Non-Coding RNA Search

Ss1.1-Pig4-TMW8058J16.3

Sequence:


               
               TAGGTCTTTTCAGACATCTTACTATGGATTTATGAAGGGTTTTCAGTCTATGAAGGAAAT
CACTAAGTGCCTCTCTTTCTTCAAAGCAATATTATTTCCAAGTGTATGAATTTGTTGGAA
AACTTTCCCATAGAAAACGTGGTGACTTGCCTGTACTGTAATGACTTATTTGTGTTCACT
ATTTAAGACTTTCTACATAGACATAAACCACTGTCATGTTCTCTGTGCAGAAGGCATTAG
ATAATCATACATAATAATTGGGGACTTTCATACAAGTATGGGATCAGAAGTACTTGTCTG
ACATTTTCCCATGGCTAAGTCTTACATTAAAGAAAACGAATTAGAGAGAAATTTTGCACA
CAGAAAAATTTTCACTTAAAGTGTTGGTTACCATGAAGGCATAGATAATGAACCTGTCAT
AAAATTATAAATTATAATGGCACTAAGGGGGTGTCTTTTTCTAAACCGAACTGTCTCTGC
TTATGGATGTAAAACTAAATTGCTCCCTTGTCAAGTACAATGGAATCATCGTGCACACGT
GACACATGTATGCAGGTCATCATGTGGAGCTCCCTGCCTTATGTGGCTTGAACATATCAT
GCTACACATTCAGCACAGAGTAAGAATTCTCGATTTGTTTCCTGTTCAACAACCCAGTGC
TCTTAATTTTATCACTTCTCTAATAAGACCTTCTGAAATAAATAATCTTTTGGAGTCTTT
CCCCAGCTCTCTATCATGCATTTGCAATAGAATGACAGTGGAATAAATTTACAGTATTGA
GTTGATATAGATTTTATGAACAGTGCTTTGATATTATGCCAAAGGGAAAACTGTCCCAAT
TAAACTAGATTAAATAGGGTGGCTAAAAAAAAAATAAAATAAAAACACTGGAAATTACTT
TTCTCACTTTCTCTTGATGCAATGAAGGGAATATGACACTACAGTATACGGTGTTGTCAG
TGTTATATGATGCACAAAATATTTGGATTATTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGTCTTTTCAGACATCTTACTATGGATTTATGAAGGGTTTTCAGTCTATGAAGGAAAT
CACTAAGTGCCTCTCTTTCTTCAAAGCAATATTATTTCCAAGTGTATGAATTTGTTGGAA
AACTTTCCCATAGAAAACGTGGTGACTTGCCTGTACTGTAATGACTTATTTGTGTTCACT
ATTTAAGACTTTCTACATAGACATAAACCACTGTCATGTTCTCTGTGCAGAAGGCATTAG
ATAATCATACATAATAATTGGGGACTTTCATACAAGTATGGGATCAGAAGTACTTGTCTG
ACATTTTCCCATGGCTAAGTCTTACATTAAAGAAAACGAATTAGAGAGAAATTTTGCACA
CAGAAAAATTTTCACTTAAAGTGTTGGTTACCATGAAGGCATAGATAATGAACCTGTCAT
AAAATTATAAATTATAATGGCACTAAGGGGGTGTCTTTTTCTAAACCGAACTGTCTCTGC
TTATGGATGTAAAACTAAATTGCTCCCTTGTCAAGTACAATGGAATCATCGTGCACACGT
GACACATGTATGCAGGTCATCATGTGGAGCTCCCTGCCTTATGTGGCTTGAACATATCAT
GCTACACATTCAGCACAGAGTAAGAATTCTCGATTTGTTTCCTGTTCAACAACCCAGTGC
TCTTAATTTTATCACTTCTCTAATAAGACCTTCTGAAATAAATAATCTTTTGGAGTCTTT
CCCCAGCTCTCTATCATGCATTTGCAATAGAATGACAGTGGAATAAATTTACAGTATTGA
GTTGATATAGATTTTATGAACAGTGCTTTGATATTATGCCAAAGGGAAAACTGTCCCAAT
TAAACTAGATTAAATAGGGTGGCTAAAAAAAAAATAAAATAAAAACACTGGAAATTACTT
TTCTCACTTTCTCTTGATGCAATGAAGGGAATATGACACTACAGTATACGGTGTTGTCAG
TGTTATATGATGCACAAAATATTTGGATTATTTGAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               3-996, gnl|bosTau2|chr28 (10658067-10657092)
               

               
               3-996, gnl|Hg17|chr10 (60260007-60260985)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-996, gnl|bosTau2|chr28 (10658067-10657092)
               

               
               3-996, gnl|Hg17|chr10 (60260007-60260985)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               ton (0.1755)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               kid (0.129735)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               kid (0.129735)

	3-996, gnl\|bosTau2\|chr28 (10658067-10657092)
	3-996, gnl\|Hg17\|chr10 (60260007-60260985)

	ton (0.1755)
	mga (0.160205)
	ski (0.146735)
	lin (0.145603)
	ste (0.135208)
	kid (0.129735)