Non-Coding RNA Search

Ss1.1-Pig4-TMW8058I03.5

Sequence:


               
               AGTCGCCACAGCTGACGGCTGCGAGGGATTGAGATCAGAGCATTCCTTTGGAAATGAGTT
GCACAATTGAGAAGGCATTGGCTGATGCTAAAGCCCTTGTTGAAAGATTGAGAGACCATG
ACGATGCAGCGGAATCTTTGATTGAGCAAACCACAGCTCTCAGCAAGCGAGTAGAAGCTA
TGAAGCAGTATCAAGAGGAAATTCAAGAACTAAATGAAGTTGCAAGACATCGGCCACGGT
CCACATTAGTTATGGGAATACAGCAAGAAAACAGACAAATCAGAGAATTGCAACAAGAGA
ACAAAGAATTACGTACATCCCTGGAAGAACATCAGTCTGCCCTGGAACTTATAATGAGCA
AGTATCGAGAGCAAATGTTTAGATTGCTAATGGCTAGCAAAAAAGATGATCCAGGTATAA
TAATGAAGTTAAAAGAGCAACACTCCAAGGAATTACAAGCACATGTTGACCAGATAACTG
AAATGGCAGCAGTAATGAGGAAAGCCATTGAAATCGATGAGCAGCAGGGTTGCAAGGAAC
AGGAACGAATATTACAACTCGAACAGGAAAATAAAGGCTTGAGAGAGATCCTTCAAATAA
CTCGAGAATCGTTTTTGAACCTTAGGAAAGATGATGTGTCGGAAAGTACATCTTTGTCAG
CATTAGTGACCAATAGTGACCTGAGTCTGAGGAAGAGCTGAAGAGCTTTTAAGTCTGTGA
ACTTCTTACAAGGCTCCACGTAGTCACTGGGACTGGCCTATCAAGTGAATGAATTAACAG
AAAAGTCCATCTCAAGCTACACTTTGTTTTATTTTTTTCTATGATATGTACAGTGCACTG
GCAATGACATTTTTAAAAGATAGCAACAAAAAAATGCATAGTTAATGGTCATAGACTTTA
TTCCAAAATATAATTGAGAAATAGAAACTAAGCTTTTGTTAACTTGTAAACAAGTTAAAG
ATTTTCACGGTGACCGCTAACGTATTAAGAGCGTTCAGAAGTGCTGTTGGCTTTCTGGAT
GATACTTGAATAAACAAGAATATTCCCAACAAATGTCTGGGAATTCATCAAATTATCCCA
ATTTTAAAGTGCAGATTTTGCCACAATACTATGAATGGAAGACCATCATACTAAATTATA
TCCTCCCTATTTGGTGGAAGTTAACAAATAGCTTGTGTTCCATGAGACTTCAGCTTTAGT
GATTGCCTGTCTACCTTCTCCTTAATTCAAATTTTTGTCAAAGAAAGTTCAATTTGAAAG
GCTGTTAGGAATGTTTTACATGCACCATCAACAAAGGAGGTAATTTAATTTTACCTAATT
TATCATAATTAATACTGAGCTAGCAGTTATCCATGACTTGCTTTAGTATATGAACTACCA
TTTCAGGAATGAAAGAAAAGGAAATACTACTTTCTAAGAAAGAAGATCTTATAAGAGACA
TATTCAGTAGGTTAAACTACTCTTTTGAAAGAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCGCCACAGCTGACGGCTGCGAGGGATTGAGATCAGAGCATTCCTTTGGAAATGAGTT
GCACAATTGAGAAGGCATTGGCTGATGCTAAAGCCCTTGTTGAAAGATTGAGAGACCATG
ACGATGCAGCGGAATCTTTGATTGAGCAAACCACAGCTCTCAGCAAGCGAGTAGAAGCTA
TGAAGCAGTATCAAGAGGAAATTCAAGAACTAAATGAAGTTGCAAGACATCGGCCACGGT
CCACATTAGTTATGGGAATACAGCAAGAAAACAGACAAATCAGAGAATTGCAACAAGAGA
ACAAAGAATTACGTACATCCCTGGAAGAACATCAGTCTGCCCTGGAACTTATAATGAGCA
AGTATCGAGAGCAAATGTTTAGATTGCTAATGGCTAGCAAAAAAGATGATCCAGGTATAA
TAATGAAGTTAAAAGAGCAACACTCCAAGGAATTACAAGCACATGTTGACCAGATAACTG
AAATGGCAGCAGTAATGAGGAAAGCCATTGAAATCGATGAGCAGCAGGGTTGCAAGGAAC
AGGAACGAATATTACAACTCGAACAGGAAAATAAAGGCTTGAGAGAGATCCTTCAAATAA
CTCGAGAATCGTTTTTGAACCTTAGGAAAGATGATGTGTCGGAAAGTACATCTTTGTCAG
CATTAGTGACCAATAGTGACCTGAGTCTGAGGAAGAGCTGAAGAGCTTTTAAGTCTGTGA
ACTTCTTACAAGGCTCCACGTAGTCACTGGGACTGGCCTATCAAGTGAATGAATTAACAG
AAAAGTCCATCTCAAGCTACACTTTGTTTTATTTTTTTCTATGATATGTACAGTGCACTG
GCAATGACATTTTTAAAAGATAGCAACAAAAAAATGCATAGTTAATGGTCATAGACTTTA
TTCCAAAATATAATTGAGAAATAGAAACTAAGCTTTTGTTAACTTGTAAACAAGTTAAAG
ATTTTCACGGTGACCGCTAACGTATTAAGAGCGTTCAGAAGTGCTGTTGGCTTTCTGGAT
GATACTTGAATAAACAAGAATATTCCCAACAAATGTCTGGGAATTCATCAAATTATCCCA
ATTTTAAAGTGCAGATTTTGCCACAATACTATGAATGGAAGACCATCATACTAAATTATA
TCCTCCCTATTTGGTGGAAGTTAACAAATAGCTTGTGTTCCATGAGACTTCAGCTTTAGT
GATTGCCTGTCTACCTTCTCCTTAATTCAAATTTTTGTCAAAGAAAGTTCAATTTGAAAG
GCTGTTAGGAATGTTTTACATGCACCATCAACAAAGGAGGTAATTTAATTTTACCTAATT
TATCATAATTAATACTGAGCTAGCAGTTATCCATGACTTGCTTTAGTATATGAACTACCA
TTTCAGGAATGAAAGAAAAGGAAATACTACTTTCTAAGAAAGAAGATCTTATAAGAGACA
TATTCAGTAGGTTAAACTACTCTTTTGAAAGAATAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56388776|gb|AAH87696.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56388776|gb|AAH87696.1|

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1215-1380, gnl|bosTau2|chr21 (44569531-44569690)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1215-1380, gnl|bosTau2|chr21 (44569531-44569690)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sin (0.349895)
               

               
               nje (0.33184)
               

               
               kid (0.259471)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               nje (0.33184)
               

               
               kid (0.259471)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)

	sin (0.349895)
	nje (0.33184)
	kid (0.259471)
	sug (0.127291)
	cbl (0.114797)