Ss1.1-Pig4-TMW8058G21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAGGCAGCGGCGGCGTGGGGAGCGTTGGGAGCGGTGGCGGCGCGCGACCCGAGCTTGTA AAAATGGAATTTCAAGCAGTGGTAATGGCAGTTGGAGGGGGCTCTCGGATGACAGACCTG ACCTCCAGTGTTCCCAAACCTCTGCTTCCAGTTGGGAACAAACCTTTAATATGGTACCCA TTGAACCTGCTGGAACGCGTTGGATTTGAAGAAGTCATTGTCATTACAACCAGGGATGTC CAGAAGGCTCTATGTGCAGACTTCAAGATGAAAATGAAGCTAGATATTGTGTGTATTGCT GATGACGCTGACATAGGAACTGCAGATTCTCTGCGCTACATATATCAGAAACTTAAGACA GATGTTTTGGTCCTGAGTTGTGATCTGATAACAGATGTTGCCTTACATGAGGTTGTGGAC CTGTTTAGAGCTCATGATGCGACCCTCGCCATGTTAATGAGAAAAGGCCAAGACGGCTTG GAATCAGTTCCAGGTCAAAAGGGGAAAAAAAAAGCAGTGGAGCAGCGTGACTTCGTTGGA GTGGACAGCACGGGAAAGAGGCTGCTCTTCATGGCTAATGAAGCAGACTTGGATGAGGAG CTGGTCATTAAGGGAGCCATCCTGCAGAAGCACCCTCGGATACGTTTCCACACGGGCCTC GTGGACGCGCACCTCTACTGCTTGAGAAGATACGTCGTGGACTTCCTCATGGAATATAAG TCAATCACTTCCATCCGGAGTGAACTGATCCCATACTTAGTGAGAAAACAGTTCTCCTCA GCTTCATCACAACAAGGACAAGAAGAGAAAGAGGAGGAGCTAAAGAAAAAGGAGCTGAAG ACTTTAGATATTTACAGCTTTATAAAAGAAGTCGGGCCGCTGACCTTTGCTCTCCACGAT GCCTGCTGGAATGCCTGTCGAGGAGACAGCCGGGAAGACTTGTCCAGATCACAGGTGCGC TGCTATGTCCACATCATGAAGGAGGGGCTCTGCTCTCGAGTGGGCACCCTAGGACTCTAC ATGGAGGCAAACAGACAGGTGTCCAAATTGCTACCTGTTATCTGTCCAGAAGAAACACTG GTGCATCCATCAGCCCAGATTGTCAGCAAACACCTGATCGGAGCTGACAGCCTCATTGGG CCAGATACACAGGTTGGCGAGAAGTCCTCCGTTAAGCGCTCGGTCATTGGGTCATCCTGT GTCATAAGAGATAGAGTGACTGTCACCAACTCCCTTCTCATGAACTCAGTCACCGTGGAG GAGGGAAGCAACATCCAGGGCAGCGTCATCTGCAACAACGCCGTGATCGAGAAGGGAGCA GACATCAAAGACTGCCTCATTGGAAATGGCCAGAGGATTGAAGCGAAAGCCAGACGAGTG AACGAAGTAGTCGTGGGGAGCGACCAGCTCATGGAGATCTGAGTTCCGAGCAAGTCACAC TTCTTCCTCTTGGCCCTGGAACTGCAGGTGTTGGCTGGCCCACCTCTTTGATTCTGTATT TATTTCCCAATAAAAGAAGGGCTCCCAGAGGCGTGCTGGAGACTTGTGGAAGAGTCCCGA GCTCCGCATCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAGGCAGCGGCGGCGTGGGGAGCGTTGGGAGCGGTGGCGGCGCGCGACCCGAGCTTGTA AAAATGGAATTTCAAGCAGTGGTAATGGCAGTTGGAGGGGGCTCTCGGATGACAGACCTG ACCTCCAGTGTTCCCAAACCTCTGCTTCCAGTTGGGAACAAACCTTTAATATGGTACCCA TTGAACCTGCTGGAACGCGTTGGATTTGAAGAAGTCATTGTCATTACAACCAGGGATGTC CAGAAGGCTCTATGTGCAGACTTCAAGATGAAAATGAAGCTAGATATTGTGTGTATTGCT GATGACGCTGACATAGGAACTGCAGATTCTCTGCGCTACATATATCAGAAACTTAAGACA GATGTTTTGGTCCTGAGTTGTGATCTGATAACAGATGTTGCCTTACATGAGGTTGTGGAC CTGTTTAGAGCTCATGATGCGACCCTCGCCATGTTAATGAGAAAAGGCCAAGACGGCTTG GAATCAGTTCCAGGTCAAAAGGGGAAAAAAAAAGCAGTGGAGCAGCGTGACTTCGTTGGA GTGGACAGCACGGGAAAGAGGCTGCTCTTCATGGCTAATGAAGCAGACTTGGATGAGGAG CTGGTCATTAAGGGAGCCATCCTGCAGAAGCACCCTCGGATACGTTTCCACACGGGCCTC GTGGACGCGCACCTCTACTGCTTGAGAAGATACGTCGTGGACTTCCTCATGGAATATAAG TCAATCACTTCCATCCGGAGTGAACTGATCCCATACTTAGTGAGAAAACAGTTCTCCTCA GCTTCATCACAACAAGGACAAGAAGAGAAAGAGGAGGAGCTAAAGAAAAAGGAGCTGAAG ACTTTAGATATTTACAGCTTTATAAAAGAAGTCGGGCCGCTGACCTTTGCTCTCCACGAT GCCTGCTGGAATGCCTGTCGAGGAGACAGCCGGGAAGACTTGTCCAGATCACAGGTGCGC TGCTATGTCCACATCATGAAGGAGGGGCTCTGCTCTCGAGTGGGCACCCTAGGACTCTAC ATGGAGGCAAACAGACAGGTGTCCAAATTGCTACCTGTTATCTGTCCAGAAGAAACACTG GTGCATCCATCAGCCCAGATTGTCAGCAAACACCTGATCGGAGCTGACAGCCTCATTGGG CCAGATACACAGGTTGGCGAGAAGTCCTCCGTTAAGCGCTCGGTCATTGGGTCATCCTGT GTCATAAGAGATAGAGTGACTGTCACCAACTCCCTTCTCATGAACTCAGTCACCGTGGAG GAGGGAAGCAACATCCAGGGCAGCGTCATCTGCAACAACGCCGTGATCGAGAAGGGAGCA GACATCAAAGACTGCCTCATTGGAAATGGCCAGAGGATTGAAGCGAAAGCCAGACGAGTG AACGAAGTAGTCGTGGGGAGCGACCAGCTCATGGAGATCTGAGTTCCGAGCAAGTCACAC TTCTTCCTCTTGGCCCTGGAACTGCAGGTGTTGGCTGGCCCACCTCTTTGATTCTGTATT TATTTCCCAATAAAAGAAGGGCTCCCAGAGGCGTGCTGGAGACTTGTGGAAGAGTCCCGA GCTCCGCATCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 75-194, - strand, RNAz p=0.528901 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 75-194, - strand, RNAz p=0.528901 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 36-355, gnl|bosTau2|chr28 (2199140-2198824) | |
| 36-355, gnl|Hg17|chr1 (45115950-45113082) | |
| 356-529, gnl|bosTau2|chr3 (68270588-68270415) | |
| 356-529, gnl|canFam2|chr15 (18386537-18386419) | |
| 356-529, gnl|danRer3|chr2 (24447785-24447673) | |
| 356-529, gnl|dasNov1|scaffold_94562 (2367-2246) | |
| 356-529, gnl|echTel1|scaffold_300562 (8448-8327) | |
| 356-529, gnl|fr1|chrUn (302391041-302390928) | |
| 356-529, gnl|galGal2|chr8 (21151348-21151468) | |
| 356-529, gnl|hg17|chr1 (45076260-45076381) | |
| 356-529, gnl|Hg17|chr1 (45076432-45076258) | |
| 356-529, gnl|loxAfr1|scaffold_30331 (31968-32089) | |
| 356-529, gnl|mm7|chr4 (116421046-116420926) | |
| 356-529, gnl|Mm7|chr4 (116420873-116421046) | |
| 356-529, gnl|monDom2|scaffold_70 (7847112-7846990) | |
| 356-529, gnl|panTro1|chr1_random (65600345-65600224) | |
| 356-529, gnl|rheMac2|chr1 (47868744-47868865) | |
| 356-529, gnl|rn3|chr5 (137355496-137355376) | |
| 356-529, gnl|tetNig1|chr15 (5958834-5958715) | |
| 356-529, gnl|xenTro1|scaffold_313 (1247279-1247158) | |
| 846-1041, gnl|bosTau2|chr3 (68220828-68220633) | |
| 846-1041, gnl|Hg17|chr1 (45014775-45014580) | |
| 846-1041, gnl|Mm7|chr4 (116442811-116443006) | |
| 1120-1265, gnl|bosTau2|chr3 (68218221-68218076) | |
| 1120-1265, gnl|canFam2|chr15 (18456180-18455996) | |
| 1120-1265, gnl|danRer3|chr2 (24472730-24472573) | |
| 1120-1265, gnl|dasNov1|scaffold_130442 (3774-3959) | |
| 1120-1265, gnl|echTel1|scaffold_285221 (9919-10098) | |
| 1120-1265, gnl|galGal2|chr8 (21098959-21099124) | |
| 1120-1265, gnl|hg17|chr1 (45009411-45009595) | |
| 1120-1265, gnl|Hg17|chr1 (45009588-45009443) | |
| 1120-1265, gnl|loxAfr1|scaffold_8536 (10257-10441) | |
| 1120-1265, gnl|mm7|chr4 (116447254-116447076) | |
| 1120-1265, gnl|Mm7|chr4 (116447081-116447226) | |
| 1120-1265, gnl|monDom2|scaffold_70 (7900234-7900065) | |
| 1120-1265, gnl|oryCun1|scaffold_198390 (84817-85001) | |
| 1120-1265, gnl|panTro1|chr1_random (65665741-65665557) | |
| 1120-1265, gnl|rheMac2|chr1 (47795549-47795733) | |
| 1120-1265, gnl|rn3|chr5 (137386404-137386227) | |
| 1120-1265, gnl|tetNig1|chr15 (5963255-5963102) | |
| 1368-1555, gnl|bosTau2|chr3 (68198149-68197964) | |
| 1368-1555, gnl|Hg17|chr1 (44985770-44985583) | |
| 1368-1555, gnl|Mm7|chr4 (116463126-116463378) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-355, gnl|bosTau2|chr28 (2199140-2198824) | |
| 36-355, gnl|Hg17|chr1 (45115950-45113082) | |
| 356-529, gnl|bosTau2|chr3 (68270588-68270415) | |
| 356-529, gnl|canFam2|chr15 (18386537-18386419) | |
| 356-529, gnl|danRer3|chr2 (24447785-24447673) | |
| 356-529, gnl|dasNov1|scaffold_94562 (2367-2246) | |
| 356-529, gnl|echTel1|scaffold_300562 (8448-8327) | |
| 356-529, gnl|fr1|chrUn (302391041-302390928) | |
| 356-529, gnl|galGal2|chr8 (21151348-21151468) | |
| 356-529, gnl|hg17|chr1 (45076260-45076381) | |
| 356-529, gnl|Hg17|chr1 (45076432-45076258) | |
| 356-529, gnl|loxAfr1|scaffold_30331 (31968-32089) | |
| 356-529, gnl|mm7|chr4 (116421046-116420926) | |
| 356-529, gnl|Mm7|chr4 (116420873-116421046) | |
| 356-529, gnl|monDom2|scaffold_70 (7847112-7846990) | |
| 356-529, gnl|panTro1|chr1_random (65600345-65600224) | |
| 356-529, gnl|rheMac2|chr1 (47868744-47868865) | |
| 356-529, gnl|rn3|chr5 (137355496-137355376) | |
| 356-529, gnl|tetNig1|chr15 (5958834-5958715) | |
| 356-529, gnl|xenTro1|scaffold_313 (1247279-1247158) | |
| 846-1041, gnl|bosTau2|chr3 (68220828-68220633) | |
| 846-1041, gnl|Hg17|chr1 (45014775-45014580) | |
| 846-1041, gnl|Mm7|chr4 (116442811-116443006) | |
| 1120-1265, gnl|bosTau2|chr3 (68218221-68218076) | |
| 1120-1265, gnl|canFam2|chr15 (18456180-18455996) | |
| 1120-1265, gnl|danRer3|chr2 (24472730-24472573) | |
| 1120-1265, gnl|dasNov1|scaffold_130442 (3774-3959) | |
| 1120-1265, gnl|echTel1|scaffold_285221 (9919-10098) | |
| 1120-1265, gnl|galGal2|chr8 (21098959-21099124) | |
| 1120-1265, gnl|hg17|chr1 (45009411-45009595) | |
| 1120-1265, gnl|Hg17|chr1 (45009588-45009443) | |
| 1120-1265, gnl|loxAfr1|scaffold_8536 (10257-10441) | |
| 1120-1265, gnl|mm7|chr4 (116447254-116447076) | |
| 1120-1265, gnl|Mm7|chr4 (116447081-116447226) | |
| 1120-1265, gnl|monDom2|scaffold_70 (7900234-7900065) | |
| 1120-1265, gnl|oryCun1|scaffold_198390 (84817-85001) | |
| 1120-1265, gnl|panTro1|chr1_random (65665741-65665557) | |
| 1120-1265, gnl|rheMac2|chr1 (47795549-47795733) | |
| 1120-1265, gnl|rn3|chr5 (137386404-137386227) | |
| 1120-1265, gnl|tetNig1|chr15 (5963255-5963102) | |
| 1368-1555, gnl|bosTau2|chr3 (68198149-68197964) | |
| 1368-1555, gnl|Hg17|chr1 (44985770-44985583) | |
| 1368-1555, gnl|Mm7|chr4 (116463126-116463378) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| fli (0.202881) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ova (0.129132) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ova (0.129132) | |
| ecc (0.115035) | |
| nbm (0.0993246) |