Non-Coding RNA Search

Ss1.1-Pig4-TMW8058H03.3

Sequence:


               
               AATCAGTCTAAGTTCTTCCGGGTCTTAAATGGCTACTCGCTCCAGCACAAACTGTTGTTG
ACTGGGACCCCATTACAAAACAATCTGGAAGAGTTGTTTCACCTGCTCAATTTTCTCACC
CCTGAGAGGTTCCACAATTTGGAAGGCTTCTTGGAGGAGTTTGCTGACATTGCCAAGGAG
GACCAGATTAAAAAACTCCATGACATGCTGGGGCCTCATATGTTGCGGCGGCTCAAAGCG
GATGTGTTCAAGAACATGCCATCCAAGACAGAGCTAATCGTGCGTGTGGAGCTGAGCCCT
ATGCAGAAGAAATACTACAAGTATATCCTCACTCGAAATTTTGAAGCGCTCAATGCTCGA
GGTGGTGGCAACCAGGTCTCTCTGCTCAATGTGGTCATGGATCTTAAGAAGTGCTGCAAC
CACCCGTATCTCTTCCCCGTGGCTGCAATGGAAGCCCCTAAGATGCCTAATGGCATGTAT
GATGGCAGTGCCCTAATTAGAGCATCTGGGAAATTATTGCTGCTACAGAAGATGCTCAAG
AACCTTAAGGAGGGTGGGCACCGTGTGCTCATCTTCTCCCAGATGACCAAGATGCTGGAT
CTGCTGGAGGATTTCTTGGAACATGAAGGTTATAAATACGAACGTATTGATGGCGGAATC
ACTGGGAATATGCGTCAAGAGGCCATCGATCGCTTCAATGCACCGGGTGCTCAGCAGTTC
TGTTTCTTGCTTTCCACTCGAGCTGGAGGCCTTGGAATCAATCTGGCCACTGCTGATACT
GTTATCATCTATGACTCTGACTGGAATCCTCATAATGACATCCAGGCTTTTAGCAGAGCT
CACCGTATTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAGTCTAAGTTCTTCCGGGTCTTAAATGGCTACTCGCTCCAGCACAAACTGTTGTTG
ACTGGGACCCCATTACAAAACAATCTGGAAGAGTTGTTTCACCTGCTCAATTTTCTCACC
CCTGAGAGGTTCCACAATTTGGAAGGCTTCTTGGAGGAGTTTGCTGACATTGCCAAGGAG
GACCAGATTAAAAAACTCCATGACATGCTGGGGCCTCATATGTTGCGGCGGCTCAAAGCG
GATGTGTTCAAGAACATGCCATCCAAGACAGAGCTAATCGTGCGTGTGGAGCTGAGCCCT
ATGCAGAAGAAATACTACAAGTATATCCTCACTCGAAATTTTGAAGCGCTCAATGCTCGA
GGTGGTGGCAACCAGGTCTCTCTGCTCAATGTGGTCATGGATCTTAAGAAGTGCTGCAAC
CACCCGTATCTCTTCCCCGTGGCTGCAATGGAAGCCCCTAAGATGCCTAATGGCATGTAT
GATGGCAGTGCCCTAATTAGAGCATCTGGGAAATTATTGCTGCTACAGAAGATGCTCAAG
AACCTTAAGGAGGGTGGGCACCGTGTGCTCATCTTCTCCCAGATGACCAAGATGCTGGAT
CTGCTGGAGGATTTCTTGGAACATGAAGGTTATAAATACGAACGTATTGATGGCGGAATC
ACTGGGAATATGCGTCAAGAGGCCATCGATCGCTTCAATGCACCGGGTGCTCAGCAGTTC
TGTTTCTTGCTTTCCACTCGAGCTGGAGGCCTTGGAATCAATCTGGCCACTGCTGATACT
GTTATCATCTATGACTCTGACTGGAATCCTCATAATGACATCCAGGCTTTTAGCAGAGCT
CACCGTATTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5NCY8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5NCY8_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               450-568, + strand, RNAz p=0.667081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               450-568, + strand, RNAz p=0.667081

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               450-587, gnl|bosTau2|chr5 (60594480-60594617)
               

               
               450-587, gnl|Hg17|chr12 (6571253-6571101)
               

               
               450-587, gnl|Mm7|chr6 (125135634-125135787)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               450-587, gnl|bosTau2|chr5 (60594480-60594617)
               

               
               450-587, gnl|Hg17|chr12 (6571253-6571101)
               

               
               450-587, gnl|Mm7|chr6 (125135634-125135787)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	450-587, gnl\|bosTau2\|chr5 (60594480-60594617)
	450-587, gnl\|Hg17\|chr12 (6571253-6571101)
	450-587, gnl\|Mm7\|chr6 (125135634-125135787)