Ss1.1-Pig4-TMW8058L07.3
|
AGCGGCTGTTGAGGCGGGCGAGCAGGCCCTCGCTGGCTGCGCAGAGGGGGTTCTGGGGTT
AGCTTGGAAGCCCGCTCTCGGGGCGCGTCACGTGCGTCTCTAAGCCTGGTATCGCCTGAG
GACCCAAAGAGCGTGGGACACCCGGGCGTTCCCCACGGGACTCAGGGCCTCCCCACAGCT
GGAGCGGCAGGAGGGCGTGGAGCAGGAGGCGGTGACTGGGGCCACCGCAGGCCCGTCACC
ACCCATTTCGAAATGTGTTTCCTCGGTTGTAAATTGGGGTGATAATTCCTACGGAGGAGG
GAGCATTGACCTTTCCTTCATCAAGCCAAAGATGCCTCTCTTTGGGAGTACGTTCAGTCC
GAAGAAGACGCCCCCTCGGAAGTCCGCCTCGCTCTCCAACCTGCATAATTTGGATCGTTC
AACCCGGGAGGTGGAGCTGGGCCTTGACTACGGAACCCCCACTATGAACCTGGCGGGGCA
AAGCCTGAAGTTTGAAAATGGCCAGTGGATAGCAGAGTCGGGGATTAGTGGAGGCGTGGA
CCGGAGGGAGGCTCAGCGCCTCCGGAGGCGGAACCAGCAGTTGGAGGAAGAGAACAATCT
CTTACGGCTCAAGGTGGACATCCTGCTAGACATGCTCTCCGAGACCACTGCCGAATCCCA
CTTAATGGAGAAGGAGCTGGATGAACTGAAGGGTGTCAGTCAGCGGAGAAAATGAAGACC
CCACAGACCTCGGTTAGGACAAAAGGGAGAAACCCATTCGTCAGAAGAGGAGGATGTGGC
CGAGGGATTTTTTTTTTTTTTAGCCAAACTAGTGGATTAGGTCTTGGGAGAGAGTATCAT
ACAACGGGACCAAAAGGCGCTGGCCCCCTTGGGTTGCAGTAGAAAGGTGACAACATAGTG
GAAACCAGGATTCCAGGCCAATCCTGCGCTCCCGGCGCAGGGAGGCCTCCTCGGGGAGGT
CTGCAATGATGGGAGCCCTTGGGTGCTTTCCAGTCAGTGAACACACAGATGCCCGTGGCC
CGGGCTCACCCTCCTTGACAGAGTTCCTCACAGCCGCTGACGCTGATGTTTGGGGAGCAG
TGCCAGTTATACTGAGTGCTGTTGTTAGGGGGTCTTGGACGAGAGACTCTCTTTGGTCCT
CTGCCCTTCAGGCCACTGTCTCCCACCTGCAAATACTGGTTCCCCAATCCATAGCCTCTT
CCGGCTTTGGCTTCTCAGCAGCAAGTGCCAGCCTTCCACAGCAACACTCTATTTTTGTGC
TATTTTCCTGTTTACCCTACTTTTTAAAATTAAATGATATTATATAATCAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCGGCTGTTGAGGCGGGCGAGCAGGCCCTCGCTGGCTGCGCAGAGGGGGTTCTGGGGTT
AGCTTGGAAGCCCGCTCTCGGGGCGCGTCACGTGCGTCTCTAAGCCTGGTATCGCCTGAG
GACCCAAAGAGCGTGGGACACCCGGGCGTTCCCCACGGGACTCAGGGCCTCCCCACAGCT
GGAGCGGCAGGAGGGCGTGGAGCAGGAGGCGGTGACTGGGGCCACCGCAGGCCCGTCACC
ACCCATTTCGAAATGTGTTTCCTCGGTTGTAAATTGGGGTGATAATTCCTACGGAGGAGG
GAGCATTGACCTTTCCTTCATCAAGCCAAAGATGCCTCTCTTTGGGAGTACGTTCAGTCC
GAAGAAGACGCCCCCTCGGAAGTCCGCCTCGCTCTCCAACCTGCATAATTTGGATCGTTC
AACCCGGGAGGTGGAGCTGGGCCTTGACTACGGAACCCCCACTATGAACCTGGCGGGGCA
AAGCCTGAAGTTTGAAAATGGCCAGTGGATAGCAGAGTCGGGGATTAGTGGAGGCGTGGA
CCGGAGGGAGGCTCAGCGCCTCCGGAGGCGGAACCAGCAGTTGGAGGAAGAGAACAATCT
CTTACGGCTCAAGGTGGACATCCTGCTAGACATGCTCTCCGAGACCACTGCCGAATCCCA
CTTAATGGAGAAGGAGCTGGATGAACTGAAGGGTGTCAGTCAGCGGAGAAAATGAAGACC
CCACAGACCTCGGTTAGGACAAAAGGGAGAAACCCATTCGTCAGAAGAGGAGGATGTGGC
CGAGGGATTTTTTTTTTTTTTAGCCAAACTAGTGGATTAGGTCTTGGGAGAGAGTATCAT
ACAACGGGACCAAAAGGCGCTGGCCCCCTTGGGTTGCAGTAGAAAGGTGACAACATAGTG
GAAACCAGGATTCCAGGCCAATCCTGCGCTCCCGGCGCAGGGAGGCCTCCTCGGGGAGGT
CTGCAATGATGGGAGCCCTTGGGTGCTTTCCAGTCAGTGAACACACAGATGCCCGTGGCC
CGGGCTCACCCTCCTTGACAGAGTTCCTCACAGCCGCTGACGCTGATGTTTGGGGAGCAG
TGCCAGTTATACTGAGTGCTGTTGTTAGGGGGTCTTGGACGAGAGACTCTCTTTGGTCCT
CTGCCCTTCAGGCCACTGTCTCCCACCTGCAAATACTGGTTCCCCAATCCATAGCCTCTT
CCGGCTTTGGCTTCTCAGCAGCAAGTGCCAGCCTTCCACAGCAACACTCTATTTTTGTGC
TATTTTCCTGTTTACCCTACTTTTTAAAATTAAATGATATTATATAATCAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
5-289, gnl|bosTau2|chr5 (67825106-67825390) |
|
5-289, gnl|Hg17|chr22 (37377166-37377451) |
| |
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293-412, gnl|bosTau2|chr5 (67830258-67830377) |
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293-412, gnl|canFam2|chr10 (29200456-29200537) |
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293-412, gnl|dasNov1|scaffold_58638 (10098-10181) |
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293-412, gnl|echTel1|scaffold_300144 (282-202) |
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293-412, gnl|fr1|chrUn (30357430-30357347) |
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293-412, gnl|hg17|chr2 (174168560-174168643) |
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293-412, gnl|Hg17|chr22 (37388521-37388640) |
|
293-412, gnl|loxAfr1|scaffold_6956 (51654-51571) |
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293-412, gnl|mm7|chr15 (79745656-79745573) |
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293-412, gnl|Mm7|chr15 (79745532-79745659) |
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293-412, gnl|panTro1|chr13 (63807995-63808078) |
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293-412, gnl|rheMac2|chr3 (2975881-2975964) |
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293-412, gnl|rn3|chr7 (117939634-117939551) |
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293-412, gnl|tetNig1|chr2 (3231216-3231135) |
| |
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634-1309, gnl|bosTau2|chr5 (67833841-67834497) |
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634-1309, gnl|Hg17|chr22 (37393663-37394359) |
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634-1309, gnl|Mm7|chr15 (79751119-79751794) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-289, gnl|bosTau2|chr5 (67825106-67825390) |
|
5-289, gnl|Hg17|chr22 (37377166-37377451) |
| |
|
293-412, gnl|bosTau2|chr5 (67830258-67830377) |
|
293-412, gnl|canFam2|chr10 (29200456-29200537) |
|
293-412, gnl|dasNov1|scaffold_58638 (10098-10181) |
|
293-412, gnl|echTel1|scaffold_300144 (282-202) |
|
293-412, gnl|fr1|chrUn (30357430-30357347) |
|
293-412, gnl|hg17|chr2 (174168560-174168643) |
|
293-412, gnl|Hg17|chr22 (37388521-37388640) |
|
293-412, gnl|loxAfr1|scaffold_6956 (51654-51571) |
|
293-412, gnl|mm7|chr15 (79745656-79745573) |
|
293-412, gnl|Mm7|chr15 (79745532-79745659) |
|
293-412, gnl|panTro1|chr13 (63807995-63808078) |
|
293-412, gnl|rheMac2|chr3 (2975881-2975964) |
|
293-412, gnl|rn3|chr7 (117939634-117939551) |
|
293-412, gnl|tetNig1|chr2 (3231216-3231135) |
| |
|
634-1309, gnl|bosTau2|chr5 (67833841-67834497) |
|
634-1309, gnl|Hg17|chr22 (37393663-37394359) |
|
634-1309, gnl|Mm7|chr15 (79751119-79751794) |
|
fce (0.271592) |
|
nmm (0.265604) |
|
col (0.195008) |
|
fty (0.17584) |
|
cst (0.140036) |
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pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
fce (0.271592) |
|
nmm (0.265604) |
|
col (0.195008) |
|
fty (0.17584) |
|
cst (0.140036) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
