Non-Coding RNA Search

Ss1.1-Pig4-TMW8058K11.3

Sequence:


               
               AGTATCAGAAGGACCACAAGAGAAGAAACAATCAGGAACATCTGAAAAAAGAATACAAGG
TTCAGAATATGAAGATCAACCACAGACTAGAAAGAGTTTTTCAACATTGTTTTTAGAAAC
TGTAAAAAGAAAAAACGAATCCAGTTCTGTTGTTAGGCATACAACTGCTCCACCTCATTT
ATCTCCTACAAATAATACGAAGTTATTAGAAGATGAATTTATAATTGATGAATCAGATAA
AAGTTTTGCCAATCAATCTTGGATTACTATACCAAGAAAGTCTGGGCCTCTGATACATGG
CACTGTATCCCCTGCTGAGAGCACTGCACTTCAGAGGAAGAAGTCAAGGGAAAAATGTGA
TAGTGTATCATCTACAGCTTTGACAAGTGACAAACATTCTAGCAAAGCTCACCCAGTAGA
GAAATCTCAGCCTTTTGAACAAAACATACTGGGTGGGAGTTGTGCTTCGACAGATGAAAT
GGAAAATAATTGTAAATCTGCAAAATATGAAATGTATTCTGAGAATGGAAAAAAATCATC
TGGAAACAAAAGGACTATAAAGCAAAAACAGGGAACACAATTTAAGGCCAATGTAGTGGA
AGAACAAGTTGATATGGAACACACTAAAGATAAAAATATAAATATATCACATATTGCCCA
AGACAAGTTACAGAGAAATTCGGGCCAAAATATGGAAGAACGTGAAGAGATAGGTGTCCA
GATTTCCAAAAAAGAGATGCCACCCATGGGAAGCAAGAGAGGTAGCACCAATATTCCTTA
TACAATGAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATCAGAAGGACCACAAGAGAAGAAACAATCAGGAACATCTGAAAAAAGAATACAAGG
TTCAGAATATGAAGATCAACCACAGACTAGAAAGAGTTTTTCAACATTGTTTTTAGAAAC
TGTAAAAAGAAAAAACGAATCCAGTTCTGTTGTTAGGCATACAACTGCTCCACCTCATTT
ATCTCCTACAAATAATACGAAGTTATTAGAAGATGAATTTATAATTGATGAATCAGATAA
AAGTTTTGCCAATCAATCTTGGATTACTATACCAAGAAAGTCTGGGCCTCTGATACATGG
CACTGTATCCCCTGCTGAGAGCACTGCACTTCAGAGGAAGAAGTCAAGGGAAAAATGTGA
TAGTGTATCATCTACAGCTTTGACAAGTGACAAACATTCTAGCAAAGCTCACCCAGTAGA
GAAATCTCAGCCTTTTGAACAAAACATACTGGGTGGGAGTTGTGCTTCGACAGATGAAAT
GGAAAATAATTGTAAATCTGCAAAATATGAAATGTATTCTGAGAATGGAAAAAAATCATC
TGGAAACAAAAGGACTATAAAGCAAAAACAGGGAACACAATTTAAGGCCAATGTAGTGGA
AGAACAAGTTGATATGGAACACACTAAAGATAAAAATATAAATATATCACATATTGCCCA
AGACAAGTTACAGAGAAATTCGGGCCAAAATATGGAAGAACGTGAAGAGATAGGTGTCCA
GATTTCCAAAAAAGAGATGCCACCCATGGGAAGCAAGAGAGGTAGCACCAATATTCCTTA
TACAATGAATAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61881141|ref|XP_598358.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61881141|ref|XP_598358.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               143-740, gnl|bosTau2|chr6 (43786274-43786874)
               

               
               143-740, gnl|Hg17|chr4 (68209173-68208567)
               

               
               143-740, gnl|Mm7|chr5 (85975039-85974445)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-740, gnl|bosTau2|chr6 (43786274-43786874)
               

               
               143-740, gnl|Hg17|chr4 (68209173-68208567)
               

               
               143-740, gnl|Mm7|chr5 (85975039-85974445)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               cty (0.10408)

	143-740, gnl\|bosTau2\|chr6 (43786274-43786874)
	143-740, gnl\|Hg17\|chr4 (68209173-68208567)
	143-740, gnl\|Mm7\|chr5 (85975039-85974445)