Ss1.1-Pig4-TMW8058I02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTCACTTTCCGCAACCCTGTCATTGAGCGAATACCCCGGCTCCGACGGCAGAAGAAGA TCTTCTCCAAGCAGCAAGGGAAGGCCTTTCAGCGTGCTAGGCAGATGAACATCGACGTCG CCACCTGGGTGCGGCTGCTTCGCAGGCTCATCCCCAACCCCTCGGCCATAGGCACCTTCA GCCCGGGGGCTTCCCCAGGACCTGAGGCTCGGTCCACAGGTGACATATCTGTGGAGAAGC TGAACCTCGGGACTGACTTGGACGGCTCGCCCCAGAAGAGCCCTCTGGGTCCTCCTTCCA GCCCATCAAGTCTGAGTTCCCCAATCCAGGAAACTTCCACCACTCCCCAGCTGCCTTCGG AGACCCAGGAGACCCCAGGCCCCACTCTGTGCAGCCCTCTGAGGAAGTCACCCCTGACCC TCGAGGATTTCAAGTTCCTGGCAGTGCTGGGCCGGGGTCACTTTGGGAAGGTGCTGCTCT CCGAATTCCGGCCCAGCGGGGAGCTGTTTGCCATCAAGGCTTTGAAGAAAGGGGACATTG TGGCCCGAGACGAGGTGGAGAGCCTGATGTGTGAGAAGCGGATCTTGGCAGCTGTGACCA GTGCAGGACACCCCTTTCTGGTGAACCTGTTTGGCTGTTTCCAGACACCAGAGCACGTGT GCTTCGTGATGGAGTACTCGGCCGGTGGGGACCTGATGCTGCACATCCACAGCGATGTGT TCTCTGAGCCCCGAGCTGTCTTTTATTCAGCCTGTGTGGTGCTGGGACTGCAGTTTCTGC ATGAACACAAGATTGTCTACAGGGACCTGAAGTTGGACAATTTGCTCTTGGACACCGAGG GCTATGTCAAGATCGCAGACTTTGGCCTCTGCAAGGAGGGGATGGGCTATGGGGACCGGA CCAGCACGTTCTGTGGGACCCCGGAGTTCCTGGCACCTGAGGTGCTGACAGACACATCGT ACACTCGAGCAGTGGACTGGTGGGGGCTGGGCGTGCTGCTCTATGAGATGCTGGTTGGCG AGTCCCCATTCCCAGGGGATGATGAGGAGGAGGTATTTGACAGCATTGTCAACGATGAGG TTCGCTATCCCCGCTTCCTGTCAGCTGAAGCCATCAGCATCATGCGCAGGCTGCTGCGGA GGAATCCAGAGCGGAGGTTGGGGTCCAGCGAGAGGGATGCAGAAGATGTGAAAAAACAGC CTTTCTTCAGGACGCTGGGCTGGGACGCCCTGCTGGCTCGGCGCCTCCCGCCGCCTTTTG TACCCACGCTGTCTGGCCGCACTGATGTCAGCAACTTCGACGAGGAATTCACGGGGGAGT CCCCCACACTGAGCCCACCCCGAGACGCACGGCCCCTCACAGCCACAGAGCAGGCAGCCT TCCGGGACTTCGACTTCGTGGCCGGGAGCTGCTAGTCCCCTGCCCCGTCCCTGCACTCAC CCAGCTGTTCGTAGTTTTTAAAAAGGCCTTTGGGTTTTGCCCCATCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTCACTTTCCGCAACCCTGTCATTGAGCGAATACCCCGGCTCCGACGGCAGAAGAAGA TCTTCTCCAAGCAGCAAGGGAAGGCCTTTCAGCGTGCTAGGCAGATGAACATCGACGTCG CCACCTGGGTGCGGCTGCTTCGCAGGCTCATCCCCAACCCCTCGGCCATAGGCACCTTCA GCCCGGGGGCTTCCCCAGGACCTGAGGCTCGGTCCACAGGTGACATATCTGTGGAGAAGC TGAACCTCGGGACTGACTTGGACGGCTCGCCCCAGAAGAGCCCTCTGGGTCCTCCTTCCA GCCCATCAAGTCTGAGTTCCCCAATCCAGGAAACTTCCACCACTCCCCAGCTGCCTTCGG AGACCCAGGAGACCCCAGGCCCCACTCTGTGCAGCCCTCTGAGGAAGTCACCCCTGACCC TCGAGGATTTCAAGTTCCTGGCAGTGCTGGGCCGGGGTCACTTTGGGAAGGTGCTGCTCT CCGAATTCCGGCCCAGCGGGGAGCTGTTTGCCATCAAGGCTTTGAAGAAAGGGGACATTG TGGCCCGAGACGAGGTGGAGAGCCTGATGTGTGAGAAGCGGATCTTGGCAGCTGTGACCA GTGCAGGACACCCCTTTCTGGTGAACCTGTTTGGCTGTTTCCAGACACCAGAGCACGTGT GCTTCGTGATGGAGTACTCGGCCGGTGGGGACCTGATGCTGCACATCCACAGCGATGTGT TCTCTGAGCCCCGAGCTGTCTTTTATTCAGCCTGTGTGGTGCTGGGACTGCAGTTTCTGC ATGAACACAAGATTGTCTACAGGGACCTGAAGTTGGACAATTTGCTCTTGGACACCGAGG GCTATGTCAAGATCGCAGACTTTGGCCTCTGCAAGGAGGGGATGGGCTATGGGGACCGGA CCAGCACGTTCTGTGGGACCCCGGAGTTCCTGGCACCTGAGGTGCTGACAGACACATCGT ACACTCGAGCAGTGGACTGGTGGGGGCTGGGCGTGCTGCTCTATGAGATGCTGGTTGGCG AGTCCCCATTCCCAGGGGATGATGAGGAGGAGGTATTTGACAGCATTGTCAACGATGAGG TTCGCTATCCCCGCTTCCTGTCAGCTGAAGCCATCAGCATCATGCGCAGGCTGCTGCGGA GGAATCCAGAGCGGAGGTTGGGGTCCAGCGAGAGGGATGCAGAAGATGTGAAAAAACAGC CTTTCTTCAGGACGCTGGGCTGGGACGCCCTGCTGGCTCGGCGCCTCCCGCCGCCTTTTG TACCCACGCTGTCTGGCCGCACTGATGTCAGCAACTTCGACGAGGAATTCACGGGGGAGT CCCCCACACTGAGCCCACCCCGAGACGCACGGCCCCTCACAGCCACAGAGCAGGCAGCCT TCCGGGACTTCGACTTCGTGGCCGGGAGCTGCTAGTCCCCTGCCCCGTCCCTGCACTCAC CCAGCTGTTCGTAGTTTTTAAAAAGGCCTTTGGGTTTTGCCCCATCGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 77-220, gnl|bosTau2|chr7 (7405304-7405161) | |
| 77-220, gnl|canFam2|chr20 (51168956-51168839) | |
| 77-220, gnl|danRer3|chr1 (45299373-45299487) | |
| 77-220, gnl|dasNov1|scaffold_11628 (2903-2782) | |
| 77-220, gnl|echTel1|scaffold_197581 (2013-2131) | |
| 77-220, gnl|fr1|chrUn (45816946-45817057) | |
| 77-220, gnl|galGal2|chr8 (15520444-15520327) | |
| 77-220, gnl|hg17|chr19 (14435635-14435752) | |
| 77-220, gnl|Hg17|chr19 (14435638-14435781) | |
| 77-220, gnl|loxAfr1|scaffold_143152 (399-282) | |
| 77-220, gnl|mm7|chr8 (82256281-82256164) | |
| 77-220, gnl|Mm7|chr8 (82256276-82256133) | |
| 77-220, gnl|monDom2|scaffold_85 (5952964-5953081) | |
| 77-220, gnl|oryCun1|scaffold_211825 (29947-29830) | |
| 77-220, gnl|panTro1|chr20 (15076462-15076579) | |
| 77-220, gnl|rheMac2|chr19 (14173218-14173335) | |
| 77-220, gnl|rn3|chr19 (26157798-26157915) | |
| 77-220, gnl|tetNig1|chr18 (1339984-1340098) | |
| 77-220, gnl|xenTro1|scaffold_82 (220287-220177) | |
| 561-732, gnl|bosTau2|chr11 (78512557-78512728) | |
| 561-732, gnl|Hg17|chr9 (128558578-128558749) | |
| 561-732, gnl|Mm7|chr2 (30094334-30094505) | |
| 879-1022, gnl|bosTau2|chr11 (78514481-78514624) | |
| 879-1022, gnl|Hg17|chr9 (128561518-128561661) | |
| 879-1022, gnl|Mm7|chr2 (30097149-30097292) | |
| 1211-1486, gnl|bosTau2|chr7 (7399488-7399213) | |
| 1211-1486, gnl|canFam2|chr20 (51162347-51162120) | |
| 1211-1486, gnl|danRer3|chr1 (45306326-45306554) | |
| 1211-1486, gnl|dasNov1|scaffold_136999 (3499-3261) | |
| 1211-1486, gnl|fr1|chrUn (45819064-45819291) | |
| 1211-1486, gnl|galGal2|chr8 (15513379-15513172) | |
| 1211-1486, gnl|hg17|chr19 (14443370-14443597) | |
| 1211-1486, gnl|Hg17|chr19 (14443392-14443673) | |
| 1211-1486, gnl|mm7|chr8 (82248816-82248593) | |
| 1211-1486, gnl|Mm7|chr8 (82248796-82248523) | |
| 1211-1486, gnl|monDom2|scaffold_85 (5957538-5957764) | |
| 1211-1486, gnl|oryCun1|scaffold_150088 (980-756) | |
| 1211-1486, gnl|panTro1|chr20 (15084184-15084411) | |
| 1211-1486, gnl|rheMac2|chr19 (14180773-14181000) | |
| 1211-1486, gnl|rn3|chr19 (26165004-26165226) | |
| 1211-1486, gnl|tetNig1|chr18 (1343433-1343658) | |
| 1211-1486, gnl|xenTro1|scaffold_115 (529806-529596) | |
| 1220-1422, gnl|bosTau2|chr11 (78515147-78515350) | |
| 1220-1422, gnl|canFam2|chr9 (58225150-58224885) | |
| 1220-1422, gnl|danRer3|chr5 (25784884-25784664) | |
| 1220-1422, gnl|dasNov1|scaffold_136999 (3531-3270) | |
| 1220-1422, gnl|fr1|chrUn (200516512-200516770) | |
| 1220-1422, gnl|hg17|chr9 (128562176-128562441) | |
| 1220-1422, gnl|Hg17|chr9 (128562235-128562438) | |
| 1220-1422, gnl|mm7|chr2 (30097785-30098048) | |
| 1220-1422, gnl|Mm7|chr2 (30097842-30098045) | |
| 1220-1422, gnl|monDom2|scaffold_51 (3296061-3296362) | |
| 1220-1422, gnl|oryCun1|scaffold_150088 (1017-749) | |
| 1220-1422, gnl|panTro1|chr11 (113400821-113401086) | |
| 1220-1422, gnl|rheMac2|chr15 (10140887-10140622) | |
| 1220-1422, gnl|rn3|chr3 (9096153-9096416) | |
| 1220-1422, gnl|tetNig1|chr15 (3577042-3577271) | |
| 1220-1422, gnl|xenTro1|scaffold_82 (215332-215075) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-220, gnl|bosTau2|chr7 (7405304-7405161) | |
| 77-220, gnl|canFam2|chr20 (51168956-51168839) | |
| 77-220, gnl|danRer3|chr1 (45299373-45299487) | |
| 77-220, gnl|dasNov1|scaffold_11628 (2903-2782) | |
| 77-220, gnl|echTel1|scaffold_197581 (2013-2131) | |
| 77-220, gnl|fr1|chrUn (45816946-45817057) | |
| 77-220, gnl|galGal2|chr8 (15520444-15520327) | |
| 77-220, gnl|hg17|chr19 (14435635-14435752) | |
| 77-220, gnl|Hg17|chr19 (14435638-14435781) | |
| 77-220, gnl|loxAfr1|scaffold_143152 (399-282) | |
| 77-220, gnl|mm7|chr8 (82256281-82256164) | |
| 77-220, gnl|Mm7|chr8 (82256276-82256133) | |
| 77-220, gnl|monDom2|scaffold_85 (5952964-5953081) | |
| 77-220, gnl|oryCun1|scaffold_211825 (29947-29830) | |
| 77-220, gnl|panTro1|chr20 (15076462-15076579) | |
| 77-220, gnl|rheMac2|chr19 (14173218-14173335) | |
| 77-220, gnl|rn3|chr19 (26157798-26157915) | |
| 77-220, gnl|tetNig1|chr18 (1339984-1340098) | |
| 77-220, gnl|xenTro1|scaffold_82 (220287-220177) | |
| 561-732, gnl|bosTau2|chr11 (78512557-78512728) | |
| 561-732, gnl|Hg17|chr9 (128558578-128558749) | |
| 561-732, gnl|Mm7|chr2 (30094334-30094505) | |
| 879-1022, gnl|bosTau2|chr11 (78514481-78514624) | |
| 879-1022, gnl|Hg17|chr9 (128561518-128561661) | |
| 879-1022, gnl|Mm7|chr2 (30097149-30097292) | |
| 1211-1486, gnl|bosTau2|chr7 (7399488-7399213) | |
| 1211-1486, gnl|canFam2|chr20 (51162347-51162120) | |
| 1211-1486, gnl|danRer3|chr1 (45306326-45306554) | |
| 1211-1486, gnl|dasNov1|scaffold_136999 (3499-3261) | |
| 1211-1486, gnl|fr1|chrUn (45819064-45819291) | |
| 1211-1486, gnl|galGal2|chr8 (15513379-15513172) | |
| 1211-1486, gnl|hg17|chr19 (14443370-14443597) | |
| 1211-1486, gnl|Hg17|chr19 (14443392-14443673) | |
| 1211-1486, gnl|mm7|chr8 (82248816-82248593) | |
| 1211-1486, gnl|Mm7|chr8 (82248796-82248523) | |
| 1211-1486, gnl|monDom2|scaffold_85 (5957538-5957764) | |
| 1211-1486, gnl|oryCun1|scaffold_150088 (980-756) | |
| 1211-1486, gnl|panTro1|chr20 (15084184-15084411) | |
| 1211-1486, gnl|rheMac2|chr19 (14180773-14181000) | |
| 1211-1486, gnl|rn3|chr19 (26165004-26165226) | |
| 1211-1486, gnl|tetNig1|chr18 (1343433-1343658) | |
| 1211-1486, gnl|xenTro1|scaffold_115 (529806-529596) | |
| 1220-1422, gnl|bosTau2|chr11 (78515147-78515350) | |
| 1220-1422, gnl|canFam2|chr9 (58225150-58224885) | |
| 1220-1422, gnl|danRer3|chr5 (25784884-25784664) | |
| 1220-1422, gnl|dasNov1|scaffold_136999 (3531-3270) | |
| 1220-1422, gnl|fr1|chrUn (200516512-200516770) | |
| 1220-1422, gnl|hg17|chr9 (128562176-128562441) | |
| 1220-1422, gnl|Hg17|chr9 (128562235-128562438) | |
| 1220-1422, gnl|mm7|chr2 (30097785-30098048) | |
| 1220-1422, gnl|Mm7|chr2 (30097842-30098045) | |
| 1220-1422, gnl|monDom2|scaffold_51 (3296061-3296362) | |
| 1220-1422, gnl|oryCun1|scaffold_150088 (1017-749) | |
| 1220-1422, gnl|panTro1|chr11 (113400821-113401086) | |
| 1220-1422, gnl|rheMac2|chr15 (10140887-10140622) | |
| 1220-1422, gnl|rn3|chr3 (9096153-9096416) | |
| 1220-1422, gnl|tetNig1|chr15 (3577042-3577271) | |
| 1220-1422, gnl|xenTro1|scaffold_82 (215332-215075) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| elu (0.385356) | |
| ese (0.379507) | |
| cly (0.361925) | |
| cag (0.302389) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| jej (0.197844) | |
| col (0.195008) | |
| nje (0.16592) | |
| pty (0.142714) | |
| pla (0.133672) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| elu (0.385356) | |
| ese (0.379507) | |
| cly (0.361925) | |
| cag (0.302389) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| jej (0.197844) | |
| col (0.195008) | |
| nje (0.16592) | |
| pty (0.142714) | |
| pla (0.133672) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| nbm (0.0993246) |