Ss1.1-Pig4-TMW8058H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTACTTTGCCCAACATTTAAAAAATCCTGGGAGTTC------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------TCAACCCTAGCCTGAGAACCTCCATATGCCACAGTA TAACCCTAAAAAGCAAAAAAAAAAAAAAAAAAAAAATCCTACAGAACCACTAAATCTCAT GTGATCTTCCTCAGGTCATTATTTTAAGTCAAGGAAATACTAGAGAAAAAAAAAAATGAA GATATATTGAGAAAAATGTGTCTAGACCATCCAGAAGTGATATAAGAAATACTGTTTAAA AGTTGATGGAGTTCCTTTGTGGTGCAGTGGGTTAAGGATCTGATGTTATCACTGCAGTGG CTTGGGTCACTGCCATGGCATGGGTTCAGCCCCTGGCCTGGGAACTTCCATATGCCATGG GTGCAGCCAAAAAGAAAGAAAAAAAGGTTGAAAACATCATCTATTGAAGTGAATCTATAT TAAATGTTATTTTAACTGGGGTGTGATTCATATCATTCATATAGATTTAGTCTTCTTAAC TATAATTGTTATATTTTGCTTTTTTAAAAAATATTTGTTATAAGAAAAGTAAGAACAACA ACAAAAAATCCTTCAACTCCTTTTGGCCAGAAAAGTGTAATAGGAAATAAATTGCCATTT TGAATTTGAATGTGTACTTAAGTTTTGGGGTTTTTTTTCCACTGTACAGTATGGGGACCA AGTTACACATACATGTCTGCATAATTTTTCCTCCCATTATTGTGTTGCGATATGTACGAT TTGTTTGGAACTTAAAAAAGTTTTTTTCAGTTTTCAAAGCTCAATAAAAAAGGCTTAGGT TACTAACCTAGTTCAAAATGAAATTATTTAGATACTAATTTTTATAATTTTGAAGAGAGA AATTATATCTTTTTCTAGAATTCTGATGATAAGCATTTGGAGTATATTTATTCCTCCAGA TAATTAATGTATATTCAAGAAATTTCCGTGTTTTTAAGGCATTAGTAGAGGCTTCAACAA TATTAAACACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTACTTTGCCCAACATTTAAAAAATCCTGGGAGTTC------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------TCAACCCTAGCCTGAGAACCTCCATATGCCACAGTA TAACCCTAAAAAGCAAAAAAAAAAAAAAAAAAAAAATCCTACAGAACCACTAAATCTCAT GTGATCTTCCTCAGGTCATTATTTTAAGTCAAGGAAATACTAGAGAAAAAAAAAAATGAA GATATATTGAGAAAAATGTGTCTAGACCATCCAGAAGTGATATAAGAAATACTGTTTAAA AGTTGATGGAGTTCCTTTGTGGTGCAGTGGGTTAAGGATCTGATGTTATCACTGCAGTGG CTTGGGTCACTGCCATGGCATGGGTTCAGCCCCTGGCCTGGGAACTTCCATATGCCATGG GTGCAGCCAAAAAGAAAGAAAAAAAGGTTGAAAACATCATCTATTGAAGTGAATCTATAT TAAATGTTATTTTAACTGGGGTGTGATTCATATCATTCATATAGATTTAGTCTTCTTAAC TATAATTGTTATATTTTGCTTTTTTAAAAAATATTTGTTATAAGAAAAGTAAGAACAACA ACAAAAAATCCTTCAACTCCTTTTGGCCAGAAAAGTGTAATAGGAAATAAATTGCCATTT TGAATTTGAATGTGTACTTAAGTTTTGGGGTTTTTTTTCCACTGTACAGTATGGGGACCA AGTTACACATACATGTCTGCATAATTTTTCCTCCCATTATTGTGTTGCGATATGTACGAT TTGTTTGGAACTTAAAAAAGTTTTTTTCAGTTTTCAAAGCTCAATAAAAAAGGCTTAGGT TACTAACCTAGTTCAAAATGAAATTATTTAGATACTAATTTTTATAATTTTGAAGAGAGA AATTATATCTTTTTCTAGAATTCTGATGATAAGCATTTGGAGTATATTTATTCCTCCAGA TAATTAATGTATATTCAAGAAATTTCCGTGTTTTTAAGGCATTAGTAGAGGCTTCAACAA TATTAAACACAA |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 104-257, gnl|bosTau2|chr13 (30823209-30823370) | |
| 104-257, gnl|canFam2|chr27 (19120868-19120976) | |
| 104-257, gnl|canFam2|chr27 (19121119-19120868) | |
| 104-257, gnl|dasNov1|scaffold_178516 (3370-3271) | |
| 104-257, gnl|dasNov1|scaffold_178516 (3131-3370) | |
| 104-257, gnl|echTel1|scaffold_306509 (4768-4501) | |
| 104-257, gnl|echTel1|scaffold_325325 (14256-14155) | |
| 104-257, gnl|hg17|chr12 (6460960-6461067) | |
| 104-257, gnl|hg17|chr12 (32835337-32835596) | |
| 104-257, gnl|Hg17|chr12 (32835591-32835428) | |
| 104-257, gnl|loxAfr1|scaffold_3474 (47800-47703) | |
| 104-257, gnl|loxAfr1|scaffold_3474 (47562-47800) | |
| 104-257, gnl|mm7|chr16 (15816491-15816579) | |
| 104-257, gnl|mm7|chr16 (15816689-15816493) | |
| 104-257, gnl|monDom2|scaffold_130 (1399413-1399318) | |
| 104-257, gnl|monDom2|scaffold_130 (1399197-1399411) | |
| 104-257, gnl|oryCun1|scaffold_194827 (38160-38261) | |
| 104-257, gnl|oryCun1|scaffold_194827 (38380-38160) | |
| 104-257, gnl|panTro1|chr10 (6995183-6995290) | |
| 104-257, gnl|panTro1|chrUn_random (34216241-34215983) | |
| 104-257, gnl|rheMac2|chr11 (32890395-32890290) | |
| 104-257, gnl|rheMac2|chr11 (32890140-32890395) | |
| 104-257, gnl|rn3|chr11 (86625427-86625519) | |
| 104-257, gnl|rn3|chr11 (86625627-86625427) | |
| 104-257, gnl|xenTro1|scaffold_1807 (58517-58626) | |
| 395-638, gnl|bosTau2|chr13 (30823363-30823606) | |
| 395-638, gnl|Hg17|chr12 (32835434-32835208) | |
| 395-638, gnl|Mm7|chr16 (15816598-15816834) | |
| 736-984, gnl|bosTau2|chr13 (30823614-30823853) | |
| 736-984, gnl|Hg17|chr12 (32835200-32834958) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 104-257, gnl|bosTau2|chr13 (30823209-30823370) | |
| 104-257, gnl|canFam2|chr27 (19120868-19120976) | |
| 104-257, gnl|canFam2|chr27 (19121119-19120868) | |
| 104-257, gnl|dasNov1|scaffold_178516 (3370-3271) | |
| 104-257, gnl|dasNov1|scaffold_178516 (3131-3370) | |
| 104-257, gnl|echTel1|scaffold_306509 (4768-4501) | |
| 104-257, gnl|echTel1|scaffold_325325 (14256-14155) | |
| 104-257, gnl|hg17|chr12 (6460960-6461067) | |
| 104-257, gnl|hg17|chr12 (32835337-32835596) | |
| 104-257, gnl|Hg17|chr12 (32835591-32835428) | |
| 104-257, gnl|loxAfr1|scaffold_3474 (47800-47703) | |
| 104-257, gnl|loxAfr1|scaffold_3474 (47562-47800) | |
| 104-257, gnl|mm7|chr16 (15816491-15816579) | |
| 104-257, gnl|mm7|chr16 (15816689-15816493) | |
| 104-257, gnl|monDom2|scaffold_130 (1399413-1399318) | |
| 104-257, gnl|monDom2|scaffold_130 (1399197-1399411) | |
| 104-257, gnl|oryCun1|scaffold_194827 (38160-38261) | |
| 104-257, gnl|oryCun1|scaffold_194827 (38380-38160) | |
| 104-257, gnl|panTro1|chr10 (6995183-6995290) | |
| 104-257, gnl|panTro1|chrUn_random (34216241-34215983) | |
| 104-257, gnl|rheMac2|chr11 (32890395-32890290) | |
| 104-257, gnl|rheMac2|chr11 (32890140-32890395) | |
| 104-257, gnl|rn3|chr11 (86625427-86625519) | |
| 104-257, gnl|rn3|chr11 (86625627-86625427) | |
| 104-257, gnl|xenTro1|scaffold_1807 (58517-58626) | |
| 395-638, gnl|bosTau2|chr13 (30823363-30823606) | |
| 395-638, gnl|Hg17|chr12 (32835434-32835208) | |
| 395-638, gnl|Mm7|chr16 (15816598-15816834) | |
| 736-984, gnl|bosTau2|chr13 (30823614-30823853) | |
| 736-984, gnl|Hg17|chr12 (32835200-32834958) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) |