Non-Coding RNA Search

Ss1.1-Pig4-TMW8058G10.3

Sequence:


               
               CAAACCCACATCCTCATGGATACTAGTTGGATTTGTTTCTGCTGTGCCACAATAGGAACT
CCTTCTTTTCCTTATTTTTAAAAGATTAAAAACCTTTAAAGTTCTTAACTTATCCCTTGC
TTATAACTTTTCAGCTGATATTTTAGAATTCCTTTTCCAAATAATTTTCCTGGAACTACT
CAGTGAAATGAGAAACAATTATAATTATATCTAAATAGCTAAATTATATCTTTCTAAAAA
TTAAAAGGAGAGATGTTATTAAAGTGCCAGTGAGTGAATACCTTAGGCACAACATAAATA
GAAACTGAAATGTGATTTATGGTTCAATTCCATGAGTAGAAAAGGACATATTGAAGAATA
TATTTCATTGAAAGTTCATAGTCACATCCACAAATCAATACTGTCATTGTAACGTTAATT
ATTATTTTTATACAACATATATTGAAGTACAGTTATATAGAACTGCTGGTACTGTTAATT
CTGACACTCAGGAAGCTGTAATTGGTGTAAAATTAATTTCATCCTTGTTAGAGATGAAGT
AAGATACTTTATTATAAGGAAGCTTACCTTTCTATCTTGGAGCATGTATGTAATGGTCTA
TGTTTTTGTCAGATGATTTAGAGAACATTTCTTTTAGTGGAATAATTACCTCTTTTTTTC
AGATTTGGAGAGGTTAGCACTTGTCTTGAAAAGCATTATATTTTTCCCCAAAGTTGTATC
AGCCAGTTAGCTCTGGTCCAGAGAGGTTAGTTTTAGAAAGATCAAAAAAAACCCACAGAT
ATTAATTATATTTTATTTGGTTAATAAAGAATACTCAAAGGATAGGTAGTTGGGTATCTA
TAGGAGTGAGCTCTTACCATTTTGTATGTTGTTTTGAGTAACGGGTGTTTGTTTATTGTA
TTATTTGTGAACAAATACTTTTTTTTCACCTTTTAAAGATTTGCCTATTGTTTTGTGTTG
CTAGCTTTAAAAAAATTTGATTTATTTAATTTCTTTCTTATGTAAAAATAAAATATGTAA
AGCACCTTGTATGGTGTCTTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACCCACATCCTCATGGATACTAGTTGGATTTGTTTCTGCTGTGCCACAATAGGAACT
CCTTCTTTTCCTTATTTTTAAAAGATTAAAAACCTTTAAAGTTCTTAACTTATCCCTTGC
TTATAACTTTTCAGCTGATATTTTAGAATTCCTTTTCCAAATAATTTTCCTGGAACTACT
CAGTGAAATGAGAAACAATTATAATTATATCTAAATAGCTAAATTATATCTTTCTAAAAA
TTAAAAGGAGAGATGTTATTAAAGTGCCAGTGAGTGAATACCTTAGGCACAACATAAATA
GAAACTGAAATGTGATTTATGGTTCAATTCCATGAGTAGAAAAGGACATATTGAAGAATA
TATTTCATTGAAAGTTCATAGTCACATCCACAAATCAATACTGTCATTGTAACGTTAATT
ATTATTTTTATACAACATATATTGAAGTACAGTTATATAGAACTGCTGGTACTGTTAATT
CTGACACTCAGGAAGCTGTAATTGGTGTAAAATTAATTTCATCCTTGTTAGAGATGAAGT
AAGATACTTTATTATAAGGAAGCTTACCTTTCTATCTTGGAGCATGTATGTAATGGTCTA
TGTTTTTGTCAGATGATTTAGAGAACATTTCTTTTAGTGGAATAATTACCTCTTTTTTTC
AGATTTGGAGAGGTTAGCACTTGTCTTGAAAAGCATTATATTTTTCCCCAAAGTTGTATC
AGCCAGTTAGCTCTGGTCCAGAGAGGTTAGTTTTAGAAAGATCAAAAAAAACCCACAGAT
ATTAATTATATTTTATTTGGTTAATAAAGAATACTCAAAGGATAGGTAGTTGGGTATCTA
TAGGAGTGAGCTCTTACCATTTTGTATGTTGTTTTGAGTAACGGGTGTTTGTTTATTGTA
TTATTTGTGAACAAATACTTTTTTTTCACCTTTTAAAGATTTGCCTATTGTTTTGTGTTG
CTAGCTTTAAAAAAATTTGATTTATTTAATTTCTTTCTTATGTAAAAATAAAATATGTAA
AGCACCTTGTATGGTGTCTTGCAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               63-1041, gnl|bosTau2|chr20 (19882492-19881576)
               

               
               63-1041, gnl|Hg17|chr5 (40751175-40750219)
               

               
               63-1041, gnl|Mm7|chr15 (5043288-5044600)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-1041, gnl|bosTau2|chr20 (19882492-19881576)
               

               
               63-1041, gnl|Hg17|chr5 (40751175-40750219)
               

               
               63-1041, gnl|Mm7|chr15 (5043288-5044600)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fco (0.314416)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               thg (0.126791)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               thg (0.126791)

	63-1041, gnl\|bosTau2\|chr20 (19882492-19881576)
	63-1041, gnl\|Hg17\|chr5 (40751175-40750219)
	63-1041, gnl\|Mm7\|chr15 (5043288-5044600)

	fco (0.314416)
	mas (0.210305)
	aor (0.195274)
	ton (0.1755)
	thg (0.126791)