Ss1.1-Pig4-TMW8058G22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGACCCAACTGGAGCATTTGAGAAAGAAATGATTGACAGAATTCCCTGTGGTCGGCTA GGAACTGTGGAAGAACTTGCAAATCTTGCTACTTTCCTTTGCAGTGATTATGCTTCTTGG ATTAATGGAGCTACAATTAGATTTGATGGTGGGGAGCAAGTACTACTTTCAGGGGAATTC AACCATCTGCGGAAGGTTACCAAGGAACAGTGGGATACAATAGAAGGACTCATCAGGAAG ACAAAAGGCTCCTAAGACTACTCTGGCCTCCATCATGGTTATAATGGAAATGATACAAAC TCTCTGTAATCTTTTGAGTATTTTTGAGTCTAATGATTGTTAATTAGCAGACATTCATTG GGTATGTGTTATGTGCAAGGCTAACGATAGGTAAATCTTGAATATTAAAAGGTAAATAAG ATGGGATATTGTCCCTGCAAAGAGTTTTTTAAAAATAATACAAAAAAGGAAAGTGAATGC AGGCTTTGATAGAGGTAAAAAGTGCTTGGAAGTGCAGATAAAGGACTTGTGAGTTATCTT CTTTATATAGCTCAATATTAATTCAAACAAGTTTTTGCCAGGGACCTATTTTGTAGCCAG ATGTTTTATTTGGTATTGAAAATAAGCCATGAATAATCTCAGCCTTTGCCCTCTTAAAAC TCATTATCAGGATAAATAGATCTCTAAATAATTATTTATGATATGTTGTGATAAATATTA TTCCAGATTCCAGCAGCATAAAAATGTGGAGGAGGAAGTAATTCATCCTATCTCTAGAAT TTAGAAAAAGTGATATCTAAGAGCATTCTATCTCAGCTTTTAAGGGAAAATATATTCTCT GTGTAGAATAAAGCTTATAAAATATTTTTGTGTATAATTTTATTTCAGTCCATATTTGGT TTGACTGATTTGTCATCCTAAGTATCAAATTAGATATCCCAAGTTTATGTGGCTGTAATT TTGAGTTTATATTTTAAAAATTATTTTACTTTCATAGGAGTCACTCATTACATGCTCACT ACATCGACTTTCCCCATTGCCCAAACCTCCTCTGAACAGATCTGTAAAGGAATCTAGTTT TCCTGTTTGAATTTATATGCTATAAGCCTAATATGCAAATCCTTATTATATTGACAGTTA ATTTTGTACATAAATTACATTAAATTATATACATAAATGGGTAATGTTAGAGGTTTAGAA TGAGTGGGCCAGATATTTGCAATATTTTTGGCTTTCATTGGGGTACCATACCCAATCTCC ATTTTACCTTTAACATTAACCATAGTTTTCCTCTCTTCTATCTACATCTTTCTTGTTTTA TAATTATCAGTACTTCAAAAAAAGTCCCAGTAGTTATATAAATGACCTTTTATAAGTTTG TCATTTCTTATTTTCTTCCTGATGAAATTCATGATTATAATATCTGTTTCACTAGGTTAT GATTGAGATGAAACAATTAAAAACACCATGTAAATGTAAAAAAGACCCTCCTGTTTCTGT ACTTTTTGATTTTAAGACATGATTATCATAGAAAAATGTAAAAATACAAAAGAATAAAAA ATTTTTTTTTTTGTCAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGACCCAACTGGAGCATTTGAGAAAGAAATGATTGACAGAATTCCCTGTGGTCGGCTA GGAACTGTGGAAGAACTTGCAAATCTTGCTACTTTCCTTTGCAGTGATTATGCTTCTTGG ATTAATGGAGCTACAATTAGATTTGATGGTGGGGAGCAAGTACTACTTTCAGGGGAATTC AACCATCTGCGGAAGGTTACCAAGGAACAGTGGGATACAATAGAAGGACTCATCAGGAAG ACAAAAGGCTCCTAAGACTACTCTGGCCTCCATCATGGTTATAATGGAAATGATACAAAC TCTCTGTAATCTTTTGAGTATTTTTGAGTCTAATGATTGTTAATTAGCAGACATTCATTG GGTATGTGTTATGTGCAAGGCTAACGATAGGTAAATCTTGAATATTAAAAGGTAAATAAG ATGGGATATTGTCCCTGCAAAGAGTTTTTTAAAAATAATACAAAAAAGGAAAGTGAATGC AGGCTTTGATAGAGGTAAAAAGTGCTTGGAAGTGCAGATAAAGGACTTGTGAGTTATCTT CTTTATATAGCTCAATATTAATTCAAACAAGTTTTTGCCAGGGACCTATTTTGTAGCCAG ATGTTTTATTTGGTATTGAAAATAAGCCATGAATAATCTCAGCCTTTGCCCTCTTAAAAC TCATTATCAGGATAAATAGATCTCTAAATAATTATTTATGATATGTTGTGATAAATATTA TTCCAGATTCCAGCAGCATAAAAATGTGGAGGAGGAAGTAATTCATCCTATCTCTAGAAT TTAGAAAAAGTGATATCTAAGAGCATTCTATCTCAGCTTTTAAGGGAAAATATATTCTCT GTGTAGAATAAAGCTTATAAAATATTTTTGTGTATAATTTTATTTCAGTCCATATTTGGT TTGACTGATTTGTCATCCTAAGTATCAAATTAGATATCCCAAGTTTATGTGGCTGTAATT TTGAGTTTATATTTTAAAAATTATTTTACTTTCATAGGAGTCACTCATTACATGCTCACT ACATCGACTTTCCCCATTGCCCAAACCTCCTCTGAACAGATCTGTAAAGGAATCTAGTTT TCCTGTTTGAATTTATATGCTATAAGCCTAATATGCAAATCCTTATTATATTGACAGTTA ATTTTGTACATAAATTACATTAAATTATATACATAAATGGGTAATGTTAGAGGTTTAGAA TGAGTGGGCCAGATATTTGCAATATTTTTGGCTTTCATTGGGGTACCATACCCAATCTCC ATTTTACCTTTAACATTAACCATAGTTTTCCTCTCTTCTATCTACATCTTTCTTGTTTTA TAATTATCAGTACTTCAAAAAAAGTCCCAGTAGTTATATAAATGACCTTTTATAAGTTTG TCATTTCTTATTTTCTTCCTGATGAAATTCATGATTATAATATCTGTTTCACTAGGTTAT GATTGAGATGAAACAATTAAAAACACCATGTAAATGTAAAAAAGACCCTCCTGTTTCTGT ACTTTTTGATTTTAAGACATGATTATCATAGAAAAATGTAAAAATACAAAAGAATAAAAA ATTTTTTTTTTTGTCAAAAAAAAA |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr14 (45838604-45838473) | |
| 1-132, gnl|canFam2|chr29 (38528338-38528497) | |
| 1-132, gnl|danRer3|chr16 (42369821-42369981) | |
| 1-132, gnl|echTel1|scaffold_2316 (2525-2366) | |
| 1-132, gnl|fr1|chrUn (152646537-152646379) | |
| 1-132, gnl|galGal2|chr2 (123743568-123743727) | |
| 1-132, gnl|hg17|chr8 (91126246-91126405) | |
| 1-132, gnl|Hg17|chr8 (91126268-91126399) | |
| 1-132, gnl|loxAfr1|scaffold_5654 (68537-68378) | |
| 1-132, gnl|mm7|chr4 (15847134-15846975) | |
| 1-132, gnl|Mm7|chr4 (15847110-15846979) | |
| 1-132, gnl|monDom2|scaffold_3 (76988924-76988765) | |
| 1-132, gnl|oryCun1|scaffold_43658 (172-331) | |
| 1-132, gnl|panTro1|chr7 (93345865-93346024) | |
| 1-132, gnl|rheMac2|chr8 (92686020-92686179) | |
| 1-132, gnl|rn3|chr5 (30493060-30492901) | |
| 1-132, gnl|tetNig1|chrUn_random (46862966-46863122) | |
| 1-132, gnl|xenTro1|scaffold_59 (2667631-2667471) | |
| 157-524, gnl|bosTau2|chr14 (45837866-45837505) | |
| 157-524, gnl|Hg17|chr8 (91133205-91133585) | |
| 548-843, gnl|bosTau2|chr14 (45837270-45836975) | |
| 548-843, gnl|Hg17|chr8 (91133776-91134034) | |
| 846-995, gnl|bosTau2|chr14 (45836715-45836557) | |
| 846-995, gnl|canFam2|chr29 (38529917-38530081) | |
| 846-995, gnl|dasNov1|scaffold_251850 (1364-1545) | |
| 846-995, gnl|echTel1|scaffold_2316 (946-793) | |
| 846-995, gnl|hg17|chr8 (91134051-91134234) | |
| 846-995, gnl|Hg17|chr8 (91134073-91134233) | |
| 846-995, gnl|mm7|chr4 (15844957-15844786) | |
| 846-995, gnl|panTro1|chr7 (93353669-93353853) | |
| 846-995, gnl|rheMac2|chr8 (92693999-92694182) | |
| 846-995, gnl|rn3|chr5 (30490144-30489973) | |
| 1062-1564, gnl|bosTau2|chr14 (45836348-45835829) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr14 (45838604-45838473) | |
| 1-132, gnl|canFam2|chr29 (38528338-38528497) | |
| 1-132, gnl|danRer3|chr16 (42369821-42369981) | |
| 1-132, gnl|echTel1|scaffold_2316 (2525-2366) | |
| 1-132, gnl|fr1|chrUn (152646537-152646379) | |
| 1-132, gnl|galGal2|chr2 (123743568-123743727) | |
| 1-132, gnl|hg17|chr8 (91126246-91126405) | |
| 1-132, gnl|Hg17|chr8 (91126268-91126399) | |
| 1-132, gnl|loxAfr1|scaffold_5654 (68537-68378) | |
| 1-132, gnl|mm7|chr4 (15847134-15846975) | |
| 1-132, gnl|Mm7|chr4 (15847110-15846979) | |
| 1-132, gnl|monDom2|scaffold_3 (76988924-76988765) | |
| 1-132, gnl|oryCun1|scaffold_43658 (172-331) | |
| 1-132, gnl|panTro1|chr7 (93345865-93346024) | |
| 1-132, gnl|rheMac2|chr8 (92686020-92686179) | |
| 1-132, gnl|rn3|chr5 (30493060-30492901) | |
| 1-132, gnl|tetNig1|chrUn_random (46862966-46863122) | |
| 1-132, gnl|xenTro1|scaffold_59 (2667631-2667471) | |
| 157-524, gnl|bosTau2|chr14 (45837866-45837505) | |
| 157-524, gnl|Hg17|chr8 (91133205-91133585) | |
| 548-843, gnl|bosTau2|chr14 (45837270-45836975) | |
| 548-843, gnl|Hg17|chr8 (91133776-91134034) | |
| 846-995, gnl|bosTau2|chr14 (45836715-45836557) | |
| 846-995, gnl|canFam2|chr29 (38529917-38530081) | |
| 846-995, gnl|dasNov1|scaffold_251850 (1364-1545) | |
| 846-995, gnl|echTel1|scaffold_2316 (946-793) | |
| 846-995, gnl|hg17|chr8 (91134051-91134234) | |
| 846-995, gnl|Hg17|chr8 (91134073-91134233) | |
| 846-995, gnl|mm7|chr4 (15844957-15844786) | |
| 846-995, gnl|panTro1|chr7 (93353669-93353853) | |
| 846-995, gnl|rheMac2|chr8 (92693999-92694182) | |
| 846-995, gnl|rn3|chr5 (30490144-30489973) | |
| 1062-1564, gnl|bosTau2|chr14 (45836348-45835829) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| kid (0.908147) | |
| lun (0.451467) | |
| liv (0.438853) | |
| tra (0.369276) | |
| rec (0.346141) | |
| mcp (0.341297) | |
| bfe (0.299715) | |
| ret (0.257467) | |
| sag (0.182715) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ste (0.135208) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.908147) | |
| lun (0.451467) | |
| liv (0.438853) | |
| tra (0.369276) | |
| rec (0.346141) | |
| mcp (0.341297) | |
| bfe (0.299715) | |
| ret (0.257467) | |
| sag (0.182715) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ste (0.135208) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| ldo (0.0970026) |