Non-Coding RNA Search

Ss1.1-Pig4-TMW8058H05.3

Sequence:


               
               CAAACTGCTCATCCTGCACCAGGCCGTGTCGGTCATCCTGGGCCTGGAGCAGCAGGTGCG
AGAGCGCAACCTGAACCCCAAAGCGGCCTGCTTGAAGCGACGAGAAGAGGAGAAGGTGTC
GGGCGTGGCCGGAGACCCCCAGATGGTGCTGTCAGCTGCCCACCCTGGCCTGGGTGAGGC
CCACAACCCCACCGGGCACATGTGACAGGGACACGGCCCGGTCAAGTGACCTGACCTCAA
TCTAACTGGGACGGTCACGCCAGCACCGGGTCCCCATCTCATGTACACCTGCAGTCAGTG
CCGAGCCAGTGCGGACCTGGGGGCTCTGGTGTTGGGGCTCTAACGGCAGGCCCCACCCCA
GGACTCGGCCACCCTACCACTGGCCTGCACCCAGGCCCAAGGGAGCATTTTTTTTGTTTT
TGATAAACAAAACTGGAAAGAAAAGTAAACAGGAGATATATACACTTTGTCAGAAAAGGA
AAAAAAAATGCCTTAAGTATAAAATGAGGAAGTACTGCTCGCTGGAGGGGCTGCAAGGGA
GCCAGCTGGGTCAGAGCTGCCAGCAAATTGTGCCTACGCCTTGATACTTTTTTTAAGGAG
AGTAAAAGGAACTTTAGTTATGAGATTTTTTTTTTTTTTTTAATGTAGAAGAAAATTAGC
AAAGAAGATGCCTTTGGTCTTTTTTTTGTTTTTTACTTTTTTTGCATATGTTTTGTAAGC
AACAAATTTTTTTTTGTATAAAAGTCTTGTGTCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACTGCTCATCCTGCACCAGGCCGTGTCGGTCATCCTGGGCCTGGAGCAGCAGGTGCG
AGAGCGCAACCTGAACCCCAAAGCGGCCTGCTTGAAGCGACGAGAAGAGGAGAAGGTGTC
GGGCGTGGCCGGAGACCCCCAGATGGTGCTGTCAGCTGCCCACCCTGGCCTGGGTGAGGC
CCACAACCCCACCGGGCACATGTGACAGGGACACGGCCCGGTCAAGTGACCTGACCTCAA
TCTAACTGGGACGGTCACGCCAGCACCGGGTCCCCATCTCATGTACACCTGCAGTCAGTG
CCGAGCCAGTGCGGACCTGGGGGCTCTGGTGTTGGGGCTCTAACGGCAGGCCCCACCCCA
GGACTCGGCCACCCTACCACTGGCCTGCACCCAGGCCCAAGGGAGCATTTTTTTTGTTTT
TGATAAACAAAACTGGAAAGAAAAGTAAACAGGAGATATATACACTTTGTCAGAAAAGGA
AAAAAAAATGCCTTAAGTATAAAATGAGGAAGTACTGCTCGCTGGAGGGGCTGCAAGGGA
GCCAGCTGGGTCAGAGCTGCCAGCAAATTGTGCCTACGCCTTGATACTTTTTTTAAGGAG
AGTAAAAGGAACTTTAGTTATGAGATTTTTTTTTTTTTTTTAATGTAGAAGAAAATTAGC
AAAGAAGATGCCTTTGGTCTTTTTTTTGTTTTTTACTTTTTTTGCATATGTTTTGTAAGC
AACAAATTTTTTTTTGTATAAAAGTCTTGTGTCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               140-247, - strand, RNAz p=0.551389

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-247, - strand, RNAz p=0.551389

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-756, gnl|bosTau2|chr7 (28418534-28419218)
               

               
               61-756, gnl|Hg17|chr19 (1562850-1562042)
               

               
               61-756, gnl|Mm7|chr10 (80199003-80198342)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-756, gnl|bosTau2|chr7 (28418534-28419218)
               

               
               61-756, gnl|Hg17|chr19 (1562850-1562042)
               

               
               61-756, gnl|Mm7|chr10 (80199003-80198342)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cly (0.361925)
               

               
               cut (0.339847)
               

               
               eep (0.245128)
               

               
               cmu (0.186393)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.361925)
               

               
               cut (0.339847)
               

               
               eep (0.245128)
               

               
               cmu (0.186393)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	61-756, gnl\|bosTau2\|chr7 (28418534-28419218)
	61-756, gnl\|Hg17\|chr19 (1562850-1562042)
	61-756, gnl\|Mm7\|chr10 (80199003-80198342)

	cly (0.361925)
	cut (0.339847)
	eep (0.245128)
	cmu (0.186393)
	csp (0.161186)
	eli (0.151814)
	thg (0.126791)
	ebs (0.118301)
	ecc (0.115035)
	ldo (0.0970026)