Non-Coding RNA Search

Ss1.1-Pig4-TMW8058I08.3

Sequence:


               
               GAGAGGCTCGCGGGAGGCCGGGCTCCTGGGGCTTCCTTGTCCGCCGGCGCCGTTGGGGGA
TGTCCAGACCAGGGCGCAGAGGGCCTTGTCCGCCGGACCGCTCGGCGCACAGGCGGGGCG
GGGCCCAGCCGCCCTCGGACCTTCCAAAGACTCCAGCACAGGCGGGGCGGGGCCCAGCCG
CCCTCGGACCTTGGCCTGAGAGGGCGTCGTGGCCGGTCGGGGAAGGCGGCTCCGGCGCTC
GGTCCCACGCCGGCCCTGCCCAGGCGCCCTCGTCGCTGTGTGTGTCTTGGTGACCTTCAG
AAACAGACCCTCTGGACCGAGGGGCCACTGGTGTGGCCTTTTCACGCCCCAAGCCTGGGA
TGTGAGCGAGGGCCCTTCCCGCCGAGGAAGCCCGGAGGCTGTGGACGCGCCTTTCTCGGA
TGTGATTTAGCAAAACCTGCCACCCCTCCCGTGGACCAGGACGGGGCCAGTCGCGTGTGT
GGGAGACGCGGCTCAAGACGCGGTCGGCCCGGGTCTTACAGTCCAGGAAACGACGAAGCC
AGAACATGGACCCGTGTAAAAGGACCTTCCGTGTTGTGCTCTGATTTTGCGAAAAGCTCT
CAAATCCAGGGGATTCCGTGCTCAGCGGATGGAGGTTGACCCGGAACCGCAGACCTTGTA
TGAAGACGTGAAGTGCTGACACTATTTTTCCTGTTTCCTTTCCCTTTTTTTTTTTTTTAA
TCTGAATTGTGCCCTGTACTGCAGTTGTTTGAATAAAAGTTTTATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGCTCGCGGGAGGCCGGGCTCCTGGGGCTTCCTTGTCCGCCGGCGCCGTTGGGGGA
TGTCCAGACCAGGGCGCAGAGGGCCTTGTCCGCCGGACCGCTCGGCGCACAGGCGGGGCG
GGGCCCAGCCGCCCTCGGACCTTCCAAAGACTCCAGCACAGGCGGGGCGGGGCCCAGCCG
CCCTCGGACCTTGGCCTGAGAGGGCGTCGTGGCCGGTCGGGGAAGGCGGCTCCGGCGCTC
GGTCCCACGCCGGCCCTGCCCAGGCGCCCTCGTCGCTGTGTGTGTCTTGGTGACCTTCAG
AAACAGACCCTCTGGACCGAGGGGCCACTGGTGTGGCCTTTTCACGCCCCAAGCCTGGGA
TGTGAGCGAGGGCCCTTCCCGCCGAGGAAGCCCGGAGGCTGTGGACGCGCCTTTCTCGGA
TGTGATTTAGCAAAACCTGCCACCCCTCCCGTGGACCAGGACGGGGCCAGTCGCGTGTGT
GGGAGACGCGGCTCAAGACGCGGTCGGCCCGGGTCTTACAGTCCAGGAAACGACGAAGCC
AGAACATGGACCCGTGTAAAAGGACCTTCCGTGTTGTGCTCTGATTTTGCGAAAAGCTCT
CAAATCCAGGGGATTCCGTGCTCAGCGGATGGAGGTTGACCCGGAACCGCAGACCTTGTA
TGAAGACGTGAAGTGCTGACACTATTTTTCCTGTTTCCTTTCCCTTTTTTTTTTTTTTAA
TCTGAATTGTGCCCTGTACTGCAGTTGTTTGAATAAAAGTTTTATTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               15-768, gnl|bosTau2|chr19 (44835005-44835791)
               

               
               15-768, gnl|Hg17|chr17 (76698037-76698903)
               

               
               15-768, gnl|Mm7|chr11 (120110828-120111661)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-768, gnl|bosTau2|chr19 (44835005-44835791)
               

               
               15-768, gnl|Hg17|chr17 (76698037-76698903)
               

               
               15-768, gnl|Mm7|chr11 (120110828-120111661)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	15-768, gnl\|bosTau2\|chr19 (44835005-44835791)
	15-768, gnl\|Hg17\|chr17 (76698037-76698903)
	15-768, gnl\|Mm7\|chr11 (120110828-120111661)

	fcc (0.197785)
	aor (0.195274)
	nep (0.183925)
	ton (0.1755)
	pty (0.142714)
	pla (0.133672)
	cov (0.132153)
	ecc (0.115035)