Non-Coding RNA Search

Ss1.1-Pig4-TMW8058K17.3.5

Sequence:


               
               TCATAGAAGTGAGGCGCGCCGGGTGTGCGGGAATAAGATGGCGGGGAAGAAGAATGTCCT
GTCGTCTCTGGCAGTTTATGCGGAAGATTCAGAGCCCGAGTCTGACGGCGAAGCTGGAGT
GGAAACGGCAGGCAGCGCGGCTGAGGAGAAAGGCGGGTTGGTATCTGAAGCCTATGGAGA
GGATGATTTTTCTCGCCTCGGGGGTGACGAAGATGGTTATGAAGAAGAAGAGGATGAGAA
CAGCAAGCAGTCGGAAGATGACGATTCAGAGACTGAAAAACCTGAGGCTGATGACCCAAA
GGATAACCCAGAAGCAGAAAAGCGAGATCCCCAGGAATTAGTGGCCTCCTTTTCTGAAAG
AGTCCGAAACATGTCACCTGATGAAATCAAGATCCCGCCGGAGCCTCCTGGCAGATGTTC
AAATCACCTCCAGGACAAGATCCAGAAGCTTTATGAGCGGAAGATAAAGGAGGGAATGGA
TATGAACTACATCATCCAGAGGAAGAAGGAGTTTCGGAACCCCAGCATCTACGAGAAGCT
CATCCAGTTCTGTGCGATTGACGAGCTTGGCACCAACTACCCAAAGGACATGTTTGACCC
CCACGGCTGGTCTGAAGACTCCTACTATGAGGCATTAGCCAAAGCCCAGAAGATTGAAAT
GGACAAACTGGAAAAGGCCAAAAAGGAGCGAACCAAAATTGAGTTCGTGACGGGCACCAA
GAAAGGCACCACGACCAACGCCACAGCCACCACCACCACCACGGCCAGCACGGCTGTTGC
AGACGCCCAGAAGAGGAAGAGCAAGTGGGACTCGGCCATCCCAGTGACGACGATAGCGCA
GCCCACCATCCTCACCACCACGGCCACCCTGCCGGCTGTCGTCACGGTGACCACCAGTGC
CAGCGGCTCCAAGACCACTGTCATCTCTGCCGTGGGCACCATCGTGAAGAAGGCCAAGCA
GTGACGGAGGGACCCGCTTGGGGTGGCTCGGACACTCTCCCTCCGTCGAGGGCAGGAGCC
ACTCCAGGACTTGACAGGACTGGTGACTGGTGCCCGCCGGGAGGTGCTGCTGAATATGTC
GGGACTGGGACGCGCTCCCCCGATGCCCCCGGCGTGGCGTTCCAGATGGAAGAGGCGTTG
CTGCGGAGTTGTGGGGCTCTGAGGACGGTGTCCCACACCCCGCGGGGTCTGCCGCCCCAT
TAAAAGGGCCGCGCCCTCACCCCTCGGCCTCTCGGGTGCAGCGGCCTCTTCTGCAGTCTG
TTTTGGGGCAGATGTGAAAGCTCACGCATCCCCCCATCTTCCCGGCTGGGTTGTCACCTC
AGGGTTGGCAGTGGGGTGACAAAGCCTGGGGTTCTGCTCAGAGCACTGGGGTCACTCCCA
GCGCACACCTCTTGGCGTGGGCAGAGGGGGGTCCAGGGACTGGGAGGACCCCGCGTTCCC
GCTGCCTGCCACCCTGATGCACAAACCCAGCCAGTTCTCAGGCAGGAAGGAATCGGGGCC
TCTGCTCCCTGGGGGCGGTTGAGCCCGCCTAGGGCCCCTCCTCGGACATACCGTGGCCTT
AGAGGTCAAGCCGGTTGCCAGAAGGGCTGGGGTTGATCCCCAACCCACGCAGGGAGGTTG
GCGCCTGGCCAGAGGGCTCCGCGGGAGATGAATCACCTCCCGGCCGGCTGGGCGGCGCTC
GCTGTTTACAGGAGGCCGGCTCCCGGGAGGACCCTGCACCCCGCCCTTCCTGCGCCTGTT
ATCTCTGCCCCACAGCAGCCCTGGGCAGCGCCGGGGCCCGCTGGGCTCCTCTTAGGGCCA
AAACAGATTTCCCAGCCCCTGCCAGCCAGTCCGGGTCCGGGGGAAACCGTTTGCCTTTCC
TGCTTTTTGGCAGCTCTCCCCCCAGCGGATGCGCTGCGTGTCCGCAGAGGAAGCCGGGCT
GTGAAGGGCCGGACTGCTTCCCTGGGGTGAGGGGGCATTCAGAAAGCAGGACCCGAGGCT
GCTGCGTGACCAGAGAGCGTGCTGACCTGCCCTGCGGTCCCCAAGAGAGAAATCAAGTCA
CACTTGCCTCCAGCCCACAAGCACACACTTGGCATCAAAAGAGATGGGCTCTCTCCCTCC
CCACCTCGGAGGAGCCTTTGCAGCCCTGGAGAGAGGGGCCGCTGCCCCGAGCTCCCAGGG
CTTCCTGCCCGGCCACCCCAGCAGGGGCCCATCTCCTTCCACAAGGGCCTGTGGAGCTTG
AGTGGGAGGCAGCGTGGGGCAGGGGGCACAGCAGGAACAGAGCCAGCATCCCTGCTCTGG
ATCCCAGTTGAAGACAAGTTGTGTCTGGAGTCCTGTGGGTTATGGGCCCCTCCCTCCGTA
AAGCCTTCTCTGTCAGATCACGGCAATAAAGCTTCTTAAGGTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATAGAAGTGAGGCGCGCCGGGTGTGCGGGAATAAGATGGCGGGGAAGAAGAATGTCCT
GTCGTCTCTGGCAGTTTATGCGGAAGATTCAGAGCCCGAGTCTGACGGCGAAGCTGGAGT
GGAAACGGCAGGCAGCGCGGCTGAGGAGAAAGGCGGGTTGGTATCTGAAGCCTATGGAGA
GGATGATTTTTCTCGCCTCGGGGGTGACGAAGATGGTTATGAAGAAGAAGAGGATGAGAA
CAGCAAGCAGTCGGAAGATGACGATTCAGAGACTGAAAAACCTGAGGCTGATGACCCAAA
GGATAACCCAGAAGCAGAAAAGCGAGATCCCCAGGAATTAGTGGCCTCCTTTTCTGAAAG
AGTCCGAAACATGTCACCTGATGAAATCAAGATCCCGCCGGAGCCTCCTGGCAGATGTTC
AAATCACCTCCAGGACAAGATCCAGAAGCTTTATGAGCGGAAGATAAAGGAGGGAATGGA
TATGAACTACATCATCCAGAGGAAGAAGGAGTTTCGGAACCCCAGCATCTACGAGAAGCT
CATCCAGTTCTGTGCGATTGACGAGCTTGGCACCAACTACCCAAAGGACATGTTTGACCC
CCACGGCTGGTCTGAAGACTCCTACTATGAGGCATTAGCCAAAGCCCAGAAGATTGAAAT
GGACAAACTGGAAAAGGCCAAAAAGGAGCGAACCAAAATTGAGTTCGTGACGGGCACCAA
GAAAGGCACCACGACCAACGCCACAGCCACCACCACCACCACGGCCAGCACGGCTGTTGC
AGACGCCCAGAAGAGGAAGAGCAAGTGGGACTCGGCCATCCCAGTGACGACGATAGCGCA
GCCCACCATCCTCACCACCACGGCCACCCTGCCGGCTGTCGTCACGGTGACCACCAGTGC
CAGCGGCTCCAAGACCACTGTCATCTCTGCCGTGGGCACCATCGTGAAGAAGGCCAAGCA
GTGACGGAGGGACCCGCTTGGGGTGGCTCGGACACTCTCCCTCCGTCGAGGGCAGGAGCC
ACTCCAGGACTTGACAGGACTGGTGACTGGTGCCCGCCGGGAGGTGCTGCTGAATATGTC
GGGACTGGGACGCGCTCCCCCGATGCCCCCGGCGTGGCGTTCCAGATGGAAGAGGCGTTG
CTGCGGAGTTGTGGGGCTCTGAGGACGGTGTCCCACACCCCGCGGGGTCTGCCGCCCCAT
TAAAAGGGCCGCGCCCTCACCCCTCGGCCTCTCGGGTGCAGCGGCCTCTTCTGCAGTCTG
TTTTGGGGCAGATGTGAAAGCTCACGCATCCCCCCATCTTCCCGGCTGGGTTGTCACCTC
AGGGTTGGCAGTGGGGTGACAAAGCCTGGGGTTCTGCTCAGAGCACTGGGGTCACTCCCA
GCGCACACCTCTTGGCGTGGGCAGAGGGGGGTCCAGGGACTGGGAGGACCCCGCGTTCCC
GCTGCCTGCCACCCTGATGCACAAACCCAGCCAGTTCTCAGGCAGGAAGGAATCGGGGCC
TCTGCTCCCTGGGGGCGGTTGAGCCCGCCTAGGGCCCCTCCTCGGACATACCGTGGCCTT
AGAGGTCAAGCCGGTTGCCAGAAGGGCTGGGGTTGATCCCCAACCCACGCAGGGAGGTTG
GCGCCTGGCCAGAGGGCTCCGCGGGAGATGAATCACCTCCCGGCCGGCTGGGCGGCGCTC
GCTGTTTACAGGAGGCCGGCTCCCGGGAGGACCCTGCACCCCGCCCTTCCTGCGCCTGTT
ATCTCTGCCCCACAGCAGCCCTGGGCAGCGCCGGGGCCCGCTGGGCTCCTCTTAGGGCCA
AAACAGATTTCCCAGCCCCTGCCAGCCAGTCCGGGTCCGGGGGAAACCGTTTGCCTTTCC
TGCTTTTTGGCAGCTCTCCCCCCAGCGGATGCGCTGCGTGTCCGCAGAGGAAGCCGGGCT
GTGAAGGGCCGGACTGCTTCCCTGGGGTGAGGGGGCATTCAGAAAGCAGGACCCGAGGCT
GCTGCGTGACCAGAGAGCGTGCTGACCTGCCCTGCGGTCCCCAAGAGAGAAATCAAGTCA
CACTTGCCTCCAGCCCACAAGCACACACTTGGCATCAAAAGAGATGGGCTCTCTCCCTCC
CCACCTCGGAGGAGCCTTTGCAGCCCTGGAGAGAGGGGCCGCTGCCCCGAGCTCCCAGGG
CTTCCTGCCCGGCCACCCCAGCAGGGGCCCATCTCCTTCCACAAGGGCCTGTGGAGCTTG
AGTGGGAGGCAGCGTGGGGCAGGGGGCACAGCAGGAACAGAGCCAGCATCCCTGCTCTGG
ATCCCAGTTGAAGACAAGTTGTGTCTGGAGTCCTGTGGGTTATGGGCCCCTCCCTCCGTA
AAGCCTTCTCTGTCAGATCACGGCAATAAAGCTTCTTAAGGTGAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q659G6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q659G6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               819-938, - strand, RNAz p=0.952595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               819-938, - strand, RNAz p=0.952595

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-148, gnl|bosTau2|chr19 (51454277-51454130)
               

               
               1-148, gnl|Hg17|chr17 (71175011-71175158)
               

               
               1-148, gnl|Mm7|chr11 (116042685-116042831)
               


               
               780-2127, gnl|bosTau2|chr19 (47395187-47393817)
               

               
               780-2127, gnl|Hg17|chr17 (71214012-71215415)
               

               
               780-2127, gnl|Mm7|chr11 (116073253-116074621)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-148, gnl|bosTau2|chr19 (51454277-51454130)
               

               
               1-148, gnl|Hg17|chr17 (71175011-71175158)
               

               
               1-148, gnl|Mm7|chr11 (116042685-116042831)
               


               
               780-2127, gnl|bosTau2|chr19 (47395187-47393817)
               

               
               780-2127, gnl|Hg17|chr17 (71214012-71215415)
               

               
               780-2127, gnl|Mm7|chr11 (116073253-116074621)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	1-148, gnl\|bosTau2\|chr19 (51454277-51454130)
	1-148, gnl\|Hg17\|chr17 (71175011-71175158)
	1-148, gnl\|Mm7\|chr11 (116042685-116042831)

	780-2127, gnl\|bosTau2\|chr19 (47395187-47393817)
	780-2127, gnl\|Hg17\|chr17 (71214012-71215415)
	780-2127, gnl\|Mm7\|chr11 (116073253-116074621)