Non-Coding RNA Search

Ss1.1-Pig4-TMW8058H12.3

Sequence:


               
               GTGTGATGTTTTCAGGCCACCAGAATCAAAGAAAAGGAATGAAGTGGTGCATGAATTGAG
CTTTTCTACTGGATGAAGTGTCAGTATGAGTAATAGCGTCAAGTCCTTTTCTTGGCCAGT
GTAAGGCCTTTCCCATCTTGCATGAAGGCTGTCTCCTTGTCTACTGTTTCTCTTAAATGA
ACTGGTTGAAATTTGGAATATGGGCAAATAGGTGATGGAGAGGGGGTGATGATTTTCCTG
GATTTTCTTCTGGCCCCAGAGATGCAGCCCTGATAGTCAAACTTAAGAGGGAATTCTCAC
ATTCACCCCTCTGACAGACATTTACTAGAGGAAGAGCACTGGGTAAGTATATTTGGACAC
ATTTACTAATCTTAGAAATTTTCTAAAAGGCCTGTTGTCTTGACCCATTACTCTGTTGTC
CCTGGCGTATTAGCTGAGGTTCAAGGTTCCCGGAAGCAGAACTGTCAAGGGATTTCCTTT
GTAACTGCCCTCTCTGTACACAGCAGGCATTCATAAATGTTGAGAGATAGACACGTCACA
GACAGACAAGATAGAAAAGGGGAGACATACAAATGTTTGTGCAGACTGATGGCTAAGATG
AGTCCAGATTACAGGGCCTCCCCTACCCCTCGAATGGTATTTAGGTCAAGTTTAGCTTTT
AGAGTCCAGGTCTGGTTAATTGCCAGGGTGACAAAGAATCGCATGCACCGATATAAACAG
GAGTCAAAATGCATTATTAGCTGAAGATCGAATCACCCATTGTGGAGATGAAATAGCTGT
GATGAAGCTGCATATTTTATGCCAGGAAGTGACTTCAGTGGATGGCTAGGAAAAAGTTGT
TTGCCGTAATGTCACATCTCTCATCTGCTTGGAATATGGAACTATATTCTAAAATATCTG
CCATTGGGGTCTTGTTCACTACAAGATAAGTTCAGACTTCATAGAATTTTGCAGCAATTC
ACAACTTGATTGTATCTGCAAGCTGTCTTCACAGATGTCAAATAAAGCAAAACTCTGGAT
CTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGATGTTTTCAGGCCACCAGAATCAAAGAAAAGGAATGAAGTGGTGCATGAATTGAG
CTTTTCTACTGGATGAAGTGTCAGTATGAGTAATAGCGTCAAGTCCTTTTCTTGGCCAGT
GTAAGGCCTTTCCCATCTTGCATGAAGGCTGTCTCCTTGTCTACTGTTTCTCTTAAATGA
ACTGGTTGAAATTTGGAATATGGGCAAATAGGTGATGGAGAGGGGGTGATGATTTTCCTG
GATTTTCTTCTGGCCCCAGAGATGCAGCCCTGATAGTCAAACTTAAGAGGGAATTCTCAC
ATTCACCCCTCTGACAGACATTTACTAGAGGAAGAGCACTGGGTAAGTATATTTGGACAC
ATTTACTAATCTTAGAAATTTTCTAAAAGGCCTGTTGTCTTGACCCATTACTCTGTTGTC
CCTGGCGTATTAGCTGAGGTTCAAGGTTCCCGGAAGCAGAACTGTCAAGGGATTTCCTTT
GTAACTGCCCTCTCTGTACACAGCAGGCATTCATAAATGTTGAGAGATAGACACGTCACA
GACAGACAAGATAGAAAAGGGGAGACATACAAATGTTTGTGCAGACTGATGGCTAAGATG
AGTCCAGATTACAGGGCCTCCCCTACCCCTCGAATGGTATTTAGGTCAAGTTTAGCTTTT
AGAGTCCAGGTCTGGTTAATTGCCAGGGTGACAAAGAATCGCATGCACCGATATAAACAG
GAGTCAAAATGCATTATTAGCTGAAGATCGAATCACCCATTGTGGAGATGAAATAGCTGT
GATGAAGCTGCATATTTTATGCCAGGAAGTGACTTCAGTGGATGGCTAGGAAAAAGTTGT
TTGCCGTAATGTCACATCTCTCATCTGCTTGGAATATGGAACTATATTCTAAAATATCTG
CCATTGGGGTCTTGTTCACTACAAGATAAGTTCAGACTTCATAGAATTTTGCAGCAATTC
ACAACTTGATTGTATCTGCAAGCTGTCTTCACAGATGTCAAATAAAGCAAAACTCTGGAT
CTCAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1024, gnl|bosTau2|chr26 (23905483-23904472)
               

               
               3-1024, gnl|Hg17|chr10 (118421722-118420693)
               

               
               3-1024, gnl|Mm7|chr19 (58718928-58717968)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1024, gnl|bosTau2|chr26 (23905483-23904472)
               

               
               3-1024, gnl|Hg17|chr10 (118421722-118420693)
               

               
               3-1024, gnl|Mm7|chr19 (58718928-58717968)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               fcc (0.39557)
               

               
               spc (0.340097)
               

               
               kid (0.259471)
               

               
               cbr (0.255951)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ret (0.128733)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               spc (0.340097)
               

               
               kid (0.259471)
               

               
               cbr (0.255951)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ret (0.128733)

	3-1024, gnl\|bosTau2\|chr26 (23905483-23904472)
	3-1024, gnl\|Hg17\|chr10 (118421722-118420693)
	3-1024, gnl\|Mm7\|chr19 (58718928-58717968)

	fcc (0.39557)
	spc (0.340097)
	kid (0.259471)
	cbr (0.255951)
	fhi (0.169578)
	nco (0.161734)
	fco (0.157208)
	ret (0.128733)