Non-Coding RNA Search

Ss1.1-Pig4-TMW8058L10.5

Sequence:


               
               CCTTGACTATGTCATGGGAGGATGTCAACTGAATTTTACTGTGAGTAACACACTGAATTT
TTCAAAGTAGGCAGTAACATGTTGCTTTTTCCCCCCTCCATTTTGCAGTGTTCTTTCCTT
CACTGCCAAACTGTGTTGAAATTTACACAATCTATTGAATATAGTCTCCTCAGACAGCAT
GTCTACGTCCGTGCTAAAGCTTTTGGCCTTGTCGATAAGATCTGTACCTCCTGCAAGAAA
GCAGATATGTACAAATCAGTGATTATCCTGCAGTAATTTAAATAATAAAAAAATTAGTCA
AACAAACATACAGAAAACAAACCCTATGTCTAAAGTCATAGATGTAATATTTCATGATTT
AAGATATCTGGAAAAATAGGAATAGCAGGTTGCTTCATGCTAAGGCTTTAATTGTTTAAT
TGTCTATAGAAATACCTATAGCCTCAGGCATTTGTTAGGAAAGGGCAATAGTAGGCTCCG
GGATGAATATTTGTATTTCAGCATTCAGTGTTTGTCTTCCTGGATATCAAGCCGAGGCAT
TCTTGCCTTCACTTTAGTAAGGGCTGCAATTGTTATTTGGCAGGTGGGAGTGGACTTCAC
CGGCTCCAATGGTGACCCAAGGTCTCCCAACTCCCTTCATTACATCAGCCCCAATGGTGT
TAATGAGTATTTGACTGCTATCTGGTCTGTGGGACTGGTCATTCAAGATTATGATGCGTG
AGTATGATTCCACTGCCCAGAAAGGGCAGTTTCTGTACCATCTGCTGGTACTTTGATGTA
GTTAATGGGATAAGGATGGTGGAGAGGAGTAGTTTTCTCTCTAAAATTTCTCTTAGCTTT
TCTTTTCTGTTTCTCTCTTGGTGACAGGTTTAGCGTTCCTTTGACCTGTAATTTCTAGCT
GTGATCAATTATAGTGTATTCTTTATAGCTTGCTTATTTAACAGCTGACTGAAGTTGGCA
GGGCTTTTGTTTCTTTGATCTGGTTTCCTTGGAATTTACTCATTAAGGATATGTTATCTG
TGTGGTTGAAGTCCAGATGACATGTTTTGGGAACACTTGCAGACAATATTTCTTAGCATG
TCTATTTCCTTGGCAGTCACTGTCAAATTATTTTCTTTCTTCTTCTTTTTTTTTTTTTTT
CTTTTTGCAGCCTCACCTGTGACATGTAGAAGTCCCCAAGCCTGGGGTCGAATCAGAGCT
GCAGCTGAGACCTGTGCCACAGCCATAGCAACATGATATTTGAGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGACTATGTCATGGGAGGATGTCAACTGAATTTTACTGTGAGTAACACACTGAATTT
TTCAAAGTAGGCAGTAACATGTTGCTTTTTCCCCCCTCCATTTTGCAGTGTTCTTTCCTT
CACTGCCAAACTGTGTTGAAATTTACACAATCTATTGAATATAGTCTCCTCAGACAGCAT
GTCTACGTCCGTGCTAAAGCTTTTGGCCTTGTCGATAAGATCTGTACCTCCTGCAAGAAA
GCAGATATGTACAAATCAGTGATTATCCTGCAGTAATTTAAATAATAAAAAAATTAGTCA
AACAAACATACAGAAAACAAACCCTATGTCTAAAGTCATAGATGTAATATTTCATGATTT
AAGATATCTGGAAAAATAGGAATAGCAGGTTGCTTCATGCTAAGGCTTTAATTGTTTAAT
TGTCTATAGAAATACCTATAGCCTCAGGCATTTGTTAGGAAAGGGCAATAGTAGGCTCCG
GGATGAATATTTGTATTTCAGCATTCAGTGTTTGTCTTCCTGGATATCAAGCCGAGGCAT
TCTTGCCTTCACTTTAGTAAGGGCTGCAATTGTTATTTGGCAGGTGGGAGTGGACTTCAC
CGGCTCCAATGGTGACCCAAGGTCTCCCAACTCCCTTCATTACATCAGCCCCAATGGTGT
TAATGAGTATTTGACTGCTATCTGGTCTGTGGGACTGGTCATTCAAGATTATGATGCGTG
AGTATGATTCCACTGCCCAGAAAGGGCAGTTTCTGTACCATCTGCTGGTACTTTGATGTA
GTTAATGGGATAAGGATGGTGGAGAGGAGTAGTTTTCTCTCTAAAATTTCTCTTAGCTTT
TCTTTTCTGTTTCTCTCTTGGTGACAGGTTTAGCGTTCCTTTGACCTGTAATTTCTAGCT
GTGATCAATTATAGTGTATTCTTTATAGCTTGCTTATTTAACAGCTGACTGAAGTTGGCA
GGGCTTTTGTTTCTTTGATCTGGTTTCCTTGGAATTTACTCATTAAGGATATGTTATCTG
TGTGGTTGAAGTCCAGATGACATGTTTTGGGAACACTTGCAGACAATATTTCTTAGCATG
TCTATTTCCTTGGCAGTCACTGTCAAATTATTTTCTTTCTTCTTCTTTTTTTTTTTTTTT
CTTTTTGCAGCCTCACCTGTGACATGTAGAAGTCCCCAAGCCTGGGGTCGAATCAGAGCT
GCAGCTGAGACCTGTGCCACAGCCATAGCAACATGATATTTGAGCTGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1117, gnl|bosTau2|chr14 (48096980-48095873)
               

               
               1-1117, gnl|Hg17|chr8 (87629075-87630282)
               

               
               1-1117, gnl|Mm7|chr4 (19460242-19458999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1117, gnl|bosTau2|chr14 (48096980-48095873)
               

               
               1-1117, gnl|Hg17|chr8 (87629075-87630282)
               

               
               1-1117, gnl|Mm7|chr4 (19460242-19458999)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	1-1117, gnl\|bosTau2\|chr14 (48096980-48095873)
	1-1117, gnl\|Hg17\|chr8 (87629075-87630282)
	1-1117, gnl\|Mm7\|chr4 (19460242-19458999)