Ss1.1-Pig4-TMW8058G18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGCTGAGGCCGGCCCCGCCGTTCTCGCTTTTGCACGCCCTGCTTTCCAACGCCACTTA CGAGCCTAGCGAGCGGTGTCGCGGGCGTAACGTCATCGCGACGCGTCGCGGGAGTACGGA AGAAGCCTCGACCTCTCTAAGCGTGGGGAGCTGCGCGACAATGCTGCAGCTAGTCCGGGC TGGGGCGCGGACATGGTTTCGGCCCAGCGGCTGCCGGGGCCTGAACACCCTAGCAGAAGA GGCAGTGCAGCAGGCGGAGAAGCCAGAATCAGTGGCGAGTTTGGGTCTCCAGCCGCCCGT GTTGCGCAAATGCGAGCTCCCGGTACCTGCGCACCGGCGTCCGGTGCAGGCCTGGATCGA GTCCCTGCGGGGCTACGAGCAGGAGCGCGTGGGTTTGACTGAGCTGCACCCAGATGTTTT CTCTACGGCGCCCAGGCTAGATATCCTGCACCAGGTTGCCATCTGGCAGAAGAACTTCAA GAGAATTAGCTATGCCAAGACCAAGACAAGGGCCGAGGTGCGAGGTGGTGGGCGGAAGCC CTGGGTGCAGAAAGGCAGTGGGCGTGCCAGGCATGGCAGCATCCGCTCCCCGATCTGGCG AGGAGGAGGCGTTGCCCACGGCCCCCGGGGCCCCACGAGCTACTACTACATGCTGCCCAT GAAAGTGCGGGTGCAGGGCCTCAAGGTGGCGCTGACTGTCAAACTGGCCCAGGACGACCT GCACATCGTGGACTCCCTGGAGCTGCCGACTGCAGACCCCCAGTACCTGATAGAGCTGGC CCGCTACCGCCGCTGGGGTGACTCTGTCCTCCTCGTGGACTTGGAACACGAGGACATGCC TCAGAACGTTGTGGCAGCCACCTCCGGGCTCAAGACCTTCAACCTGGTCCCTGCTGTTGG GCTTGTGGTCCTCAGCATGCTCAAGCACCAGACCCTGGTCCTGACCCTGCCGACCGTTGC CTTCCTGGAGGAGAAGCTGCTCTGGCACAACTCGCGCTACACACCCCTCTACCCCTTCCG CCTGCCCTACTGCGACTTCCCCTGAGCCCCTTCCCTGCACCTTTCATGGCCTTCCATGGC CCATCGGCGCCCTCCTTCTTGCTGTCCTGCTCTGAGCCAGGTTGAGCCCCTGACGGGCTT GGGAGCCTCCCATTCGCCCTGGAAGGCATTGCCCAGCCCCCCTCGTCCCAGGTGGGGGCA GAGGCCACAGTCAGAGTAGCCCAGCAGGCATCACTACAGGAAGGTGGGGAGGCACAGCTC TCCAGAGAGCCTGACCGAGCTTCTGCCCCAGGTGTCTCTTTTGTGTAAGATAAATTTTTA ATTTTTTAAGCCAAGAGGAGAACCAAACAGCTCGTTACCATTTTGTGAATAATTCCATTT GGCAAGTTGGGCTCCTTCTGTGGTGCTGGGCACCGCTGGGTACCTCTCCTCAAGGGGCAT CGGCACTGTTTATAGAAATGACCCACCATCAGCTTTCCTGGGTGAGTCAGCCTTGGGGAG TGGCGCCTCCTGATTGCCAAGCACTCTCAATAAAGGCTTGCATCCCTCACAGGGCTTGTG GTCCTTCAGTCCAAGTGTGGGCCTGAGTCCACAGAGGGTACAGTGTGGAAACCTGAACTT TCATCACAGTGATTTTCCAGAAGCACAGAGTCAGGATCAATGTAGTAGGTAAATGAGCAA ATAAACTTTCTTAAAACACCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGCTGAGGCCGGCCCCGCCGTTCTCGCTTTTGCACGCCCTGCTTTCCAACGCCACTTA CGAGCCTAGCGAGCGGTGTCGCGGGCGTAACGTCATCGCGACGCGTCGCGGGAGTACGGA AGAAGCCTCGACCTCTCTAAGCGTGGGGAGCTGCGCGACAATGCTGCAGCTAGTCCGGGC TGGGGCGCGGACATGGTTTCGGCCCAGCGGCTGCCGGGGCCTGAACACCCTAGCAGAAGA GGCAGTGCAGCAGGCGGAGAAGCCAGAATCAGTGGCGAGTTTGGGTCTCCAGCCGCCCGT GTTGCGCAAATGCGAGCTCCCGGTACCTGCGCACCGGCGTCCGGTGCAGGCCTGGATCGA GTCCCTGCGGGGCTACGAGCAGGAGCGCGTGGGTTTGACTGAGCTGCACCCAGATGTTTT CTCTACGGCGCCCAGGCTAGATATCCTGCACCAGGTTGCCATCTGGCAGAAGAACTTCAA GAGAATTAGCTATGCCAAGACCAAGACAAGGGCCGAGGTGCGAGGTGGTGGGCGGAAGCC CTGGGTGCAGAAAGGCAGTGGGCGTGCCAGGCATGGCAGCATCCGCTCCCCGATCTGGCG AGGAGGAGGCGTTGCCCACGGCCCCCGGGGCCCCACGAGCTACTACTACATGCTGCCCAT GAAAGTGCGGGTGCAGGGCCTCAAGGTGGCGCTGACTGTCAAACTGGCCCAGGACGACCT GCACATCGTGGACTCCCTGGAGCTGCCGACTGCAGACCCCCAGTACCTGATAGAGCTGGC CCGCTACCGCCGCTGGGGTGACTCTGTCCTCCTCGTGGACTTGGAACACGAGGACATGCC TCAGAACGTTGTGGCAGCCACCTCCGGGCTCAAGACCTTCAACCTGGTCCCTGCTGTTGG GCTTGTGGTCCTCAGCATGCTCAAGCACCAGACCCTGGTCCTGACCCTGCCGACCGTTGC CTTCCTGGAGGAGAAGCTGCTCTGGCACAACTCGCGCTACACACCCCTCTACCCCTTCCG CCTGCCCTACTGCGACTTCCCCTGAGCCCCTTCCCTGCACCTTTCATGGCCTTCCATGGC CCATCGGCGCCCTCCTTCTTGCTGTCCTGCTCTGAGCCAGGTTGAGCCCCTGACGGGCTT GGGAGCCTCCCATTCGCCCTGGAAGGCATTGCCCAGCCCCCCTCGTCCCAGGTGGGGGCA GAGGCCACAGTCAGAGTAGCCCAGCAGGCATCACTACAGGAAGGTGGGGAGGCACAGCTC TCCAGAGAGCCTGACCGAGCTTCTGCCCCAGGTGTCTCTTTTGTGTAAGATAAATTTTTA ATTTTTTAAGCCAAGAGGAGAACCAAACAGCTCGTTACCATTTTGTGAATAATTCCATTT GGCAAGTTGGGCTCCTTCTGTGGTGCTGGGCACCGCTGGGTACCTCTCCTCAAGGGGCAT CGGCACTGTTTATAGAAATGACCCACCATCAGCTTTCCTGGGTGAGTCAGCCTTGGGGAG TGGCGCCTCCTGATTGCCAAGCACTCTCAATAAAGGCTTGCATCCCTCACAGGGCTTGTG GTCCTTCAGTCCAAGTGTGGGCCTGAGTCCACAGAGGGTACAGTGTGGAAACCTGAACTT TCATCACAGTGATTTTCCAGAAGCACAGAGTCAGGATCAATGTAGTAGGTAAATGAGCAA ATAAACTTTCTTAAAACACCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1067-1656, - strand, RNAz p=0.925624 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1067-1656, - strand, RNAz p=0.925624 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-218, gnl|bosTau2|chr7 (9573717-9573500) | |
| 1-218, gnl|Hg17|chr19 (10223770-10223987) | |
| 284-436, gnl|bosTau2|chr7 (9573270-9573118) | |
| 284-436, gnl|canFam2|chr20 (53845963-53845805) | |
| 284-436, gnl|danRer3|chr11 (7825621-7825466) | |
| 284-436, gnl|dasNov1|scaffold_230924 (553-703) | |
| 284-436, gnl|echTel1|scaffold_275101 (9289-9131) | |
| 284-436, gnl|fr1|chrUn (145019007-145019164) | |
| 284-436, gnl|hg17|chr19 (10224225-10224383) | |
| 284-436, gnl|Hg17|chr19 (10224226-10224378) | |
| 284-436, gnl|loxAfr1|scaffold_209638 (516-676) | |
| 284-436, gnl|mm7|chr9 (20879810-20879968) | |
| 284-436, gnl|Mm7|chr9 (20879811-20879963) | |
| 284-436, gnl|monDom2|scaffold_106 (1956129-1956281) | |
| 284-436, gnl|oryCun1|scaffold_45044 (509-667) | |
| 284-436, gnl|panTro1|chr20 (10606381-10606539) | |
| 284-436, gnl|rheMac2|chr19 (10063515-10063673) | |
| 284-436, gnl|rn3|chr8 (20026608-20026766) | |
| 284-436, gnl|tetNig1|chrUn_random (88800570-88800727) | |
| 284-436, gnl|xenTro1|scaffold_56 (2715325-2715495) | |
| 604-713, gnl|bosTau2|chr7 (9566866-9566757) | |
| 604-713, gnl|Hg17|chr19 (10229896-10230005) | |
| 604-713, gnl|Mm7|chr9 (20883990-20884099) | |
| 908-1251, gnl|bosTau2|chr7 (9565266-9564952) | |
| 908-1251, gnl|Hg17|chr19 (10231301-10231644) | |
| 1500-1713, gnl|bosTau2|chr10 (54600982-54600767) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-218, gnl|bosTau2|chr7 (9573717-9573500) | |
| 1-218, gnl|Hg17|chr19 (10223770-10223987) | |
| 284-436, gnl|bosTau2|chr7 (9573270-9573118) | |
| 284-436, gnl|canFam2|chr20 (53845963-53845805) | |
| 284-436, gnl|danRer3|chr11 (7825621-7825466) | |
| 284-436, gnl|dasNov1|scaffold_230924 (553-703) | |
| 284-436, gnl|echTel1|scaffold_275101 (9289-9131) | |
| 284-436, gnl|fr1|chrUn (145019007-145019164) | |
| 284-436, gnl|hg17|chr19 (10224225-10224383) | |
| 284-436, gnl|Hg17|chr19 (10224226-10224378) | |
| 284-436, gnl|loxAfr1|scaffold_209638 (516-676) | |
| 284-436, gnl|mm7|chr9 (20879810-20879968) | |
| 284-436, gnl|Mm7|chr9 (20879811-20879963) | |
| 284-436, gnl|monDom2|scaffold_106 (1956129-1956281) | |
| 284-436, gnl|oryCun1|scaffold_45044 (509-667) | |
| 284-436, gnl|panTro1|chr20 (10606381-10606539) | |
| 284-436, gnl|rheMac2|chr19 (10063515-10063673) | |
| 284-436, gnl|rn3|chr8 (20026608-20026766) | |
| 284-436, gnl|tetNig1|chrUn_random (88800570-88800727) | |
| 284-436, gnl|xenTro1|scaffold_56 (2715325-2715495) | |
| 604-713, gnl|bosTau2|chr7 (9566866-9566757) | |
| 604-713, gnl|Hg17|chr19 (10229896-10230005) | |
| 604-713, gnl|Mm7|chr9 (20883990-20884099) | |
| 908-1251, gnl|bosTau2|chr7 (9565266-9564952) | |
| 908-1251, gnl|Hg17|chr19 (10231301-10231644) | |
| 1500-1713, gnl|bosTau2|chr10 (54600982-54600767) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| nco (0.323468) | |
| cty (0.31224) | |
| hlv (0.278513) | |
| cov (0.264306) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| clu (0.119646) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.323468) | |
| cty (0.31224) | |
| hlv (0.278513) | |
| cov (0.264306) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| clu (0.119646) | |
| nbm (0.0993246) | |
| eje (0.0988338) |