Non-Coding RNA Search

Ss1.1-Pig4-TMW8058I21.5

Sequence:


               
               GAAGATGGCGCCGCGAGGTGAGGTTCTGGAGGTAAACGGTTATCTTCCACCCCCCTGGAA
ATCCTCTTCTTTCTGAACGGGTGGTATTATGCTACCTATTTCCTGCTGGAACTCTTCATA
TTTCTGTATAAAGGTCTCCTGCTACCATATCCAACAGCCAATCTGGTCCTGGATGTGGTG
ATGCTCTTCCTTTATCTTGGCATTGAAGCAATTCGACTGTTTTTTGGTACAAAGGGAAAC
CTCTGCCAGCGACAGATGCCACTTGGTATTAGTGTGGCCTTGACCTTCCCATCTGCCGTG
ATGGCCACCTATTACCTGCTGCTGCAGACGTATGTGCTCCGCCTGGAAGCCGTCATGAAC
AGCATCTTGCTCTTCTTCTGTGGCTCAGAGCTGCTGCTTGAGGTGCTCACCTTGACGGCT
TTCTCCAGTAGGGACAGGATTTGACGTGCAAAACTGTCAGCCAGCAGCCCTCACAGGCTG
AGACCACACACACATCTGGTACTTGAGCCACACCAGTGAGGAATGCTGGGTCAAGTTGTC
CTGGGAGAGGTGGCAGCTTTCCCTCAGCACAGACACTTGGGGAACAAACGGAGCCTAAGT
CTGCTGGGCACCATCTTCTAAACCAGGCCTATCAGCCCAGGCCTCTTGTGCACTCCCGTA
TAGGGAGGGGCGAGACCGAGCCTCTCCTGGCCCTTCTCAGAACCAGTTCCCTTCTGACCT
CCAGGTCTCCTCTTTGATCGTCGTGGCCAGAGCATCTTGTGCAGACCGTGTAGGCTTCTT
AGGTGGGACGTGAGCCACACCCCCGTGTGTGCTGTGCCTCACATGTCCTGTAAACCATGG
AGCGCCTCAGGAGGGCCTGCTCCCGGAGGGATGCAGAAGCCTCTCGTCCCATTTCTCAGA
GACTGAGCTCCAGGACTTTTTAGTAGCTCATAGTGTTATTTTCCTACTCTCATCATGAAA
CAAACATTATTTTATAATAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATGGCGCCGCGAGGTGAGGTTCTGGAGGTAAACGGTTATCTTCCACCCCCCTGGAA
ATCCTCTTCTTTCTGAACGGGTGGTATTATGCTACCTATTTCCTGCTGGAACTCTTCATA
TTTCTGTATAAAGGTCTCCTGCTACCATATCCAACAGCCAATCTGGTCCTGGATGTGGTG
ATGCTCTTCCTTTATCTTGGCATTGAAGCAATTCGACTGTTTTTTGGTACAAAGGGAAAC
CTCTGCCAGCGACAGATGCCACTTGGTATTAGTGTGGCCTTGACCTTCCCATCTGCCGTG
ATGGCCACCTATTACCTGCTGCTGCAGACGTATGTGCTCCGCCTGGAAGCCGTCATGAAC
AGCATCTTGCTCTTCTTCTGTGGCTCAGAGCTGCTGCTTGAGGTGCTCACCTTGACGGCT
TTCTCCAGTAGGGACAGGATTTGACGTGCAAAACTGTCAGCCAGCAGCCCTCACAGGCTG
AGACCACACACACATCTGGTACTTGAGCCACACCAGTGAGGAATGCTGGGTCAAGTTGTC
CTGGGAGAGGTGGCAGCTTTCCCTCAGCACAGACACTTGGGGAACAAACGGAGCCTAAGT
CTGCTGGGCACCATCTTCTAAACCAGGCCTATCAGCCCAGGCCTCTTGTGCACTCCCGTA
TAGGGAGGGGCGAGACCGAGCCTCTCCTGGCCCTTCTCAGAACCAGTTCCCTTCTGACCT
CCAGGTCTCCTCTTTGATCGTCGTGGCCAGAGCATCTTGTGCAGACCGTGTAGGCTTCTT
AGGTGGGACGTGAGCCACACCCCCGTGTGTGCTGTGCCTCACATGTCCTGTAAACCATGG
AGCGCCTCAGGAGGGCCTGCTCCCGGAGGGATGCAGAAGCCTCTCGTCCCATTTCTCAGA
GACTGAGCTCCAGGACTTTTTAGTAGCTCATAGTGTTATTTTCCTACTCTCATCATGAAA
CAAACATTATTTTATAATAAATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61855398|ref|XP_584752.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61855398|ref|XP_584752.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               622-739, - strand, RNAz p=0.694857

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               622-739, - strand, RNAz p=0.694857

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-979, gnl|bosTau2|chr29 (32564651-32565589)
               

               
               49-979, gnl|Hg17|chr11 (60917296-60922880)
               

               
               49-979, gnl|Mm7|chr19 (10235272-10230602)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-979, gnl|bosTau2|chr29 (32564651-32565589)
               

               
               49-979, gnl|Hg17|chr11 (60917296-60922880)
               

               
               49-979, gnl|Mm7|chr19 (10235272-10230602)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               cag (0.151194)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               eep (0.122564)

	49-979, gnl\|bosTau2\|chr29 (32564651-32565589)
	49-979, gnl\|Hg17\|chr11 (60917296-60922880)
	49-979, gnl\|Mm7\|chr19 (10235272-10230602)