Non-Coding RNA Search

Ss1.1-Pig4-TMW8058K08.3

Sequence:


               
               AAAGAGCAGGTTTAGGTTTTTACATTATTTACGTACATGAGAGAAGAGAGGCTATGGAAT
TAGCTGGAAGGGCCCCTGGGGGAGTGTTCTACTGTGAATGGAGAATGCTAGGGTGTTGGC
CATCCTGGTCCTGGAATCCCTTACATCTTCGCTCCGCAGCATGAAGCCTACCTTCTGAGC
CTGACTTGCTGGTAGCTGGTACTGTGGTTCCTCACAGCCTCAGCACGTCAGTCGTCTCTG
TTGACATTGGCATTGAAGATACAAATGGGGAGCGTGCAGGTTGGTTCATACATTTTCTGT
ACAGCTGCATCCTTAGGGGGAGATTTTTTTCCTTCCCTTCTATGATGCTCATGTGACTGG
AAGACTTGGCCTGTGTGTTCCAGCCTTCTCTTTCATTTTTGCCTCCTCTCGCGGAGCAGG
AAATATGTAAGCACACTTTGTGACTTGCTAAAATCTTGAGGTTTGAATTTCTTTTCAGCT
GTGTTTTTGAAAAGATGAGGGTTTTGGAATGAGGCGTTTTTTGAAATGTACCAGCGTGGA
TCTTTGGAAAACTGGGTGTAAAACCATTTAGGGTAAGTTTTCTTATTGGTGATCCGTGAC
ATACAGAGGAAATCCTTTACCTCCGGTAATAAGCCATTCAGCCTAAATTCTATTCTGTGA
ATACATCTATCTCAGCTCATGGTAAATGTGGCTCGTCCCGCCCAAACCCTAGGGAAAGGG
GTGTGTGTAAAGCCACGGCACCGGGCCGGGCGCCGTTCATTAACACGGTTACGGAGAAGA
GCTGAGCGTTTCCAAGGTCTTATTTCCTTCTCAGAATGCTTTAAGTGTTGATTACATACG
CTGGGTCTCTGGAGAAGTTTTTCTTTGTTACAACACTGCTGCTTTGAGCAATTCTGTTTT
TCCTCATTGTCCTTTAGGGAGATCACCAGCTTTGGCATCTTAACAACAAACGGTGGACGG
GGGATTTTCTTCCTAATATGCATCTTTAGAATCAAGTACACCTCTTCCCTGTTATTCCTT
ATAACCAAAGAACATACCTTATGGAAATTGTATCATAATATCTGGAAACAACATTTTCCT
CTGAGAGGTGACTTTTGTACAAAAAAAAAAAAAAAAAAAAATCCTCACCTTTCCTGTTTT
TTTGTTGATTGTGGCTGTACATGTAGTGGTCTTTACAGTCATTAAAGGAACCTACTGACA
AACGCAAGTGTGATCATCTCGTTCAAACGTTTGTTGTTACGATGCGCATGGATATGAGTT
TAAACAGAAGCCGGATCCGTCATCCTGCACTTTCTGAATTCTGTTTCAGTATTTGTGTTG
AAGTAGACCTAGTTTGAACTCATGCGAAATCCCGGAGTTTTGCTGTCAGCAGCTTTGTCG
TTGGGGAAACAAAGAAACCAAAGCTGAATATTTAAAAGAATGACTGGATGGAAATCCTTG
CTCTCAAAAAAAGACACTCATCAAAGTGTAGTTTTTCTCAGTGTTCTAATTTTTTTAAAT
GTTCGTCTGCATATTTGCATCAGCTATTTCTTTATGTGCAAAATGTATGTTTCACCTTAA
AAATGCCTACAAGTTAGTCAGTAGCTACTTTTGTTTAATCTATACACGATGATTAAGTGC
ATTTAATATTGGTAATTTAATGAAAAGCATTCCTTGCCCAATGGATGTATACATTTTTGA
AAGAATAAGCAGAATTATATAATATGAAATGCTATGTAAAGTTTTCTATGTAAAAATATT
ATGTATAATACTGTTAAAATAAATATCCCATGCTTTAATCAGGTGTTAAATCAATAAAGT
TTTAAAAAGTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAGCAGGTTTAGGTTTTTACATTATTTACGTACATGAGAGAAGAGAGGCTATGGAAT
TAGCTGGAAGGGCCCCTGGGGGAGTGTTCTACTGTGAATGGAGAATGCTAGGGTGTTGGC
CATCCTGGTCCTGGAATCCCTTACATCTTCGCTCCGCAGCATGAAGCCTACCTTCTGAGC
CTGACTTGCTGGTAGCTGGTACTGTGGTTCCTCACAGCCTCAGCACGTCAGTCGTCTCTG
TTGACATTGGCATTGAAGATACAAATGGGGAGCGTGCAGGTTGGTTCATACATTTTCTGT
ACAGCTGCATCCTTAGGGGGAGATTTTTTTCCTTCCCTTCTATGATGCTCATGTGACTGG
AAGACTTGGCCTGTGTGTTCCAGCCTTCTCTTTCATTTTTGCCTCCTCTCGCGGAGCAGG
AAATATGTAAGCACACTTTGTGACTTGCTAAAATCTTGAGGTTTGAATTTCTTTTCAGCT
GTGTTTTTGAAAAGATGAGGGTTTTGGAATGAGGCGTTTTTTGAAATGTACCAGCGTGGA
TCTTTGGAAAACTGGGTGTAAAACCATTTAGGGTAAGTTTTCTTATTGGTGATCCGTGAC
ATACAGAGGAAATCCTTTACCTCCGGTAATAAGCCATTCAGCCTAAATTCTATTCTGTGA
ATACATCTATCTCAGCTCATGGTAAATGTGGCTCGTCCCGCCCAAACCCTAGGGAAAGGG
GTGTGTGTAAAGCCACGGCACCGGGCCGGGCGCCGTTCATTAACACGGTTACGGAGAAGA
GCTGAGCGTTTCCAAGGTCTTATTTCCTTCTCAGAATGCTTTAAGTGTTGATTACATACG
CTGGGTCTCTGGAGAAGTTTTTCTTTGTTACAACACTGCTGCTTTGAGCAATTCTGTTTT
TCCTCATTGTCCTTTAGGGAGATCACCAGCTTTGGCATCTTAACAACAAACGGTGGACGG
GGGATTTTCTTCCTAATATGCATCTTTAGAATCAAGTACACCTCTTCCCTGTTATTCCTT
ATAACCAAAGAACATACCTTATGGAAATTGTATCATAATATCTGGAAACAACATTTTCCT
CTGAGAGGTGACTTTTGTACAAAAAAAAAAAAAAAAAAAAATCCTCACCTTTCCTGTTTT
TTTGTTGATTGTGGCTGTACATGTAGTGGTCTTTACAGTCATTAAAGGAACCTACTGACA
AACGCAAGTGTGATCATCTCGTTCAAACGTTTGTTGTTACGATGCGCATGGATATGAGTT
TAAACAGAAGCCGGATCCGTCATCCTGCACTTTCTGAATTCTGTTTCAGTATTTGTGTTG
AAGTAGACCTAGTTTGAACTCATGCGAAATCCCGGAGTTTTGCTGTCAGCAGCTTTGTCG
TTGGGGAAACAAAGAAACCAAAGCTGAATATTTAAAAGAATGACTGGATGGAAATCCTTG
CTCTCAAAAAAAGACACTCATCAAAGTGTAGTTTTTCTCAGTGTTCTAATTTTTTTAAAT
GTTCGTCTGCATATTTGCATCAGCTATTTCTTTATGTGCAAAATGTATGTTTCACCTTAA
AAATGCCTACAAGTTAGTCAGTAGCTACTTTTGTTTAATCTATACACGATGATTAAGTGC
ATTTAATATTGGTAATTTAATGAAAAGCATTCCTTGCCCAATGGATGTATACATTTTTGA
AAGAATAAGCAGAATTATATAATATGAAATGCTATGTAAAGTTTTCTATGTAAAAATATT
ATGTATAATACTGTTAAAATAAATATCCCATGCTTTAATCAGGTGTTAAATCAATAAAGT
TTTAAAAAGTAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               351-1814, gnl|bosTau2|chr13 (57439617-57441078)
               

               
               351-1814, gnl|Hg17|chr20 (47085181-47086640)
               

               
               351-1814, gnl|Mm7|chr2 (166637299-166638707)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               351-1814, gnl|bosTau2|chr13 (57439617-57441078)
               

               
               351-1814, gnl|Hg17|chr20 (47085181-47086640)
               

               
               351-1814, gnl|Mm7|chr2 (166637299-166638707)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               lyg (0.665513)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               fat (0.294855)
               

               
               ova (0.258264)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.665513)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               fat (0.294855)
               

               
               ova (0.258264)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	351-1814, gnl\|bosTau2\|chr13 (57439617-57441078)
	351-1814, gnl\|Hg17\|chr20 (47085181-47086640)
	351-1814, gnl\|Mm7\|chr2 (166637299-166638707)

	lyg (0.665513)
	pro (0.512033)
	tra (0.492368)
	mgp (0.461361)
	ret (0.3862)
	sag (0.36543)
	gul (0.355177)
	sin (0.349895)
	spc (0.340097)
	fat (0.294855)
	ova (0.258264)
	mga (0.160205)
	tbr (0.154178)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	pgl (0.118483)
	cbl (0.114797)
	ldo (0.0970026)