Ss1.1-Pig4-TMW8058G24.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCGGTTCGGTGGGTCGGAGATGACGGAGCCGGGCGCCTCTCCCGAGGACCCCTGGGTCA AGGTGGAGTATGCCTACAGCGACAACAGCCTGGACCCCGGGATTTTTGTAGAAAGCACTC GCAAGGGGAGTGTAGTGTCCAGAGCTAATAGCATCGGTTCCACCAGTGCCTCTTCTGTCC CCAACACAGATGACGAGGACAGCGATTACCACCAGGAATCCTACAAGGAGTCCTACAAGG ACCGGCGGCGGCGCGCGCACACTCAGGCCGAGCAGAAGAGGAGGGATGCCATCAAGAGAG GCTATGACGACCTACAGACCATCGTCCCCACCTGCCAGCAGCAGGACTTCTCCATTGGCT CCCAGAAGCTCAGCAAGGCCATCGTTCTGCAGAAGACCATTGACTACATCCAGTTTTTGC ACAAAGAGAAGAAAAAGCAGGAGGAGGAGGTGTCCACGTTGCGCAAGGACGTCATGGCCC TAAAGATCATGAAAGTGAACTATGAGCAGATAGTGAAGGCACACCAGGACAACCCCCATG AGGGGGAGGACCAGGTCTCTGACCAGGTCAAGTTCAACGTGTTTCAAGGCATCATGGACT CCCTCTTCCAGTCCTTCAACGCCTCCATCTCCGTGGCCAGCTTCCAGGAGCTGTCGGCCT GCGTCTTCAGCTGGATTGAGGAGCACTGTAAGCCTCAGACCCTACGGGAGATTGTGATTG GTGTCCTGCACCAACTGAAGAACCAGCTTTACTGACCAGCTCTTGGAACCTGCAGAACAG CCAGCAAGAGGCCTTGACTTTCCTACCTGGCCGTGGAGCCACTGGGCTTGTGAGACTGGA CTGTGACACTGCACAACGGTCAGCTTCTTGGTGTTTGGCTCCCCACCCCTCCCATCTTCA GTGGGGGAGGGTTTATTATGAAAGCTTTAATTTATTATGTTGACCGTATCTCAAACCTGC CTGGTCTCCCCTTCTCCCTGTAGAAGTCCTCAGGATGGGGGGGGTCTGCTCTGGGCACCC CAAAGAGCTCGTGGCCGCTCCTCGTTTTCTAAGCCTCAGATTTCTGCTCATACTTGGCAA CTACCATTTGCATGTTTTGGTCTCTTCAGTAACTTTTAGCCCAGGTTTGGCCATTCTGGT GGTAGTTTGGCCATGAAGGGTGAAAGGTCACCTCATGCCTAGGCTACGGCTGCCTGGTCA GCCCGAGGCATGGTCCGAGCTTTCTCTAGCCAGCTCAGGGCAGGGCTGCCCGGTTCCTGC CCTTGCCGCCTGTTCCACTGCCTTTGCCGCCTCCCCACCCACCCCACCTGCTCTGTCCCC ACAGGCAGTAGCACTGTGCAACGAAGTCAAGTGACAGAACACTACATGTTAAATTTTTTT TTAATTTTTCTAAACAACAATGCAATTTTGCTAACGTTATAATTTTGGAAAACTAACTGG CCTCAAGGCCACTTGTGGCCTGTCAAGTGTATCTGGTTCTCGGCTGTCTCGGTGCCACCT GCATGAGAAGTTACCCAGGACTTGGGGTGGGGGAAGGGGTTGGAGAAGCTACTCTCCGGG TCTTCCGGAGCAGAGGGGCCAGGCCAGTCCTGGGTGAGGCCCGGCTCCCTGAATGCGTGT ACAGTAGCCTCTCTTTACTCTTGCCCCCCGAGTTCCCTTTTGCCTTCCTCAGATTTGATG TCCGGGAGGTTTGATTATCCAGAGGAAATGAAATATTTTTATATCAAATTATATAACAAT AAATATTGCCAAATGCTTTCCTCGAGCGTTGTCCAAGTCTAAGTGTTAAATTCAAACAGT TGAAACGTGGATGATGAAATGAGTGTGCCTGTCCTCTCCGGGCCCCTGGGGCTCGCCCCC TCCACCCGGCACGCGGTGTACGCCCAAGGGTGGGCAGCAGCGGACACAACAAAAAAAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCGGTTCGGTGGGTCGGAGATGACGGAGCCGGGCGCCTCTCCCGAGGACCCCTGGGTCA AGGTGGAGTATGCCTACAGCGACAACAGCCTGGACCCCGGGATTTTTGTAGAAAGCACTC GCAAGGGGAGTGTAGTGTCCAGAGCTAATAGCATCGGTTCCACCAGTGCCTCTTCTGTCC CCAACACAGATGACGAGGACAGCGATTACCACCAGGAATCCTACAAGGAGTCCTACAAGG ACCGGCGGCGGCGCGCGCACACTCAGGCCGAGCAGAAGAGGAGGGATGCCATCAAGAGAG GCTATGACGACCTACAGACCATCGTCCCCACCTGCCAGCAGCAGGACTTCTCCATTGGCT CCCAGAAGCTCAGCAAGGCCATCGTTCTGCAGAAGACCATTGACTACATCCAGTTTTTGC ACAAAGAGAAGAAAAAGCAGGAGGAGGAGGTGTCCACGTTGCGCAAGGACGTCATGGCCC TAAAGATCATGAAAGTGAACTATGAGCAGATAGTGAAGGCACACCAGGACAACCCCCATG AGGGGGAGGACCAGGTCTCTGACCAGGTCAAGTTCAACGTGTTTCAAGGCATCATGGACT CCCTCTTCCAGTCCTTCAACGCCTCCATCTCCGTGGCCAGCTTCCAGGAGCTGTCGGCCT GCGTCTTCAGCTGGATTGAGGAGCACTGTAAGCCTCAGACCCTACGGGAGATTGTGATTG GTGTCCTGCACCAACTGAAGAACCAGCTTTACTGACCAGCTCTTGGAACCTGCAGAACAG CCAGCAAGAGGCCTTGACTTTCCTACCTGGCCGTGGAGCCACTGGGCTTGTGAGACTGGA CTGTGACACTGCACAACGGTCAGCTTCTTGGTGTTTGGCTCCCCACCCCTCCCATCTTCA GTGGGGGAGGGTTTATTATGAAAGCTTTAATTTATTATGTTGACCGTATCTCAAACCTGC CTGGTCTCCCCTTCTCCCTGTAGAAGTCCTCAGGATGGGGGGGGTCTGCTCTGGGCACCC CAAAGAGCTCGTGGCCGCTCCTCGTTTTCTAAGCCTCAGATTTCTGCTCATACTTGGCAA CTACCATTTGCATGTTTTGGTCTCTTCAGTAACTTTTAGCCCAGGTTTGGCCATTCTGGT GGTAGTTTGGCCATGAAGGGTGAAAGGTCACCTCATGCCTAGGCTACGGCTGCCTGGTCA GCCCGAGGCATGGTCCGAGCTTTCTCTAGCCAGCTCAGGGCAGGGCTGCCCGGTTCCTGC CCTTGCCGCCTGTTCCACTGCCTTTGCCGCCTCCCCACCCACCCCACCTGCTCTGTCCCC ACAGGCAGTAGCACTGTGCAACGAAGTCAAGTGACAGAACACTACATGTTAAATTTTTTT TTAATTTTTCTAAACAACAATGCAATTTTGCTAACGTTATAATTTTGGAAAACTAACTGG CCTCAAGGCCACTTGTGGCCTGTCAAGTGTATCTGGTTCTCGGCTGTCTCGGTGCCACCT GCATGAGAAGTTACCCAGGACTTGGGGTGGGGGAAGGGGTTGGAGAAGCTACTCTCCGGG TCTTCCGGAGCAGAGGGGCCAGGCCAGTCCTGGGTGAGGCCCGGCTCCCTGAATGCGTGT ACAGTAGCCTCTCTTTACTCTTGCCCCCCGAGTTCCCTTTTGCCTTCCTCAGATTTGATG TCCGGGAGGTTTGATTATCCAGAGGAAATGAAATATTTTTATATCAAATTATATAACAAT AAATATTGCCAAATGCTTTCCTCGAGCGTTGTCCAAGTCTAAGTGTTAAATTCAAACAGT TGAAACGTGGATGATGAAATGAGTGTGCCTGTCCTCTCCGGGCCCCTGGGGCTCGCCCCC TCCACCCGGCACGCGGTGTACGCCCAAGGGTGGGCAGCAGCGGACACAACAAAAAAAGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 536-1286, + strand, RNAz p=0.992481 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 536-1286, + strand, RNAz p=0.992481 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 188-296, gnl|bosTau2|chr19 (38815057-38814949) | |
| 188-296, gnl|canFam2|chr9 (23711687-23711592) | |
| 188-296, gnl|danRer3|chr3 (33053734-33053636) | |
| 188-296, gnl|echTel1|scaffold_270309 (1806-1901) | |
| 188-296, gnl|fr1|chrUn (22743160-22743245) | |
| 188-296, gnl|hg17|chr17 (37974366-37974461) | |
| 188-296, gnl|Hg17|chr17 (37974379-37974487) | |
| 188-296, gnl|loxAfr1|scaffold_23054 (17821-17726) | |
| 188-296, gnl|mm7|chr11 (101197622-101197717) | |
| 188-296, gnl|Mm7|chr11 (101197635-101197743) | |
| 188-296, gnl|monDom2|scaffold_18 (53022669-53022766) | |
| 188-296, gnl|oryCun1|scaffold_176127 (44990-45085) | |
| 188-296, gnl|panTro1|chr19 (41177016-41177111) | |
| 188-296, gnl|rheMac2|chr16 (52690700-52690795) | |
| 188-296, gnl|rn3|chr10 (90119850-90119943) | |
| 188-296, gnl|xenTro1|scaffold_1157 (229633-229541) | |
| 497-698, gnl|bosTau2|chr19 (38813928-38813727) | |
| 497-698, gnl|canFam2|chr9 (23710576-23710356) | |
| 497-698, gnl|canFam2|chr9 (23710564-23710368) | |
| 497-698, gnl|danRer3|chr3 (33047654-33047444) | |
| 497-698, gnl|danRer3|chr3 (33047649-33047446) | |
| 497-698, gnl|dasNov1|scaffold_164141 (39691-39911) | |
| 497-698, gnl|dasNov1|scaffold_164141 (39703-39906) | |
| 497-698, gnl|echTel1|scaffold_270309 (2799-3019) | |
| 497-698, gnl|echTel1|scaffold_270309 (2811-3014) | |
| 497-698, gnl|fr1|chrUn (22744114-22744324) | |
| 497-698, gnl|fr1|chrUn (22744120-22744323) | |
| 497-698, gnl|galGal2|chr27_random (213044-212825) | |
| 497-698, gnl|galGal2|chr27_random (213032-212831) | |
| 497-698, gnl|hg17|chr17 (37975514-37975734) | |
| 497-698, gnl|Hg17|chr17 (37975526-37975727) | |
| 497-698, gnl|hg17|chr2 (224395307-224395509) | |
| 497-698, gnl|loxAfr1|scaffold_23054 (16668-16448) | |
| 497-698, gnl|loxAfr1|scaffold_23054 (16656-16453) | |
| 497-698, gnl|mm7|chr11 (101198695-101198915) | |
| 497-698, gnl|mm7|chr11 (101198707-101198910) | |
| 497-698, gnl|Mm7|chr11 (101198707-101198908) | |
| 497-698, gnl|monDom2|scaffold_18 (53024090-53024333) | |
| 497-698, gnl|monDom2|scaffold_18 (53024104-53024305) | |
| 497-698, gnl|oryCun1|scaffold_176127 (45951-46170) | |
| 497-698, gnl|oryCun1|scaffold_176127 (45963-46166) | |
| 497-698, gnl|panTro1|chr13 (114977552-114977754) | |
| 497-698, gnl|panTro1|chr19 (41178164-41178384) | |
| 497-698, gnl|rheMac2|chr12 (87581350-87581538) | |
| 497-698, gnl|rheMac2|chr16 (52691850-52692070) | |
| 497-698, gnl|rn3|chr10 (90121007-90121227) | |
| 497-698, gnl|rn3|chr10 (90121019-90121222) | |
| 497-698, gnl|tetNig1|chr3 (12384352-12384570) | |
| 497-698, gnl|tetNig1|chr3 (12384366-12384569) | |
| 497-698, gnl|xenTro1|scaffold_1157 (225985-225772) | |
| 497-698, gnl|xenTro1|scaffold_1157 (225980-225777) | |
| 1150-1914, gnl|bosTau2|chr19 (38809943-38809157) | |
| 1150-1914, gnl|Hg17|chr17 (37977634-37978425) | |
| 1150-1914, gnl|Mm7|chr11 (101200656-101201378) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 188-296, gnl|bosTau2|chr19 (38815057-38814949) | |
| 188-296, gnl|canFam2|chr9 (23711687-23711592) | |
| 188-296, gnl|danRer3|chr3 (33053734-33053636) | |
| 188-296, gnl|echTel1|scaffold_270309 (1806-1901) | |
| 188-296, gnl|fr1|chrUn (22743160-22743245) | |
| 188-296, gnl|hg17|chr17 (37974366-37974461) | |
| 188-296, gnl|Hg17|chr17 (37974379-37974487) | |
| 188-296, gnl|loxAfr1|scaffold_23054 (17821-17726) | |
| 188-296, gnl|mm7|chr11 (101197622-101197717) | |
| 188-296, gnl|Mm7|chr11 (101197635-101197743) | |
| 188-296, gnl|monDom2|scaffold_18 (53022669-53022766) | |
| 188-296, gnl|oryCun1|scaffold_176127 (44990-45085) | |
| 188-296, gnl|panTro1|chr19 (41177016-41177111) | |
| 188-296, gnl|rheMac2|chr16 (52690700-52690795) | |
| 188-296, gnl|rn3|chr10 (90119850-90119943) | |
| 188-296, gnl|xenTro1|scaffold_1157 (229633-229541) | |
| 497-698, gnl|bosTau2|chr19 (38813928-38813727) | |
| 497-698, gnl|canFam2|chr9 (23710576-23710356) | |
| 497-698, gnl|canFam2|chr9 (23710564-23710368) | |
| 497-698, gnl|danRer3|chr3 (33047654-33047444) | |
| 497-698, gnl|danRer3|chr3 (33047649-33047446) | |
| 497-698, gnl|dasNov1|scaffold_164141 (39691-39911) | |
| 497-698, gnl|dasNov1|scaffold_164141 (39703-39906) | |
| 497-698, gnl|echTel1|scaffold_270309 (2799-3019) | |
| 497-698, gnl|echTel1|scaffold_270309 (2811-3014) | |
| 497-698, gnl|fr1|chrUn (22744114-22744324) | |
| 497-698, gnl|fr1|chrUn (22744120-22744323) | |
| 497-698, gnl|galGal2|chr27_random (213044-212825) | |
| 497-698, gnl|galGal2|chr27_random (213032-212831) | |
| 497-698, gnl|hg17|chr17 (37975514-37975734) | |
| 497-698, gnl|Hg17|chr17 (37975526-37975727) | |
| 497-698, gnl|hg17|chr2 (224395307-224395509) | |
| 497-698, gnl|loxAfr1|scaffold_23054 (16668-16448) | |
| 497-698, gnl|loxAfr1|scaffold_23054 (16656-16453) | |
| 497-698, gnl|mm7|chr11 (101198695-101198915) | |
| 497-698, gnl|mm7|chr11 (101198707-101198910) | |
| 497-698, gnl|Mm7|chr11 (101198707-101198908) | |
| 497-698, gnl|monDom2|scaffold_18 (53024090-53024333) | |
| 497-698, gnl|monDom2|scaffold_18 (53024104-53024305) | |
| 497-698, gnl|oryCun1|scaffold_176127 (45951-46170) | |
| 497-698, gnl|oryCun1|scaffold_176127 (45963-46166) | |
| 497-698, gnl|panTro1|chr13 (114977552-114977754) | |
| 497-698, gnl|panTro1|chr19 (41178164-41178384) | |
| 497-698, gnl|rheMac2|chr12 (87581350-87581538) | |
| 497-698, gnl|rheMac2|chr16 (52691850-52692070) | |
| 497-698, gnl|rn3|chr10 (90121007-90121227) | |
| 497-698, gnl|rn3|chr10 (90121019-90121222) | |
| 497-698, gnl|tetNig1|chr3 (12384352-12384570) | |
| 497-698, gnl|tetNig1|chr3 (12384366-12384569) | |
| 497-698, gnl|xenTro1|scaffold_1157 (225985-225772) | |
| 497-698, gnl|xenTro1|scaffold_1157 (225980-225777) | |
| 1150-1914, gnl|bosTau2|chr19 (38809943-38809157) | |
| 1150-1914, gnl|Hg17|chr17 (37977634-37978425) | |
| 1150-1914, gnl|Mm7|chr11 (101200656-101201378) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| pla (0.267344) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| jej (0.197844) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| jej (0.197844) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| eje (0.0988338) |