Ss1.1-Pig4-TMW8058G11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATGAGACAGCTTCTACATATGTTCCCCTTGCACAGCAGGTCGAAGCCTTTCATAAGCG AACCCCTAACAGATACCACTTGAGGAGCAAGAAGGATGATAGTACTCTGCTACCCTCCAA ATCTGTGGCCAAGATATGCAGAGACCCACAGACTCCTGTGCTACAAACCAAACATCGTGC AAGGCCTGTGACCTGCAAAAGTACAGCGGATCAGGAGGCCGAGGAGCTTGAGAAACTGCA GCAATACAAATTCAAAGCACAGGAACTTGATCCCAGAATTCTTGAAGGTGGGCCCATCTT GCCCAAGAAACCACCTGTGAAGCCACCCACTCAGCCTATTGGCTTTGATTTGGAAATTGA GAAAAGGATCCAGGAGCGAGAGTCAAAGAAGAAATCTGAGGATGAACACTTTGAATTTCA TTCCAGGCCTTGCCCTACTAAGATCTTGGAAGATGTTGTGGGTGTTCCTGAAAAGAAAGT ACTTCCAGTCACTGTCCCCAAGTCACCAGCCTTTACTCTGAAGAACAGAATCCGAATGCC CTCCAAAGAAGATGAGGAAGAGGAGGAGCCAGTAGTGATAAGAGCTCAACCTGTGCCATA TTTTGGAATGCCTTTTAAGCCCCAAATTCCAGTGGGGAGAACTGTGGAAATATGCCCCTT CTCTTTTGATTCTCGAGACAAAAAACGTCAGTTACAGAAGGAGAAGAAAATAAAAGAACT GCAGAAAGGGGAGGTGCCTAAGTTCAAGGCACTACCTTTGCCTCATTTTGACACCGTTAA CCTGCCAGAGAAGAAGGTGAAGAATACAACCCAGGTTGAGCCTTTCTGCTTGGAGACTGA CAGAAGAGGTGCTCTGAAGGCACAAACTTGGAAGCACCAGCTGGAGGAAGAACTAAAACA GCAGAAAGAAGCAGCTTGCTTCAAGGCTCGTCCAAACACCGTCATCTCCCAGGAGCCCTT CGTTCCTAAGATAGAGAAAAAATCCCTTACTGAGGGCCTTTCTGGTTCTCTAGTCCAGGA AACTTTTCAGCTGGCCACTGAGAAGAGAGCCAGGGAGCGGCAGGAGCTGGAGAAGAGAAT GGCTGAGGTGGAAGCCCAGAAAGCTCAGCAGCTGGAGGAGGCCAGGCAACAGGAAGAGGA GCAGCAGAGGCAGGAACTGGCCAGGCTACGGAAAGAATTGGTGCACAAGGCAAATCCAAT ACGCAAGTACCAGAGTGTGGAGGTCAAGTCAAGTGACCAGCCACTGACCATGCCTGTATC GCCCAAGTTTTCCACTCGATTCCACTGCTGAACTTAGCTGCGAGCTGATGCCACTTGGGA ACCGGAGCTGCTCCTTCCATCAAACCAGGAGGCTTCTTTGTCACGGGGGCGTGGAGAGAA CCCATTTCTCCAGGCTTTTCCCTACCCATGACCCACAGAGTATGCCGGACAAGTGTGGAC TCCAGTTTCATTGAAACTTGTTTTTCCTGTGTTATTGTGGCTAATAGTGAGACTCACCTT ATGTATGTCTCAGCCGGACTCCGTGTAGTCATTTCCTTTCAACCGTCAGTTGCCCTTTAA TATGGGTCTTAACTCTGACTAGAATTTAAAGCCCTTGCATTAGTACAGTGTAATTTCTAT TGCCCTTGCCCCTCCCCCCTTTCCTATTTTAATCAGAAAATAAAGATAGTTAAATACTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATGAGACAGCTTCTACATATGTTCCCCTTGCACAGCAGGTCGAAGCCTTTCATAAGCG AACCCCTAACAGATACCACTTGAGGAGCAAGAAGGATGATAGTACTCTGCTACCCTCCAA ATCTGTGGCCAAGATATGCAGAGACCCACAGACTCCTGTGCTACAAACCAAACATCGTGC AAGGCCTGTGACCTGCAAAAGTACAGCGGATCAGGAGGCCGAGGAGCTTGAGAAACTGCA GCAATACAAATTCAAAGCACAGGAACTTGATCCCAGAATTCTTGAAGGTGGGCCCATCTT GCCCAAGAAACCACCTGTGAAGCCACCCACTCAGCCTATTGGCTTTGATTTGGAAATTGA GAAAAGGATCCAGGAGCGAGAGTCAAAGAAGAAATCTGAGGATGAACACTTTGAATTTCA TTCCAGGCCTTGCCCTACTAAGATCTTGGAAGATGTTGTGGGTGTTCCTGAAAAGAAAGT ACTTCCAGTCACTGTCCCCAAGTCACCAGCCTTTACTCTGAAGAACAGAATCCGAATGCC CTCCAAAGAAGATGAGGAAGAGGAGGAGCCAGTAGTGATAAGAGCTCAACCTGTGCCATA TTTTGGAATGCCTTTTAAGCCCCAAATTCCAGTGGGGAGAACTGTGGAAATATGCCCCTT CTCTTTTGATTCTCGAGACAAAAAACGTCAGTTACAGAAGGAGAAGAAAATAAAAGAACT GCAGAAAGGGGAGGTGCCTAAGTTCAAGGCACTACCTTTGCCTCATTTTGACACCGTTAA CCTGCCAGAGAAGAAGGTGAAGAATACAACCCAGGTTGAGCCTTTCTGCTTGGAGACTGA CAGAAGAGGTGCTCTGAAGGCACAAACTTGGAAGCACCAGCTGGAGGAAGAACTAAAACA GCAGAAAGAAGCAGCTTGCTTCAAGGCTCGTCCAAACACCGTCATCTCCCAGGAGCCCTT CGTTCCTAAGATAGAGAAAAAATCCCTTACTGAGGGCCTTTCTGGTTCTCTAGTCCAGGA AACTTTTCAGCTGGCCACTGAGAAGAGAGCCAGGGAGCGGCAGGAGCTGGAGAAGAGAAT GGCTGAGGTGGAAGCCCAGAAAGCTCAGCAGCTGGAGGAGGCCAGGCAACAGGAAGAGGA GCAGCAGAGGCAGGAACTGGCCAGGCTACGGAAAGAATTGGTGCACAAGGCAAATCCAAT ACGCAAGTACCAGAGTGTGGAGGTCAAGTCAAGTGACCAGCCACTGACCATGCCTGTATC GCCCAAGTTTTCCACTCGATTCCACTGCTGAACTTAGCTGCGAGCTGATGCCACTTGGGA ACCGGAGCTGCTCCTTCCATCAAACCAGGAGGCTTCTTTGTCACGGGGGCGTGGAGAGAA CCCATTTCTCCAGGCTTTTCCCTACCCATGACCCACAGAGTATGCCGGACAAGTGTGGAC TCCAGTTTCATTGAAACTTGTTTTTCCTGTGTTATTGTGGCTAATAGTGAGACTCACCTT ATGTATGTCTCAGCCGGACTCCGTGTAGTCATTTCCTTTCAACCGTCAGTTGCCCTTTAA TATGGGTCTTAACTCTGACTAGAATTTAAAGCCCTTGCATTAGTACAGTGTAATTTCTAT TGCCCTTGCCCCTCCCCCCTTTCCTATTTTAATCAGAAAATAAAGATAGTTAAATACTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 634-832, - strand, RNAz p=0.993041 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 634-832, - strand, RNAz p=0.993041 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-104, gnl|bosTau2|chr13 (43995451-43995554) | |
| 1-104, gnl|canFam2|chr24 (24213493-24213680) | |
| 1-104, gnl|danRer3|chr23 (45431320-45431483) | |
| 1-104, gnl|dasNov1|scaffold_133590 (4585-4772) | |
| 1-104, gnl|echTel1|scaffold_308406 (5907-5717) | |
| 1-104, gnl|fr1|chrUn (310752651-310752806) | |
| 1-104, gnl|galGal2|chr20 (9615223-9615414) | |
| 1-104, gnl|hg17|chr20 (29830264-29830454) | |
| 1-104, gnl|Hg17|chr20 (29830345-29830448) | |
| 1-104, gnl|loxAfr1|scaffold_10355 (28568-28371) | |
| 1-104, gnl|mm7|chr2 (152623038-152623225) | |
| 1-104, gnl|Mm7|chr2 (152623119-152623219) | |
| 1-104, gnl|monDom2|scaffold_38 (1339174-1338984) | |
| 1-104, gnl|oryCun1|scaffold_210023 (232432-232622) | |
| 1-104, gnl|panTro1|chr21 (31524875-31525065) | |
| 1-104, gnl|rheMac2|chr10 (32789998-32789808) | |
| 1-104, gnl|rn3|chr3 (143130916-143131103) | |
| 240-871, gnl|bosTau2|chr18 (16035398-16036012) | |
| 240-871, gnl|Mm7|chr4 (54867515-54868112) | |
| 244-461, gnl|bosTau2|chr13 (43998289-43998506) | |
| 244-461, gnl|canFam2|chr24 (24218741-24219000) | |
| 244-461, gnl|danRer3|chr23 (45432044-45432298) | |
| 244-461, gnl|dasNov1|scaffold_28555 (14686-14425) | |
| 244-461, gnl|echTel1|scaffold_308406 (855-597) | |
| 244-461, gnl|fr1|chrUn (310753118-310753365) | |
| 244-461, gnl|galGal2|chr20 (9616068-9616316) | |
| 244-461, gnl|hg17|chr20 (29835143-29835395) | |
| 244-461, gnl|Hg17|chr20 (29835169-29835386) | |
| 244-461, gnl|loxAfr1|scaffold_10355 (25630-25372) | |
| 244-461, gnl|mm7|chr2 (152625856-152626098) | |
| 244-461, gnl|Mm7|chr2 (152625868-152626085) | |
| 244-461, gnl|monDom2|scaffold_38 (1334136-1333903) | |
| 244-461, gnl|oryCun1|scaffold_210023 (235363-235625) | |
| 244-461, gnl|panTro1|chr21 (31529736-31529988) | |
| 244-461, gnl|rheMac2|chr10 (32785054-32784802) | |
| 244-461, gnl|rn3|chr3 (143134415-143134657) | |
| 244-461, gnl|xenTro1|scaffold_1206 (7166-7390) | |
| 555-736, gnl|bosTau2|chr13 (44006826-44007007) | |
| 555-736, gnl|Hg17|chr20 (29845310-29845491) | |
| 555-736, gnl|Mm7|chr2 (152630001-152630182) | |
| 878-989, gnl|bosTau2|chr13 (44009236-44009347) | |
| 878-989, gnl|canFam2|chr24 (24235657-24235785) | |
| 878-989, gnl|danRer3|chr23 (45434925-45435043) | |
| 878-989, gnl|echTel1|scaffold_162446 (2679-2802) | |
| 878-989, gnl|fr1|chrUn (310754084-310754182) | |
| 878-989, gnl|galGal2|chr20 (9618055-9618178) | |
| 878-989, gnl|hg17|chr20 (29848837-29848965) | |
| 878-989, gnl|Hg17|chr20 (29848865-29848976) | |
| 878-989, gnl|loxAfr1|scaffold_48828 (8446-8317) | |
| 878-989, gnl|mm7|chr2 (152632272-152632397) | |
| 878-989, gnl|Mm7|chr2 (152632297-152632408) | |
| 878-989, gnl|monDom2|scaffold_38 (1321326-1321187) | |
| 878-989, gnl|oryCun1|scaffold_142931 (6455-6583) | |
| 878-989, gnl|panTro1|chr21 (31543741-31543869) | |
| 878-989, gnl|rheMac2|chr10 (32771922-32771794) | |
| 878-989, gnl|rn3|chr3 (143139039-143139166) | |
| 878-989, gnl|xenTro1|scaffold_1206 (8353-8477) | |
| 1180-1680, gnl|bosTau2|chr13 (44011995-44012493) | |
| 1180-1680, gnl|Hg17|chr20 (29852433-29852960) | |
| 1180-1680, gnl|Mm7|chr2 (152634440-152634876) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-104, gnl|bosTau2|chr13 (43995451-43995554) | |
| 1-104, gnl|canFam2|chr24 (24213493-24213680) | |
| 1-104, gnl|danRer3|chr23 (45431320-45431483) | |
| 1-104, gnl|dasNov1|scaffold_133590 (4585-4772) | |
| 1-104, gnl|echTel1|scaffold_308406 (5907-5717) | |
| 1-104, gnl|fr1|chrUn (310752651-310752806) | |
| 1-104, gnl|galGal2|chr20 (9615223-9615414) | |
| 1-104, gnl|hg17|chr20 (29830264-29830454) | |
| 1-104, gnl|Hg17|chr20 (29830345-29830448) | |
| 1-104, gnl|loxAfr1|scaffold_10355 (28568-28371) | |
| 1-104, gnl|mm7|chr2 (152623038-152623225) | |
| 1-104, gnl|Mm7|chr2 (152623119-152623219) | |
| 1-104, gnl|monDom2|scaffold_38 (1339174-1338984) | |
| 1-104, gnl|oryCun1|scaffold_210023 (232432-232622) | |
| 1-104, gnl|panTro1|chr21 (31524875-31525065) | |
| 1-104, gnl|rheMac2|chr10 (32789998-32789808) | |
| 1-104, gnl|rn3|chr3 (143130916-143131103) | |
| 240-871, gnl|bosTau2|chr18 (16035398-16036012) | |
| 240-871, gnl|Mm7|chr4 (54867515-54868112) | |
| 244-461, gnl|bosTau2|chr13 (43998289-43998506) | |
| 244-461, gnl|canFam2|chr24 (24218741-24219000) | |
| 244-461, gnl|danRer3|chr23 (45432044-45432298) | |
| 244-461, gnl|dasNov1|scaffold_28555 (14686-14425) | |
| 244-461, gnl|echTel1|scaffold_308406 (855-597) | |
| 244-461, gnl|fr1|chrUn (310753118-310753365) | |
| 244-461, gnl|galGal2|chr20 (9616068-9616316) | |
| 244-461, gnl|hg17|chr20 (29835143-29835395) | |
| 244-461, gnl|Hg17|chr20 (29835169-29835386) | |
| 244-461, gnl|loxAfr1|scaffold_10355 (25630-25372) | |
| 244-461, gnl|mm7|chr2 (152625856-152626098) | |
| 244-461, gnl|Mm7|chr2 (152625868-152626085) | |
| 244-461, gnl|monDom2|scaffold_38 (1334136-1333903) | |
| 244-461, gnl|oryCun1|scaffold_210023 (235363-235625) | |
| 244-461, gnl|panTro1|chr21 (31529736-31529988) | |
| 244-461, gnl|rheMac2|chr10 (32785054-32784802) | |
| 244-461, gnl|rn3|chr3 (143134415-143134657) | |
| 244-461, gnl|xenTro1|scaffold_1206 (7166-7390) | |
| 555-736, gnl|bosTau2|chr13 (44006826-44007007) | |
| 555-736, gnl|Hg17|chr20 (29845310-29845491) | |
| 555-736, gnl|Mm7|chr2 (152630001-152630182) | |
| 878-989, gnl|bosTau2|chr13 (44009236-44009347) | |
| 878-989, gnl|canFam2|chr24 (24235657-24235785) | |
| 878-989, gnl|danRer3|chr23 (45434925-45435043) | |
| 878-989, gnl|echTel1|scaffold_162446 (2679-2802) | |
| 878-989, gnl|fr1|chrUn (310754084-310754182) | |
| 878-989, gnl|galGal2|chr20 (9618055-9618178) | |
| 878-989, gnl|hg17|chr20 (29848837-29848965) | |
| 878-989, gnl|Hg17|chr20 (29848865-29848976) | |
| 878-989, gnl|loxAfr1|scaffold_48828 (8446-8317) | |
| 878-989, gnl|mm7|chr2 (152632272-152632397) | |
| 878-989, gnl|Mm7|chr2 (152632297-152632408) | |
| 878-989, gnl|monDom2|scaffold_38 (1321326-1321187) | |
| 878-989, gnl|oryCun1|scaffold_142931 (6455-6583) | |
| 878-989, gnl|panTro1|chr21 (31543741-31543869) | |
| 878-989, gnl|rheMac2|chr10 (32771922-32771794) | |
| 878-989, gnl|rn3|chr3 (143139039-143139166) | |
| 878-989, gnl|xenTro1|scaffold_1206 (8353-8477) | |
| 1180-1680, gnl|bosTau2|chr13 (44011995-44012493) | |
| 1180-1680, gnl|Hg17|chr20 (29852433-29852960) | |
| 1180-1680, gnl|Mm7|chr2 (152634440-152634876) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| elu (0.385356) | |
| clu (0.239292) | |
| fty (0.17584) | |
| csp (0.161186) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cbl (0.114797) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| clu (0.239292) | |
| fty (0.17584) | |
| csp (0.161186) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cbl (0.114797) |