Non-Coding RNA Search

Ss1.1-Pig4-TMW8058H13.3

Sequence:


               
               CAAACTGAGCGGGCTCTGGAGCCGGATTTCCCACCTGGTGCTGCCCGTCCAGCCCGTGAG
GAGCATCGAAGAACACGGCTGCTTTCTCTAAGCCACGCACAGAGCTGCTTGTGGGAGGCG
TGGGGTTATTAAAAAAGGCAGTTGAAAAGGCTTCTGTTTACGTGGAAGGAGGTTGCTGAA
TGCGAGGAAATAGCCTGGAAGGCACAAATGAGCTGATTTTCGAAATTGGCATTTTTTTTT
TTTTTTAACGTTTTGTACAATCCTTCTGATCTACGCTTGACAAAGCTAAAAGTTGATCTG
ACCTTTTTCCCTTGCCTTTCGAGCACATCAGGAATGTAAAACTGAGAAGTATTTTCTTAA
TCCAAAAATAGGGCAACAGAATCCATGCATGGGCAGATGATCGTCCCCGAATACCTACAG
GGGATTTTTGTTTTCTTGAGAGTCTGAGGAGCCCTTTGGATCGTATTTGGGCTCGCAGTA
AAGCAATTAGTTACAAAGCAGTGAAATTTTAAAAAAAAAATTTCTATCACATGTTAAATA
TTTTTAAAACTGATTTTAATAACCTAGGTGTGGGATTATAGCACACACATCTTTGCACTT
TTGAATAGTATGAAAAAGGAAATAAGCATCCACACATTTATTTACCGAAGTACTATGTGT
GAGGCACTAGCTCTGTTTTTCTCCCGTCAAATGAGCGCCGAGGTAAAAGCAGCTGAACTC
GAGAAACGTTCTTAGAAATTGGAAACAGTAGTCACTGCAAATGAAGAAATTCCAGTTGGC
TGTATCTCTGCTTCAGCTTTCTTGAATGATTGAGAGCAGTGATTTTCCATCTGTTTGCAG
ACACCCCTCCCTTCTGGATCAAAGCAGTTCTGCTTTTGCCCCTTTTCTATATTGAGACCC
TCCCTAAGATTTAATTGGAATAAAGAGTTCCACTGATGAAGCTCAAAAATCATTGATTAA
GTGAAAAAACATCTTAGAACATAGGAAATGGTTAAAAAAATGAATATATTAAAACTCGTG
AGTAGGAAGAGAATGAAATACAGGTTTATCTTAGAAACCGGTTTATCTTAGAAACGTGCA
GTTTTTGAAAGATCAAGACCTACAGATGAAAAGCGAGAATGAATAAACTAATATTTACTA
GCATATTTCTATGCTTTTTAAAGTTTGTTTCTGTTTCCCTCGAATGAAATTTTATAATTG
TGTAAGATGGGAGTTTCAGTGCCCTTTAAGCAGAACAGATTTTAATAACCAATTGATGGA
GTTCCTTGGTGGTCTAGGGGTTAGGATTTTATGCTTTCACCACTGTGGCCTGGGTTCAGT
CCCTAGTCTGGGAACTGAGATCCCACATCAAGCCACTGCGCTGCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACTGAGCGGGCTCTGGAGCCGGATTTCCCACCTGGTGCTGCCCGTCCAGCCCGTGAG
GAGCATCGAAGAACACGGCTGCTTTCTCTAAGCCACGCACAGAGCTGCTTGTGGGAGGCG
TGGGGTTATTAAAAAAGGCAGTTGAAAAGGCTTCTGTTTACGTGGAAGGAGGTTGCTGAA
TGCGAGGAAATAGCCTGGAAGGCACAAATGAGCTGATTTTCGAAATTGGCATTTTTTTTT
TTTTTTAACGTTTTGTACAATCCTTCTGATCTACGCTTGACAAAGCTAAAAGTTGATCTG
ACCTTTTTCCCTTGCCTTTCGAGCACATCAGGAATGTAAAACTGAGAAGTATTTTCTTAA
TCCAAAAATAGGGCAACAGAATCCATGCATGGGCAGATGATCGTCCCCGAATACCTACAG
GGGATTTTTGTTTTCTTGAGAGTCTGAGGAGCCCTTTGGATCGTATTTGGGCTCGCAGTA
AAGCAATTAGTTACAAAGCAGTGAAATTTTAAAAAAAAAATTTCTATCACATGTTAAATA
TTTTTAAAACTGATTTTAATAACCTAGGTGTGGGATTATAGCACACACATCTTTGCACTT
TTGAATAGTATGAAAAAGGAAATAAGCATCCACACATTTATTTACCGAAGTACTATGTGT
GAGGCACTAGCTCTGTTTTTCTCCCGTCAAATGAGCGCCGAGGTAAAAGCAGCTGAACTC
GAGAAACGTTCTTAGAAATTGGAAACAGTAGTCACTGCAAATGAAGAAATTCCAGTTGGC
TGTATCTCTGCTTCAGCTTTCTTGAATGATTGAGAGCAGTGATTTTCCATCTGTTTGCAG
ACACCCCTCCCTTCTGGATCAAAGCAGTTCTGCTTTTGCCCCTTTTCTATATTGAGACCC
TCCCTAAGATTTAATTGGAATAAAGAGTTCCACTGATGAAGCTCAAAAATCATTGATTAA
GTGAAAAAACATCTTAGAACATAGGAAATGGTTAAAAAAATGAATATATTAAAACTCGTG
AGTAGGAAGAGAATGAAATACAGGTTTATCTTAGAAACCGGTTTATCTTAGAAACGTGCA
GTTTTTGAAAGATCAAGACCTACAGATGAAAAGCGAGAATGAATAAACTAATATTTACTA
GCATATTTCTATGCTTTTTAAAGTTTGTTTCTGTTTCCCTCGAATGAAATTTTATAATTG
TGTAAGATGGGAGTTTCAGTGCCCTTTAAGCAGAACAGATTTTAATAACCAATTGATGGA
GTTCCTTGGTGGTCTAGGGGTTAGGATTTTATGCTTTCACCACTGTGGCCTGGGTTCAGT
CCCTAGTCTGGGAACTGAGATCCCACATCAAGCCACTGCGCTGCACCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               18-1256, gnl|bosTau2|chr16 (45739656-45738437)
               

               
               18-1256, gnl|Hg17|chr1 (176546936-176545679)
               

               
               18-1256, gnl|Mm7|chr1 (156027275-156028541)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-1256, gnl|bosTau2|chr16 (45739656-45738437)
               

               
               18-1256, gnl|Hg17|chr1 (176546936-176545679)
               

               
               18-1256, gnl|Mm7|chr1 (156027275-156028541)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               spl (0.286369)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	18-1256, gnl\|bosTau2\|chr16 (45739656-45738437)
	18-1256, gnl\|Hg17\|chr1 (176546936-176545679)
	18-1256, gnl\|Mm7\|chr1 (156027275-156028541)

	spl (0.286369)
	cmu (0.186393)
	sin (0.174948)
	lun (0.150489)
	ste (0.135208)
	pgl (0.118483)
	med (0.116252)