
               195-345, gnl|panTro1|chr1 (107977254-107977407)
               

               
               195-345, gnl|rheMac2|chr1 (111785901-111786054)
               

               
               195-345, gnl|rn3|chr2 (204366655-204366506)
               

               
               195-345, gnl|tetNig1|chrUn_random (45794880-45794741)
               


               
               770-1052, gnl|bosTau2|chr3 (31557130-31556868)
               

               
               770-1052, gnl|Hg17|chr1 (109063446-109063703)
               

               
               770-1052, gnl|Mm7|chr3 (108612153-108611914)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               195-345, gnl|bosTau2|chr3 (31570295-31570145)
               

               
               195-345, gnl|canFam2|chr6 (46015201-46015050)
               

               
               195-345, gnl|danRer3|chr25 (10344569-10344715)
               

               
               195-345, gnl|dasNov1|scaffold_2927 (8762-8614)
               

               
               195-345, gnl|echTel1|scaffold_235661 (2183-2030)
               

               
               195-345, gnl|fr1|chrUn (177291662-177291514)
               

               
               195-345, gnl|galGal2|chr8 (1255888-1256031)
               

               
               195-345, gnl|hg17|chr1 (109050897-109051050)
               

               
               195-345, gnl|Hg17|chr1 (109050896-109051046)
               

               
               195-345, gnl|loxAfr1|scaffold_36433 (16722-16875)
               

               
               195-345, gnl|mm7|chr3 (108619164-108619015)
               

               
               195-345, gnl|Mm7|chr3 (108619162-108619014)
               

               
               195-345, gnl|monDom2|scaffold_0 (7951723-7951572)
               

               
               195-345, gnl|panTro1|chr1 (107977254-107977407)
               

               
               195-345, gnl|rheMac2|chr1 (111785901-111786054)
               

               
               195-345, gnl|rn3|chr2 (204366655-204366506)
               

               
               195-345, gnl|tetNig1|chrUn_random (45794880-45794741)
               


               
               770-1052, gnl|bosTau2|chr3 (31557130-31556868)
               

               
               770-1052, gnl|Hg17|chr1 (109063446-109063703)
               

               
               770-1052, gnl|Mm7|chr3 (108612153-108611914)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               aor (0.585823)
               

               
               elu (0.385356)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               elu (0.385356)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	195-345, gnl\|bosTau2\|chr3 (31570295-31570145)
	195-345, gnl\|canFam2\|chr6 (46015201-46015050)
	195-345, gnl\|danRer3\|chr25 (10344569-10344715)
	195-345, gnl\|dasNov1\|scaffold_2927 (8762-8614)
	195-345, gnl\|echTel1\|scaffold_235661 (2183-2030)
	195-345, gnl\|fr1\|chrUn (177291662-177291514)
	195-345, gnl\|galGal2\|chr8 (1255888-1256031)
	195-345, gnl\|hg17\|chr1 (109050897-109051050)
	195-345, gnl\|Hg17\|chr1 (109050896-109051046)
	195-345, gnl\|loxAfr1\|scaffold_36433 (16722-16875)
	195-345, gnl\|mm7\|chr3 (108619164-108619015)
	195-345, gnl\|Mm7\|chr3 (108619162-108619014)
	195-345, gnl\|monDom2\|scaffold_0 (7951723-7951572)
	195-345, gnl\|panTro1\|chr1 (107977254-107977407)
	195-345, gnl\|rheMac2\|chr1 (111785901-111786054)
	195-345, gnl\|rn3\|chr2 (204366655-204366506)
	195-345, gnl\|tetNig1\|chrUn_random (45794880-45794741)

	770-1052, gnl\|bosTau2\|chr3 (31557130-31556868)
	770-1052, gnl\|Hg17\|chr1 (109063446-109063703)
	770-1052, gnl\|Mm7\|chr3 (108612153-108611914)

	aor (0.585823)
	elu (0.385356)
	cbe (0.239234)
	spc (0.226732)
	mgm (0.180343)
	gul (0.177588)
	rec (0.17307)
	nco (0.161734)
	lin (0.145603)
	ssp (0.13552)
	med (0.116252)
	eje (0.0988338)