Non-Coding RNA Search

Ss1.1-Pig4-TMW8058I15.5

Sequence:


               
               GAGCGACTCAGACCTAGAAGGCGAGATGACCCCTGAGGAGATTCTGGAGTGGGAGGAGCA
GCAACTAGATGAGCCTGTCAACTTTAGTGACTGCAAAATTGACCCTGCCCCCTTCCAGCT
GGTGGAGCGGACTTCATTGCACAAGACTCACACCATCTTCTCACTGCTGGGAGTGGACCA
TGCTTATGTCACCAGTATTGGCAGACTCATTGGAATTGTCACCCTAAAGGAGCTCCGGAA
AGCTATCGAGGGCTCTGTGACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTTGCCAGCTT
CCGTGACAGCGCCACCAGCAGCAGTGACACGGAGACCACCGAGGTGCATGCACTCTGGGG
GCCCCGCTCTCGCCACGGCCTCCCTCGGGAGGGCAGCCCTTCTGACAGCGACGACAAGTG
CCAGTGATCCCCTTGAGGGACAGCCCTGGATGGCGGTGGTCATGGCTGTTGGCCCAGATC
TTGCAGCTCTCCTATTCCTTCTGCCTTGGGAAGGCAGGAGCTCCAGCCCCACTTCCAGAC
CTGGAGTGCTAGCTTCTCCTGGCTCATCCTACCTGGAATCTGATCCAGTGCCCACCTGCA
GCAAGTGTTCTAAAGGCAGAAAGATGAGCACTGCCCTGGTAGGATGGGAGTGGAGTTGCT
TGACCCCTGCTCCCCTTGTGATGGGGGAAGGGGTAGGACTAAGATGGGTTTATACTGGAA
CCTCCAATGACCAGATGTATATAGAGATTTACAAAGATTTTTATATTAATTTAATAAAAC
AAATTCTTAAATAGAACAAAATAAACACCTAATGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGACTCAGACCTAGAAGGCGAGATGACCCCTGAGGAGATTCTGGAGTGGGAGGAGCA
GCAACTAGATGAGCCTGTCAACTTTAGTGACTGCAAAATTGACCCTGCCCCCTTCCAGCT
GGTGGAGCGGACTTCATTGCACAAGACTCACACCATCTTCTCACTGCTGGGAGTGGACCA
TGCTTATGTCACCAGTATTGGCAGACTCATTGGAATTGTCACCCTAAAGGAGCTCCGGAA
AGCTATCGAGGGCTCTGTGACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTTGCCAGCTT
CCGTGACAGCGCCACCAGCAGCAGTGACACGGAGACCACCGAGGTGCATGCACTCTGGGG
GCCCCGCTCTCGCCACGGCCTCCCTCGGGAGGGCAGCCCTTCTGACAGCGACGACAAGTG
CCAGTGATCCCCTTGAGGGACAGCCCTGGATGGCGGTGGTCATGGCTGTTGGCCCAGATC
TTGCAGCTCTCCTATTCCTTCTGCCTTGGGAAGGCAGGAGCTCCAGCCCCACTTCCAGAC
CTGGAGTGCTAGCTTCTCCTGGCTCATCCTACCTGGAATCTGATCCAGTGCCCACCTGCA
GCAAGTGTTCTAAAGGCAGAAAGATGAGCACTGCCCTGGTAGGATGGGAGTGGAGTTGCT
TGACCCCTGCTCCCCTTGTGATGGGGGAAGGGGTAGGACTAAGATGGGTTTATACTGGAA
CCTCCAATGACCAGATGTATATAGAGATTTACAAAGATTTTTATATTAATTTAATAAAAC
AAATTCTTAAATAGAACAAAATAAACACCTAATGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50769086|ref|XP_423073.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50769086|ref|XP_423073.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               470-768, + strand, RNAz p=0.993276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-768, + strand, RNAz p=0.993276

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC021578, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC021578, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               39-145, gnl|bosTau2|chr1 (51109773-51109879)
               

               
               39-145, gnl|canFam2|chr34 (20236120-20236200)
               

               
               39-145, gnl|danRer3|chr2 (7598641-7598718)
               

               
               39-145, gnl|dasNov1|scaffold_70768 (6884-6964)
               

               
               39-145, gnl|echTel1|scaffold_91171 (803-723)
               

               
               39-145, gnl|fr1|chrUn (120563622-120563702)
               

               
               39-145, gnl|galGal2|chr1 (71694517-71694597)
               

               
               39-145, gnl|hg17|chr3 (185552499-185552579)
               

               
               39-145, gnl|Hg17|chr3 (185552609-185552503)
               

               
               39-145, gnl|mm7|chr16 (20257191-20257271)
               

               
               39-145, gnl|Mm7|chr16 (20257301-20257195)
               

               
               39-145, gnl|monDom2|scaffold_180 (100486-100566)
               

               
               39-145, gnl|oryCun1|scaffold_213322 (75440-75520)
               

               
               39-145, gnl|panTro1|chr2 (189509418-189509498)
               

               
               39-145, gnl|rheMac2|chr2 (102310839-102310759)
               

               
               39-145, gnl|rn3|chr11 (82494676-82494596)
               

               
               39-145, gnl|tetNig1|chr16 (7074510-7074430)
               

               
               39-145, gnl|xenTro1|scaffold_244 (446370-446448)
               


               
               231-816, gnl|bosTau2|chr1 (51114463-51115046)
               

               
               231-816, gnl|Hg17|chr3 (185547292-185546691)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-145, gnl|bosTau2|chr1 (51109773-51109879)
               

               
               39-145, gnl|canFam2|chr34 (20236120-20236200)
               

               
               39-145, gnl|danRer3|chr2 (7598641-7598718)
               

               
               39-145, gnl|dasNov1|scaffold_70768 (6884-6964)
               

               
               39-145, gnl|echTel1|scaffold_91171 (803-723)
               

               
               39-145, gnl|fr1|chrUn (120563622-120563702)
               

               
               39-145, gnl|galGal2|chr1 (71694517-71694597)
               

               
               39-145, gnl|hg17|chr3 (185552499-185552579)
               

               
               39-145, gnl|Hg17|chr3 (185552609-185552503)
               

               
               39-145, gnl|mm7|chr16 (20257191-20257271)
               

               
               39-145, gnl|Mm7|chr16 (20257301-20257195)
               

               
               39-145, gnl|monDom2|scaffold_180 (100486-100566)
               

               
               39-145, gnl|oryCun1|scaffold_213322 (75440-75520)
               

               
               39-145, gnl|panTro1|chr2 (189509418-189509498)
               

               
               39-145, gnl|rheMac2|chr2 (102310839-102310759)
               

               
               39-145, gnl|rn3|chr11 (82494676-82494596)
               

               
               39-145, gnl|tetNig1|chr16 (7074510-7074430)
               

               
               39-145, gnl|xenTro1|scaffold_244 (446370-446448)
               


               
               231-816, gnl|bosTau2|chr1 (51114463-51115046)
               

               
               231-816, gnl|Hg17|chr3 (185547292-185546691)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.351185)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               nco (0.161734)

	39-145, gnl\|bosTau2\|chr1 (51109773-51109879)
	39-145, gnl\|canFam2\|chr34 (20236120-20236200)
	39-145, gnl\|danRer3\|chr2 (7598641-7598718)
	39-145, gnl\|dasNov1\|scaffold_70768 (6884-6964)
	39-145, gnl\|echTel1\|scaffold_91171 (803-723)
	39-145, gnl\|fr1\|chrUn (120563622-120563702)
	39-145, gnl\|galGal2\|chr1 (71694517-71694597)
	39-145, gnl\|hg17\|chr3 (185552499-185552579)
	39-145, gnl\|Hg17\|chr3 (185552609-185552503)
	39-145, gnl\|mm7\|chr16 (20257191-20257271)
	39-145, gnl\|Mm7\|chr16 (20257301-20257195)
	39-145, gnl\|monDom2\|scaffold_180 (100486-100566)
	39-145, gnl\|oryCun1\|scaffold_213322 (75440-75520)
	39-145, gnl\|panTro1\|chr2 (189509418-189509498)
	39-145, gnl\|rheMac2\|chr2 (102310839-102310759)
	39-145, gnl\|rn3\|chr11 (82494676-82494596)
	39-145, gnl\|tetNig1\|chr16 (7074510-7074430)
	39-145, gnl\|xenTro1\|scaffold_244 (446370-446448)

	231-816, gnl\|bosTau2\|chr1 (51114463-51115046)
	231-816, gnl\|Hg17\|chr3 (185547292-185546691)