Ss1.1-Pig4-TMW8058K10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAATAAGCTCTTGTGACCTCCTGGTTGTAAGTGTTGGCCAGATGTCCATGTCCAGGGCCA TTAACCTAACCCAGAAACTCTGGTCAGCGGGAATCACAGCAGAAATTATGTATGACTGGT CACAGTCCCAAGAGGAGTTACAGGAGTACTGCAGACATCATGAAATCACCTATGTGGCCC TTGTGTCAGATAAAGAAGGAAGCCATGTCAAGGTTAAGTCTTTTGAGAAAGAAAGACAAA CAGAGAAACGTGTGCTGGAGTCCGATCTGGTGGACCATGTTTTGCAGAAGCTGAGAACTA AAGTCAGTGATGAGAGGACTATCAGAGAAGGTTCCGATAATCTTGCAGTACAAAGTCTGA AGGGGTCATTTTCTAATGCTTCAGGTTTGTTTGAAATCCATGGAGCAACAGTTGTTCCCA TTGTGAGCGTGGTAGCCCCAGAGAAGCTGTCAGCCAGCACTAGGAGGCGATATGAAACCC AGGTACAAACTCGACTTCAGACCTCCCTTGCCAACTTACATCAGAAAAGCAGTGAAATTG AAATTTTGGCTGTGGATCTACCCAAGGAAACAATCTTACAGTTTTTATCATTAGAGTGGG ATGCTGATGAACAGGCATTTAACACAACTGTGAAGCAGCTGTTGTCACGCCTGCCAAAGC AAAGATACCTCAAATTAGTCTGTGATGAAATTTATAACATCAAAGTAGAAAAAAAGGTGT CTGTGCTATTCCTGTATAGCTACAGAGATGATTACTACAGAATCTTATTTTAATCCTAAA GAACAATCATTACATTGTTCAAATGGACAGGAGCTTATACTATAAAATGCTGTACATTCA CTGTAATTTTAAATTAATATTCTAAGAAGCTGTCCTACAAAGTTGAGCTTTGTAAGTTTT TCATGTATATTATAAATTTATCTTTTTGAATATAATAAATGTTTTCATATAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAATAAGCTCTTGTGACCTCCTGGTTGTAAGTGTTGGCCAGATGTCCATGTCCAGGGCCA TTAACCTAACCCAGAAACTCTGGTCAGCGGGAATCACAGCAGAAATTATGTATGACTGGT CACAGTCCCAAGAGGAGTTACAGGAGTACTGCAGACATCATGAAATCACCTATGTGGCCC TTGTGTCAGATAAAGAAGGAAGCCATGTCAAGGTTAAGTCTTTTGAGAAAGAAAGACAAA CAGAGAAACGTGTGCTGGAGTCCGATCTGGTGGACCATGTTTTGCAGAAGCTGAGAACTA AAGTCAGTGATGAGAGGACTATCAGAGAAGGTTCCGATAATCTTGCAGTACAAAGTCTGA AGGGGTCATTTTCTAATGCTTCAGGTTTGTTTGAAATCCATGGAGCAACAGTTGTTCCCA TTGTGAGCGTGGTAGCCCCAGAGAAGCTGTCAGCCAGCACTAGGAGGCGATATGAAACCC AGGTACAAACTCGACTTCAGACCTCCCTTGCCAACTTACATCAGAAAAGCAGTGAAATTG AAATTTTGGCTGTGGATCTACCCAAGGAAACAATCTTACAGTTTTTATCATTAGAGTGGG ATGCTGATGAACAGGCATTTAACACAACTGTGAAGCAGCTGTTGTCACGCCTGCCAAAGC AAAGATACCTCAAATTAGTCTGTGATGAAATTTATAACATCAAAGTAGAAAAAAAGGTGT CTGTGCTATTCCTGTATAGCTACAGAGATGATTACTACAGAATCTTATTTTAATCCTAAA GAACAATCATTACATTGTTCAAATGGACAGGAGCTTATACTATAAAATGCTGTACATTCA CTGTAATTTTAAATTAATATTCTAAGAAGCTGTCCTACAAAGTTGAGCTTTGTAAGTTTT TCATGTATATTATAAATTTATCTTTTTGAATATAATAAATGTTTTCATATAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 4-125, - strand, RNAz p=0.818224 | |
| 795-905, + strand, RNAz p=0.955329 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 4-125, - strand, RNAz p=0.818224 | |
| 795-905, + strand, RNAz p=0.955329 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 4-125, gnl|bosTau2|chr10 (23266965-23266844) | |
| 4-125, gnl|canFam2|chr30 (10219343-10219491) | |
| 4-125, gnl|dasNov1|scaffold_1055 (97987-97839) | |
| 4-125, gnl|echTel1|scaffold_308998 (13164-13016) | |
| 4-125, gnl|fr1|chrUn (81632382-81632234) | |
| 4-125, gnl|galGal2|chr5 (26375048-26374901) | |
| 4-125, gnl|hg17|chr15 (38100377-38100525) | |
| 4-125, gnl|Hg17|chr15 (38100399-38100520) | |
| 4-125, gnl|loxAfr1|scaffold_2762 (47828-47680) | |
| 4-125, gnl|mm7|chr2 (118204781-118204928) | |
| 4-125, gnl|Mm7|chr2 (118204802-118204923) | |
| 4-125, gnl|monDom2|scaffold_12 (2716517-2716369) | |
| 4-125, gnl|oryCun1|scaffold_201218 (158259-158111) | |
| 4-125, gnl|panTro1|chr16 (37984427-37984575) | |
| 4-125, gnl|rheMac2|chr7 (18370977-18371125) | |
| 4-125, gnl|rn3|chr3 (104789565-104789712) | |
| 4-125, gnl|xenTro1|scaffold_218 (108342-108217) | |
| 210-332, gnl|bosTau2|chr10 (23259285-23259163) | |
| 210-332, gnl|canFam2|chr30 (10227316-10227460) | |
| 210-332, gnl|danRer3|chr17 (25300248-25300371) | |
| 210-332, gnl|dasNov1|scaffold_1055 (85793-85639) | |
| 210-332, gnl|echTel1|scaffold_308998 (9134-9001) | |
| 210-332, gnl|galGal2|chr5 (26373352-26373216) | |
| 210-332, gnl|hg17|chr15 (38105454-38105607) | |
| 210-332, gnl|Hg17|chr15 (38105467-38105589) | |
| 210-332, gnl|loxAfr1|scaffold_2762 (40323-40170) | |
| 210-332, gnl|mm7|chr2 (118208995-118209141) | |
| 210-332, gnl|Mm7|chr2 (118209008-118209130) | |
| 210-332, gnl|monDom2|scaffold_12 (2710506-2710350) | |
| 210-332, gnl|oryCun1|scaffold_201218 (152196-152043) | |
| 210-332, gnl|panTro1|chr16 (37989524-37989677) | |
| 210-332, gnl|rheMac2|chr7 (18377619-18377772) | |
| 210-332, gnl|rn3|chr3 (104795506-104795652) | |
| 210-332, gnl|tetNig1|chr10 (4035582-4035438) | |
| 210-332, gnl|xenTro1|scaffold_218 (106934-106803) | |
| 377-487, gnl|bosTau2|chr10 (23255342-23255232) | |
| 377-487, gnl|canFam2|chr30 (10231720-10231831) | |
| 377-487, gnl|danRer3|chr17 (25301230-25301326) | |
| 377-487, gnl|dasNov1|scaffold_1055 (82402-82290) | |
| 377-487, gnl|echTel1|scaffold_308998 (5185-5071) | |
| 377-487, gnl|fr1|chrUn (81628552-81628439) | |
| 377-487, gnl|galGal2|chr5 (26371094-26370982) | |
| 377-487, gnl|hg17|chr15 (38109839-38109953) | |
| 377-487, gnl|Hg17|chr15 (38109840-38109954) | |
| 377-487, gnl|loxAfr1|scaffold_2762 (35440-35326) | |
| 377-487, gnl|mm7|chr2 (118211674-118211786) | |
| 377-487, gnl|Mm7|chr2 (118211675-118211787) | |
| 377-487, gnl|monDom2|scaffold_12 (2708465-2708353) | |
| 377-487, gnl|oryCun1|scaffold_201218 (146322-146216) | |
| 377-487, gnl|panTro1|chr16 (37993921-37994035) | |
| 377-487, gnl|rheMac2|chr7 (18381660-18381772) | |
| 377-487, gnl|rn3|chr3 (104798238-104798348) | |
| 377-487, gnl|tetNig1|chr10 (4035066-4034952) | |
| 716-951, gnl|bosTau2|chr10 (23251261-23251026) | |
| 716-951, gnl|Mm7|chr2 (118215852-118216083) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-125, gnl|bosTau2|chr10 (23266965-23266844) | |
| 4-125, gnl|canFam2|chr30 (10219343-10219491) | |
| 4-125, gnl|dasNov1|scaffold_1055 (97987-97839) | |
| 4-125, gnl|echTel1|scaffold_308998 (13164-13016) | |
| 4-125, gnl|fr1|chrUn (81632382-81632234) | |
| 4-125, gnl|galGal2|chr5 (26375048-26374901) | |
| 4-125, gnl|hg17|chr15 (38100377-38100525) | |
| 4-125, gnl|Hg17|chr15 (38100399-38100520) | |
| 4-125, gnl|loxAfr1|scaffold_2762 (47828-47680) | |
| 4-125, gnl|mm7|chr2 (118204781-118204928) | |
| 4-125, gnl|Mm7|chr2 (118204802-118204923) | |
| 4-125, gnl|monDom2|scaffold_12 (2716517-2716369) | |
| 4-125, gnl|oryCun1|scaffold_201218 (158259-158111) | |
| 4-125, gnl|panTro1|chr16 (37984427-37984575) | |
| 4-125, gnl|rheMac2|chr7 (18370977-18371125) | |
| 4-125, gnl|rn3|chr3 (104789565-104789712) | |
| 4-125, gnl|xenTro1|scaffold_218 (108342-108217) | |
| 210-332, gnl|bosTau2|chr10 (23259285-23259163) | |
| 210-332, gnl|canFam2|chr30 (10227316-10227460) | |
| 210-332, gnl|danRer3|chr17 (25300248-25300371) | |
| 210-332, gnl|dasNov1|scaffold_1055 (85793-85639) | |
| 210-332, gnl|echTel1|scaffold_308998 (9134-9001) | |
| 210-332, gnl|galGal2|chr5 (26373352-26373216) | |
| 210-332, gnl|hg17|chr15 (38105454-38105607) | |
| 210-332, gnl|Hg17|chr15 (38105467-38105589) | |
| 210-332, gnl|loxAfr1|scaffold_2762 (40323-40170) | |
| 210-332, gnl|mm7|chr2 (118208995-118209141) | |
| 210-332, gnl|Mm7|chr2 (118209008-118209130) | |
| 210-332, gnl|monDom2|scaffold_12 (2710506-2710350) | |
| 210-332, gnl|oryCun1|scaffold_201218 (152196-152043) | |
| 210-332, gnl|panTro1|chr16 (37989524-37989677) | |
| 210-332, gnl|rheMac2|chr7 (18377619-18377772) | |
| 210-332, gnl|rn3|chr3 (104795506-104795652) | |
| 210-332, gnl|tetNig1|chr10 (4035582-4035438) | |
| 210-332, gnl|xenTro1|scaffold_218 (106934-106803) | |
| 377-487, gnl|bosTau2|chr10 (23255342-23255232) | |
| 377-487, gnl|canFam2|chr30 (10231720-10231831) | |
| 377-487, gnl|danRer3|chr17 (25301230-25301326) | |
| 377-487, gnl|dasNov1|scaffold_1055 (82402-82290) | |
| 377-487, gnl|echTel1|scaffold_308998 (5185-5071) | |
| 377-487, gnl|fr1|chrUn (81628552-81628439) | |
| 377-487, gnl|galGal2|chr5 (26371094-26370982) | |
| 377-487, gnl|hg17|chr15 (38109839-38109953) | |
| 377-487, gnl|Hg17|chr15 (38109840-38109954) | |
| 377-487, gnl|loxAfr1|scaffold_2762 (35440-35326) | |
| 377-487, gnl|mm7|chr2 (118211674-118211786) | |
| 377-487, gnl|Mm7|chr2 (118211675-118211787) | |
| 377-487, gnl|monDom2|scaffold_12 (2708465-2708353) | |
| 377-487, gnl|oryCun1|scaffold_201218 (146322-146216) | |
| 377-487, gnl|panTro1|chr16 (37993921-37994035) | |
| 377-487, gnl|rheMac2|chr7 (18381660-18381772) | |
| 377-487, gnl|rn3|chr3 (104798238-104798348) | |
| 377-487, gnl|tetNig1|chr10 (4035066-4034952) | |
| 716-951, gnl|bosTau2|chr10 (23251261-23251026) | |
| 716-951, gnl|Mm7|chr2 (118215852-118216083) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| aor (0.390549) | |
| elu (0.385356) | |
| tra (0.369276) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ret (0.257467) | |
| col (0.195008) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| ute (0.132784) | |
| thg (0.126791) | |
| bla (0.124347) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.390549) | |
| elu (0.385356) | |
| tra (0.369276) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ret (0.257467) | |
| col (0.195008) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| ute (0.132784) | |
| thg (0.126791) | |
| bla (0.124347) |