Ss1.1-Pig4-TMW8058K02.3
|
GGCAGCTGTCAAGAGTCCACTTTATTAGCACGTGGTAGCGTTTACACAGCTCGAGGGGGA
GACAGGCCACCGTTGAATAGACCCCACTCAGGCAGGGTCTCTGAGGGAGGCTGTGAGCCT
GGCTTCTACCCCCCGGTGGCCCTTGCCCCTAGGAGGGTCCTGCAGAAGAGCAGCCACATC
TGGGGAGCCTGGACCTGCTGGCTGCTCCATTCCCAGCAGGGGAAAGACCCCCCCCCACCT
AAATGCCGACACAAGAGGAAGAGCAGAGGGAATGAGCCTTAGGGTCAGAGGAGTAGGCGC
CCCAGAAGCAGAGCTGGTTCCAGAGGCCTGGCTGGCCTGCTGAGCTGCGCTGGCTACTCC
CACTGCTGTGGACTAGGGGCTGCAGCGGGGCGGGCCCGCACCCAGCTCAGCATCTGGCCC
GCAGACAAGATGCTGACAGGCAGGCTTTAGCATCTGGCTTTTATTGGGTGCTTGTTTTCT
CAAGCCCAGCATTAAAAAAAAGTCACCTGAGGTGGTAGTTCGGTTGTGGGTGGAAGTGGG
GGTGGGCCATTGGTCAGGAGGAGCGCCAGCGTGCTGGGGGAGGTCCTTCACATGTAGTAC
CAGGCCAAGAGGCTGGCAGCCAGGGCCACGCTGGCCGCCAGAAGGAACTGGAGGCTGGGC
TTGCTCAGCACAGCCAGGGCTGTTTGGAAGGGGCAGCTGCTGCCCTCCAGGGCACCTTTG
TCTTGTTCGCCAGAGTAGTAGGGGCACTTGCGCACATCTCCTTTCCCATCGTGCACGGGG
AGCCCGTCGGCCAGCGTCTCTTTGGCCAGCAAGGAGCCAGCCTGGTCCAGTTCATTAAAT
ACCTGCATGTTGTACTCGAAGGCCTTGTTGGCCTCCTCCACGATCTTCTCTTTGGTCTCC
AGGTTCAGGTCCAGGGCGTTCATCCTGGCCCGATAGAACTGCTTGAACTGCTGCGCGTTG
TCCACGTTCTCAAACAGGTAGAACTGGGTCCCTTCCCCTGTGCTGGGGAGTTTCAGGGCC
CGCTGGGCCACCTTCTTCAGCACCTGGCCCCCCGAGAGGTCCCCCATGTAGCGGGTGTAG
GCGTGGGCCACCAGCAGCTCTGGCTCATTCTGCCCCACGTAGTGGATCCGCTCCACATAC
TTGCGGGTGGCCTCAGAGCACTGCGCCTGCTCCTCCCAGTCCCCACCGTAGAAATACTCC
ATGTCCTTGACCAGCGCCTCCTTGCGGTGCAGCTCGGTGGGGAAGTACAGGGGGGCGAAG
GCTGGGTGGTCCTTGTTGCGGTCCATCTCCTCCTCCAGCGCCGAATAGGTGAAGTACAGC
GCGGTAGTGGCCAGCTTGAACAGCTCCTTCCTGATGTTGCCTTTCAAGAAGTCCTTGACG
AACTGTGTGCTTTCTGCCCGGTCATGTGCTTCCTTGGTCCCCTCTTTCAGGAGCTCGGAG
AGGTCCGCCATCCTGGTGTGGTTTTCTTTCTCTGGGGCCCCAGAGCTCTTTTCCTCCGGC
TCATCCACCCCCTCTGAGGTCTCCAGTTCCACTGACATCGCTGCCAAGTGTGGTTCTCGC
AGCTCTCACCCCTCTGGGCCGGCCGCGGGGCCGCCTCGCAGTCAGCCTGCACCGCGTCCG |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCAGCTGTCAAGAGTCCACTTTATTAGCACGTGGTAGCGTTTACACAGCTCGAGGGGGA
GACAGGCCACCGTTGAATAGACCCCACTCAGGCAGGGTCTCTGAGGGAGGCTGTGAGCCT
GGCTTCTACCCCCCGGTGGCCCTTGCCCCTAGGAGGGTCCTGCAGAAGAGCAGCCACATC
TGGGGAGCCTGGACCTGCTGGCTGCTCCATTCCCAGCAGGGGAAAGACCCCCCCCCACCT
AAATGCCGACACAAGAGGAAGAGCAGAGGGAATGAGCCTTAGGGTCAGAGGAGTAGGCGC
CCCAGAAGCAGAGCTGGTTCCAGAGGCCTGGCTGGCCTGCTGAGCTGCGCTGGCTACTCC
CACTGCTGTGGACTAGGGGCTGCAGCGGGGCGGGCCCGCACCCAGCTCAGCATCTGGCCC
GCAGACAAGATGCTGACAGGCAGGCTTTAGCATCTGGCTTTTATTGGGTGCTTGTTTTCT
CAAGCCCAGCATTAAAAAAAAGTCACCTGAGGTGGTAGTTCGGTTGTGGGTGGAAGTGGG
GGTGGGCCATTGGTCAGGAGGAGCGCCAGCGTGCTGGGGGAGGTCCTTCACATGTAGTAC
CAGGCCAAGAGGCTGGCAGCCAGGGCCACGCTGGCCGCCAGAAGGAACTGGAGGCTGGGC
TTGCTCAGCACAGCCAGGGCTGTTTGGAAGGGGCAGCTGCTGCCCTCCAGGGCACCTTTG
TCTTGTTCGCCAGAGTAGTAGGGGCACTTGCGCACATCTCCTTTCCCATCGTGCACGGGG
AGCCCGTCGGCCAGCGTCTCTTTGGCCAGCAAGGAGCCAGCCTGGTCCAGTTCATTAAAT
ACCTGCATGTTGTACTCGAAGGCCTTGTTGGCCTCCTCCACGATCTTCTCTTTGGTCTCC
AGGTTCAGGTCCAGGGCGTTCATCCTGGCCCGATAGAACTGCTTGAACTGCTGCGCGTTG
TCCACGTTCTCAAACAGGTAGAACTGGGTCCCTTCCCCTGTGCTGGGGAGTTTCAGGGCC
CGCTGGGCCACCTTCTTCAGCACCTGGCCCCCCGAGAGGTCCCCCATGTAGCGGGTGTAG
GCGTGGGCCACCAGCAGCTCTGGCTCATTCTGCCCCACGTAGTGGATCCGCTCCACATAC
TTGCGGGTGGCCTCAGAGCACTGCGCCTGCTCCTCCCAGTCCCCACCGTAGAAATACTCC
ATGTCCTTGACCAGCGCCTCCTTGCGGTGCAGCTCGGTGGGGAAGTACAGGGGGGCGAAG
GCTGGGTGGTCCTTGTTGCGGTCCATCTCCTCCTCCAGCGCCGAATAGGTGAAGTACAGC
GCGGTAGTGGCCAGCTTGAACAGCTCCTTCCTGATGTTGCCTTTCAAGAAGTCCTTGACG
AACTGTGTGCTTTCTGCCCGGTCATGTGCTTCCTTGGTCCCCTCTTTCAGGAGCTCGGAG
AGGTCCGCCATCCTGGTGTGGTTTTCTTTCTCTGGGGCCCCAGAGCTCTTTTCCTCCGGC
TCATCCACCCCCTCTGAGGTCTCCAGTTCCACTGACATCGCTGCCAAGTGTGGTTCTCGC
AGCTCTCACCCCTCTGGGCCGGCCGCGGGGCCGCCTCGCAGTCAGCCTGCACCGCGTCCG |
|
gi|37700455|gb|AAR00247.1| |
Protein identifier
|
gi|37700455|gb|AAR00247.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
472-409, , RaveNnA Score=13.88 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
472-409, , RaveNnA Score=13.88 |
Human gene identifier and UTR site,
human gene reading direction
|
174-717, gnl|bosTau2|chr25 (4473629-4473103) |
|
174-717, gnl|Hg17|chr16 (4500130-4499629) |
| |
|
183-501, gnl|bosTau2|chr17 (38742856-38743173) |
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183-501, gnl|Hg17|chr16 (4500126-4499860) |
| |
|
840-1336, gnl|bosTau2|chr25 (4472076-4471580) |
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840-1336, gnl|canFam2|chr6 (39925243-39924738) |
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840-1336, gnl|danRer3|chr22 (29480443-29479944) |
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840-1336, gnl|dasNov1|scaffold_11386 (36602-37107) |
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840-1336, gnl|echTel1|scaffold_313279 (40230-39740) |
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840-1336, gnl|fr1|chrUn (108227846-108228343) |
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840-1336, gnl|galGal2|chr14 (14271590-14271086) |
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840-1336, gnl|hg17|chr16 (4497709-4498213) |
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840-1336, gnl|Hg17|chr16 (4498209-4497713) |
|
840-1336, gnl|loxAfr1|scaffold_11661 (11029-10525) |
|
840-1336, gnl|mm7|chr16 (4437446-4437950) |
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840-1336, gnl|Mm7|chr16 (4437946-4437450) |
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840-1336, gnl|monDom2|scaffold_17 (43230458-43229954) |
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840-1336, gnl|oryCun1|scaffold_60424 (150-654) |
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840-1336, gnl|panTro1|chr18 (4433734-4434238) |
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840-1336, gnl|rheMac2|chr20 (4675255-4675759) |
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840-1336, gnl|rn3|chr10 (10916367-10915863) |
|
840-1336, gnl|tetNig1|chr3 (9864773-9864276) |
|
840-1336, gnl|xenTro1|scaffold_592 (362734-363238) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
174-717, gnl|bosTau2|chr25 (4473629-4473103) |
|
174-717, gnl|Hg17|chr16 (4500130-4499629) |
| |
|
183-501, gnl|bosTau2|chr17 (38742856-38743173) |
|
183-501, gnl|Hg17|chr16 (4500126-4499860) |
| |
|
840-1336, gnl|bosTau2|chr25 (4472076-4471580) |
|
840-1336, gnl|canFam2|chr6 (39925243-39924738) |
|
840-1336, gnl|danRer3|chr22 (29480443-29479944) |
|
840-1336, gnl|dasNov1|scaffold_11386 (36602-37107) |
|
840-1336, gnl|echTel1|scaffold_313279 (40230-39740) |
|
840-1336, gnl|fr1|chrUn (108227846-108228343) |
|
840-1336, gnl|galGal2|chr14 (14271590-14271086) |
|
840-1336, gnl|hg17|chr16 (4497709-4498213) |
|
840-1336, gnl|Hg17|chr16 (4498209-4497713) |
|
840-1336, gnl|loxAfr1|scaffold_11661 (11029-10525) |
|
840-1336, gnl|mm7|chr16 (4437446-4437950) |
|
840-1336, gnl|Mm7|chr16 (4437946-4437450) |
|
840-1336, gnl|monDom2|scaffold_17 (43230458-43229954) |
|
840-1336, gnl|oryCun1|scaffold_60424 (150-654) |
|
840-1336, gnl|panTro1|chr18 (4433734-4434238) |
|
840-1336, gnl|rheMac2|chr20 (4675255-4675759) |
|
840-1336, gnl|rn3|chr10 (10916367-10915863) |
|
840-1336, gnl|tetNig1|chr3 (9864773-9864276) |
|
840-1336, gnl|xenTro1|scaffold_592 (362734-363238) |
|
ute (0.398353) |
|
cli (0.305623) |
|
hyp (0.285673) |
|
pla (0.267344) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fty (0.17584) |
|
ill (0.175593) |
|
nje (0.16592) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
eep (0.122564) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ute (0.398353) |
|
cli (0.305623) |
|
hyp (0.285673) |
|
pla (0.267344) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fty (0.17584) |
|
ill (0.175593) |
|
nje (0.16592) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
eep (0.122564) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
med (0.116252) |
