Ss1.1-Pig4-TMW8058J05.3.5
|
GGAACGCAGGCGGGCACAAGAAGCGGATTCAGGAAGTTGGTGAACCATCTAAAGAAGAGA
AGGCTGTAGCCAAGTTTCTTCGATTCAACTGTCCAACAAAGTCCACCAATATGATGGGTC
ACCGGGTGGATTATTTTATTGCTTCAAAAGCAGTGGATTGCCTTTTGGATTCAAAGTGGG
CAAAGGCCAAGAAAGGCGAGGAAGCTTTATTTACAACGAGGGAGTCTGTGGTTGACTACT
GCAACAGGCTTTTAAAGAAGCAGTTTTTTCATCGGGCACTGAAAGTAATGAAAATGAAGT
ATGAGAAAGACATAAAAAAAGAAAAAGAAAAAGGAAAAGCTGAAAGTGGAAAAGAAGAAG
ATAAAAAGAGCAAGAAAGAAAATCTGAAGGATGAAAAAACAAAAAAGGAAAAAGAAAAAA
AAAAAGATGGTGAAAAGGAAGAATCCAAAAAGGAGGAAACACCTGGAACTCCCAAAAAGA
AGGAAACTAAGAAAAAATTCAAGCTTGAGCCACATGATGATCAAGTTTTTCTGGATGGAA
ATGAGGTATTTGTGTGGATCTATGACCCAGTTCACTTTAAAACATTTGTCATGGGATTAA
TTCTTGTGATTGCAGTGATAGCAGCCACCCTCTTCCCTCTCTGGCCAGCAGAAATGAGAG
TAGGTGTTTATTACCTCAGTGTGGGTGCAGGCTGTTTTGTAGCCAGCATTCTTCTCCTTG
CTGTTGCTCGTTGCATTTTATTTCTCATCATTTGGCTCATAACTGGAGGAAGGCACCATT
TTTGGTTCTTGCCAAATCTGACTGCTGACGTGGGCTTCATTGACTCCTTCAGGCCTCTTT
ACACACATGAATATAAAGGACCAAAAGCAGACTTAAAGAAAGATGAGAAGTCTGAAACCA
AAAAGCAGCAGAAGTCTGACAGTGAAGAAAAGTCAGACAGTGAGAAAAAGGAAGATGAGG
AGGGAAAAGTAGGACCAGGAAATCATGGAACAGAAGGCTCAGGTGGAGAACGGCATTCAG
ACACAGACAGTGACAGGAGGGAAGATGACCGATCCCAGCACAGTAGTGGAAATGGGAATG
ATTTTGAAATGATCACAAAAGAAGAACTGGAACAGCAAACAGATGGGGATTGTGAAGAGG
AGGAAGAAGACAATGATGGAGAAACAAGTAAATCTTCACGTGAAAAATCATAATCTGACT
AATTTGGGGACTAAACAAGTGCAAGAGGTTGGATTTTCTATGTTGGCTGATCATCGTAAT
GTACACATGACATTTGTAGCATTCTTTAAATCCATTACCGAAATGGATTTGACATCTAAG
CAATTATATTCAGTCCTTCATTTCATATAATACTATTATTGGTACAGTCTAAAGCCATTT
ATAAGTTTTATCTATTTGATAATTTTACAATAAATAGTTGTCATTCATTTTGATAGTTAT
CAGAGATGCACTTTCCACAATGACATTTAGATTAATGGCATTTTTGATAGCTATTTGGCT
TTTTACTGTTAGACTAATCAAAAGTAACTAAAAGGGATAAAAACAAACACCAACATTTCA
GATTATGCATATTTATGTAGCCCTTTCGCAGTTTCTTTGAGATGAAATGCTTAAACTCAT
TTTTCTTAATAGTTAAGTTTTTGTTGATTATAAAATTATACCAGAAAATTTCTAAGATCC
AGAGTTAGCAGGGTTCACAAGCCTTTTGTGGAAACAAGCCAACTAGTCATAATGCAACAT
CACTTTTAGTTTAGCTACAAATTCTCCTTTTCCAACTTAGGAAATCCAAACTGATTTGTG
CATCTGATTCAGAGTAAGATGGTCATCTCCAACAGAGGAAGAAAGCAGCATTGGCTGGAA
GGTGATAGCTCTTCTTCCCATTTCCCTGTCGTAAAGTAAAATGTATTCTGTACATAATTT
ACAAATAAACATTTTATTTTAATTGTTACTTATTATTTAGACATTTTCTCAACACTTAAA
ATTTGTAAAATTAAGACCATTTAAGGGTATGTTTTTAGAGAAGTGGAAGTTTCAGTAACC
TACAGAACTTCTGTGATCTTTCTACAGCAGCTTCAGTTTTGTGCCAACATTCCATGTATT
TGAATATGAGTTAAATCAATCCTTATTAAATAAGAGCAAACTTAAAGTAGCTGTTTGTAC
GCCTTAATGTTCATTTTGATTTATCTTAAACCTCTACATTCAGAAACTGGGTACTGAATT
ATCATACCAGGAGAACTGCTATGAAAGATAATTTACTGTTCTAAAATATCAATTTAAAAT
AAAGAACATAAAGGAAAAAAAAAAAGAACCATTGGACTCTTTTAAACTAGTTTTGCAGTT
TGATTTTGTCTTGCAAACCTTGGTCGCAAATCTTTAGGAAAAAAATCTTGTGTTTACTTA
TAAACATAGTCATTCCTTGGAGTTATACTCTTATAAAATGATAATATTAAATTATTTTCC
TTCAGTCACAGAGCATTTTGCTTTGTAGTTGAAATAGATGGTGTGTGTAGGTCTTTATTT
TTCTTTAGGCTATTTCCCATCTAAGTGTTAGACTAAAGAAGATGTTAAATTTTTTAATTG
TGAAAAATATACTTTCTGTATAATGACACGTTTTGTTAAACATGGCTTGTTTGCTTCTTT
ATAGTATTCCTTGTAAGTGGACAGAAATGTGGCTGTTTGATGTTAGTACAACTCTATCAA
GGTTGCAGTCAACCAGTTTGTTTCCTCCTAACAAGTGTTCACTGATTTAAGTGCCTGGGT
GTTTCCCCCTCAGATTTTCAGAGCTCTGCTGCTTTGTTTCCACAGTAAGGGATGCATAAT
TATAGCTTCTGAGCTTCTTAATCACCAGTAGCATTAAACCTATTTGGGAATATGATAATG
GCACCAAAAGTGTTTTTCAAAAATAAAAATGATTTAAACTTTACTACTATGATAATGCTT
AGGCACTCAATATTTATCCTTAAGGTTCTTTATAACATATATATATACTACATCTACCCT
TTAAGACATTTGGAGCATGGCAGGAAAGTCAGATTCTTATTGATATGTGTGGATTCTTAA
AGAATGTTAATATAAATTTTTATAAATATTTGGTGGTCCCTGGGGAAAGTGTCATTCTTA
CTGTGGTTAGAAAGCAAGTCAGAAATTTCAGCTTTTACCATTCAAAGTTGTTTACTTTAA
ACAAACAGACCAAAAAAATCTAAAGGCTGCCACTATTATATTTCTCAGAATAATAGATGG
CTGTCTTTGTTGACTAACATTAGATATTCTTTTGCCAGAACATGGAAAGCTGTTTACCTT
AGTCATTAGAATTGTGATTTTAAAAAAAAAAGAAAGAAAAAAAAAGAAAAGAACTTCAGG
TTTGCTATGCTACTATAAATAGAAGCATGAAGCTTCTAGGATTTATTGTGGAGTGGGTAT
AAAATAGCCTAACTAATACGTAGGATTGAATTAACTGAGTCCAGATTATAATAAAAATGC
ATTTGTAAATGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAACGCAGGCGGGCACAAGAAGCGGATTCAGGAAGTTGGTGAACCATCTAAAGAAGAGA
AGGCTGTAGCCAAGTTTCTTCGATTCAACTGTCCAACAAAGTCCACCAATATGATGGGTC
ACCGGGTGGATTATTTTATTGCTTCAAAAGCAGTGGATTGCCTTTTGGATTCAAAGTGGG
CAAAGGCCAAGAAAGGCGAGGAAGCTTTATTTACAACGAGGGAGTCTGTGGTTGACTACT
GCAACAGGCTTTTAAAGAAGCAGTTTTTTCATCGGGCACTGAAAGTAATGAAAATGAAGT
ATGAGAAAGACATAAAAAAAGAAAAAGAAAAAGGAAAAGCTGAAAGTGGAAAAGAAGAAG
ATAAAAAGAGCAAGAAAGAAAATCTGAAGGATGAAAAAACAAAAAAGGAAAAAGAAAAAA
AAAAAGATGGTGAAAAGGAAGAATCCAAAAAGGAGGAAACACCTGGAACTCCCAAAAAGA
AGGAAACTAAGAAAAAATTCAAGCTTGAGCCACATGATGATCAAGTTTTTCTGGATGGAA
ATGAGGTATTTGTGTGGATCTATGACCCAGTTCACTTTAAAACATTTGTCATGGGATTAA
TTCTTGTGATTGCAGTGATAGCAGCCACCCTCTTCCCTCTCTGGCCAGCAGAAATGAGAG
TAGGTGTTTATTACCTCAGTGTGGGTGCAGGCTGTTTTGTAGCCAGCATTCTTCTCCTTG
CTGTTGCTCGTTGCATTTTATTTCTCATCATTTGGCTCATAACTGGAGGAAGGCACCATT
TTTGGTTCTTGCCAAATCTGACTGCTGACGTGGGCTTCATTGACTCCTTCAGGCCTCTTT
ACACACATGAATATAAAGGACCAAAAGCAGACTTAAAGAAAGATGAGAAGTCTGAAACCA
AAAAGCAGCAGAAGTCTGACAGTGAAGAAAAGTCAGACAGTGAGAAAAAGGAAGATGAGG
AGGGAAAAGTAGGACCAGGAAATCATGGAACAGAAGGCTCAGGTGGAGAACGGCATTCAG
ACACAGACAGTGACAGGAGGGAAGATGACCGATCCCAGCACAGTAGTGGAAATGGGAATG
ATTTTGAAATGATCACAAAAGAAGAACTGGAACAGCAAACAGATGGGGATTGTGAAGAGG
AGGAAGAAGACAATGATGGAGAAACAAGTAAATCTTCACGTGAAAAATCATAATCTGACT
AATTTGGGGACTAAACAAGTGCAAGAGGTTGGATTTTCTATGTTGGCTGATCATCGTAAT
GTACACATGACATTTGTAGCATTCTTTAAATCCATTACCGAAATGGATTTGACATCTAAG
CAATTATATTCAGTCCTTCATTTCATATAATACTATTATTGGTACAGTCTAAAGCCATTT
ATAAGTTTTATCTATTTGATAATTTTACAATAAATAGTTGTCATTCATTTTGATAGTTAT
CAGAGATGCACTTTCCACAATGACATTTAGATTAATGGCATTTTTGATAGCTATTTGGCT
TTTTACTGTTAGACTAATCAAAAGTAACTAAAAGGGATAAAAACAAACACCAACATTTCA
GATTATGCATATTTATGTAGCCCTTTCGCAGTTTCTTTGAGATGAAATGCTTAAACTCAT
TTTTCTTAATAGTTAAGTTTTTGTTGATTATAAAATTATACCAGAAAATTTCTAAGATCC
AGAGTTAGCAGGGTTCACAAGCCTTTTGTGGAAACAAGCCAACTAGTCATAATGCAACAT
CACTTTTAGTTTAGCTACAAATTCTCCTTTTCCAACTTAGGAAATCCAAACTGATTTGTG
CATCTGATTCAGAGTAAGATGGTCATCTCCAACAGAGGAAGAAAGCAGCATTGGCTGGAA
GGTGATAGCTCTTCTTCCCATTTCCCTGTCGTAAAGTAAAATGTATTCTGTACATAATTT
ACAAATAAACATTTTATTTTAATTGTTACTTATTATTTAGACATTTTCTCAACACTTAAA
ATTTGTAAAATTAAGACCATTTAAGGGTATGTTTTTAGAGAAGTGGAAGTTTCAGTAACC
TACAGAACTTCTGTGATCTTTCTACAGCAGCTTCAGTTTTGTGCCAACATTCCATGTATT
TGAATATGAGTTAAATCAATCCTTATTAAATAAGAGCAAACTTAAAGTAGCTGTTTGTAC
GCCTTAATGTTCATTTTGATTTATCTTAAACCTCTACATTCAGAAACTGGGTACTGAATT
ATCATACCAGGAGAACTGCTATGAAAGATAATTTACTGTTCTAAAATATCAATTTAAAAT
AAAGAACATAAAGGAAAAAAAAAAAGAACCATTGGACTCTTTTAAACTAGTTTTGCAGTT
TGATTTTGTCTTGCAAACCTTGGTCGCAAATCTTTAGGAAAAAAATCTTGTGTTTACTTA
TAAACATAGTCATTCCTTGGAGTTATACTCTTATAAAATGATAATATTAAATTATTTTCC
TTCAGTCACAGAGCATTTTGCTTTGTAGTTGAAATAGATGGTGTGTGTAGGTCTTTATTT
TTCTTTAGGCTATTTCCCATCTAAGTGTTAGACTAAAGAAGATGTTAAATTTTTTAATTG
TGAAAAATATACTTTCTGTATAATGACACGTTTTGTTAAACATGGCTTGTTTGCTTCTTT
ATAGTATTCCTTGTAAGTGGACAGAAATGTGGCTGTTTGATGTTAGTACAACTCTATCAA
GGTTGCAGTCAACCAGTTTGTTTCCTCCTAACAAGTGTTCACTGATTTAAGTGCCTGGGT
GTTTCCCCCTCAGATTTTCAGAGCTCTGCTGCTTTGTTTCCACAGTAAGGGATGCATAAT
TATAGCTTCTGAGCTTCTTAATCACCAGTAGCATTAAACCTATTTGGGAATATGATAATG
GCACCAAAAGTGTTTTTCAAAAATAAAAATGATTTAAACTTTACTACTATGATAATGCTT
AGGCACTCAATATTTATCCTTAAGGTTCTTTATAACATATATATATACTACATCTACCCT
TTAAGACATTTGGAGCATGGCAGGAAAGTCAGATTCTTATTGATATGTGTGGATTCTTAA
AGAATGTTAATATAAATTTTTATAAATATTTGGTGGTCCCTGGGGAAAGTGTCATTCTTA
CTGTGGTTAGAAAGCAAGTCAGAAATTTCAGCTTTTACCATTCAAAGTTGTTTACTTTAA
ACAAACAGACCAAAAAAATCTAAAGGCTGCCACTATTATATTTCTCAGAATAATAGATGG
CTGTCTTTGTTGACTAACATTAGATATTCTTTTGCCAGAACATGGAAAGCTGTTTACCTT
AGTCATTAGAATTGTGATTTTAAAAAAAAAAGAAAGAAAAAAAAAGAAAAGAACTTCAGG
TTTGCTATGCTACTATAAATAGAAGCATGAAGCTTCTAGGATTTATTGTGGAGTGGGTAT
AAAATAGCCTAACTAATACGTAGGATTGAATTAACTGAGTCCAGATTATAATAAAAATGC
ATTTGTAAATGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
30-141, gnl|bosTau2|chr1 (63059431-63059320) |
|
30-141, gnl|Hg17|chr3 (171176095-171176206) |
|
30-141, gnl|Mm7|chr3 (30612094-30612205) |
| |
|
246-453, gnl|bosTau2|chr1 (63052662-63052455) |
|
246-453, gnl|Hg17|chr3 (171183195-171183402) |
|
246-453, gnl|Mm7|chr3 (30621786-30621993) |
| |
|
726-3333, gnl|bosTau2|chr1 (62981876-62979285) |
|
726-3333, gnl|Hg17|chr3 (171193083-171195695) |
|
726-3333, gnl|Mm7|chr3 (30630465-30632936) |
| |
|
3347-3489, gnl|bosTau2|chr1 (62979290-62979136) |
|
3347-3489, gnl|canFam2|chr34 (37589157-37589712) |
|
3347-3489, gnl|dasNov1|scaffold_3055 (141656-141090) |
|
3347-3489, gnl|echTel1|scaffold_276168 (36586-37090) |
|
3347-3489, gnl|hg17|chr3 (171195600-171196157) |
|
3347-3489, gnl|Hg17|chr3 (171195691-171195853) |
|
3347-3489, gnl|loxAfr1|scaffold_6438 (35811-35288) |
|
3347-3489, gnl|mm7|chr3 (30632861-30633369) |
|
3347-3489, gnl|Mm7|chr3 (30632931-30633083) |
|
3347-3489, gnl|monDom2|scaffold_52 (1996030-1995387) |
|
3347-3489, gnl|oryCun1|scaffold_182679 (74177-74717) |
|
3347-3489, gnl|panTro1|chr2 (174685687-174686247) |
|
3347-3489, gnl|rheMac2|chr2 (117018446-117017889) |
|
3347-3489, gnl|rn3|chr2 (116933338-116932844) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
30-141, gnl|bosTau2|chr1 (63059431-63059320) |
|
30-141, gnl|Hg17|chr3 (171176095-171176206) |
|
30-141, gnl|Mm7|chr3 (30612094-30612205) |
| |
|
246-453, gnl|bosTau2|chr1 (63052662-63052455) |
|
246-453, gnl|Hg17|chr3 (171183195-171183402) |
|
246-453, gnl|Mm7|chr3 (30621786-30621993) |
| |
|
726-3333, gnl|bosTau2|chr1 (62981876-62979285) |
|
726-3333, gnl|Hg17|chr3 (171193083-171195695) |
|
726-3333, gnl|Mm7|chr3 (30630465-30632936) |
| |
|
3347-3489, gnl|bosTau2|chr1 (62979290-62979136) |
|
3347-3489, gnl|canFam2|chr34 (37589157-37589712) |
|
3347-3489, gnl|dasNov1|scaffold_3055 (141656-141090) |
|
3347-3489, gnl|echTel1|scaffold_276168 (36586-37090) |
|
3347-3489, gnl|hg17|chr3 (171195600-171196157) |
|
3347-3489, gnl|Hg17|chr3 (171195691-171195853) |
|
3347-3489, gnl|loxAfr1|scaffold_6438 (35811-35288) |
|
3347-3489, gnl|mm7|chr3 (30632861-30633369) |
|
3347-3489, gnl|Mm7|chr3 (30632931-30633083) |
|
3347-3489, gnl|monDom2|scaffold_52 (1996030-1995387) |
|
3347-3489, gnl|oryCun1|scaffold_182679 (74177-74717) |
|
3347-3489, gnl|panTro1|chr2 (174685687-174686247) |
|
3347-3489, gnl|rheMac2|chr2 (117018446-117017889) |
|
3347-3489, gnl|rn3|chr2 (116933338-116932844) |
|
kid (1.81629) |
|
lyg (1.33103) |
|
sag (1.27901) |
|
ret (1.1586) |
|
gul (1.06553) |
|
rec (1.03842) |
|
aor (0.976372) |
|
sug (0.891039) |
|
fco (0.78604) |
|
tra (0.738552) |
|
fat (0.737137) |
|
csk (0.70373) |
|
spc (0.680195) |
|
thg (0.633955) |
|
liv (0.585137) |
|
lin (0.582411) |
|
mgp (0.461361) |
|
hyp (0.42851) |
|
cty (0.41632) |
|
cmu (0.372787) |
|
cbl (0.344392) |
|
fhi (0.339155) |
|
isp (0.300752) |
|
spl (0.286369) |
|
cbe (0.239234) |
|
ece (0.229305) |
|
nms (0.213858) |
|
tes (0.207814) |
|
hea (0.204499) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cki (0.165235) |
|
tbr (0.154178) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
bla (0.124347) |
|
cly (0.120642) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
kid (1.81629) |
|
lyg (1.33103) |
|
sag (1.27901) |
|
ret (1.1586) |
|
gul (1.06553) |
|
rec (1.03842) |
|
aor (0.976372) |
|
sug (0.891039) |
|
fco (0.78604) |
|
tra (0.738552) |
|
fat (0.737137) |
|
csk (0.70373) |
|
spc (0.680195) |
|
thg (0.633955) |
|
liv (0.585137) |
|
lin (0.582411) |
|
mgp (0.461361) |
|
hyp (0.42851) |
|
cty (0.41632) |
|
cmu (0.372787) |
|
cbl (0.344392) |
|
fhi (0.339155) |
|
isp (0.300752) |
|
spl (0.286369) |
|
cbe (0.239234) |
|
ece (0.229305) |
|
nms (0.213858) |
|
tes (0.207814) |
|
hea (0.204499) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cki (0.165235) |
|
tbr (0.154178) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
bla (0.124347) |
|
cly (0.120642) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
jca (0.11396) |
