Ss1.1-Pig4-TMW8058L14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAATGTCCTGCTTGATGCACACATGAATGCAAAAATAGCTGACTTCGGTCTTTCAAAC ATGATGTCATATGGTGAATTTTTAAGAACGAGTTGTGGCTCACCCAACTATGCTGCACCA GAAGTAATTTCAGGAAGGTTGTATGCTGGTCCAGAGGTAGATATATGGAGCAGTGGGGTT ATTCTCTATGCTTTATTATGTGGAACACTTCCATTTGATGATGATCATGTGCCAACTCTT TTTAAGAAGATTTGTGATGGGATCTTTTATACCCCTCAGTATTTAAATCCTTCTGTGATT AGCCTTTTGAAACATATGCTACAGGTGGATCCCATGAAGAGAGCCACAATCAAAGATATC AGGGAACATGAATGGTTTAAACAGGACCTTCCAAAATATCTCTTTCCTGAGGATCCATCG TATAGTTCAACCATGATTGATGATGAAGCCTTAAAAGAAGTATGTGAAAAATTTGAATGC TCAGAAGAGGAGGTTCTCAGCTGCCTTTATAACAGAAATCACCAGGACCCTTTGGCAGTT GCCTACCACCTTATAATAGATAACAGGAGAATAATGAATGAGGCCAAAGATTTTTACTTG GCAACAAGCCCACCTGATTCTTTTCTTGATGATCACCATTTGACTCGGCCCCATCCTGAA AGAGTACCGTTTTTGGTTGCTGAAACTCCAAGGGCACGCCATACCCTTGATGAATTAAAT CCACAAAAATCCAAACACCAAGGTGTAAGGAAAGCAAAATGGCATTTGGGAATTAGAAGT CAAAGTCGACCCAATGATATCATGGCAGAAGTTTGTAGAGCAATTAAACAACTGGATTAT GAGTGGAAGGTTGTAAATCCATATTATTTGCGTGTTCGAAGGAAGAATCCTGTGACAAGT ACATACTCCAAAATGAGTCTACAGTTATACCAAGTGGATAGTAGGACGTACTTATTGGAT TTCCGTAGTATTGATGATGAAATTACTGAAGCCAAATCAGGGACTGCTACTCCACAGAGA TCGGGCTCAGTTAGCAACTATCGAGCTTGCCAAAGGAATGATTCAGATGCTGAGGCTCAA GGAAAATCCTCAGAAGCTTCTCTTACCTCATCTGTAACCTCACTTGACTCTTCTCCTGTT GACTTAACTCCAAGACCTGGAAGTCACACAATAGAATTTTTTGAGATGTGTGCAAATCTA ATTAAAATTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAATGTCCTGCTTGATGCACACATGAATGCAAAAATAGCTGACTTCGGTCTTTCAAAC ATGATGTCATATGGTGAATTTTTAAGAACGAGTTGTGGCTCACCCAACTATGCTGCACCA GAAGTAATTTCAGGAAGGTTGTATGCTGGTCCAGAGGTAGATATATGGAGCAGTGGGGTT ATTCTCTATGCTTTATTATGTGGAACACTTCCATTTGATGATGATCATGTGCCAACTCTT TTTAAGAAGATTTGTGATGGGATCTTTTATACCCCTCAGTATTTAAATCCTTCTGTGATT AGCCTTTTGAAACATATGCTACAGGTGGATCCCATGAAGAGAGCCACAATCAAAGATATC AGGGAACATGAATGGTTTAAACAGGACCTTCCAAAATATCTCTTTCCTGAGGATCCATCG TATAGTTCAACCATGATTGATGATGAAGCCTTAAAAGAAGTATGTGAAAAATTTGAATGC TCAGAAGAGGAGGTTCTCAGCTGCCTTTATAACAGAAATCACCAGGACCCTTTGGCAGTT GCCTACCACCTTATAATAGATAACAGGAGAATAATGAATGAGGCCAAAGATTTTTACTTG GCAACAAGCCCACCTGATTCTTTTCTTGATGATCACCATTTGACTCGGCCCCATCCTGAA AGAGTACCGTTTTTGGTTGCTGAAACTCCAAGGGCACGCCATACCCTTGATGAATTAAAT CCACAAAAATCCAAACACCAAGGTGTAAGGAAAGCAAAATGGCATTTGGGAATTAGAAGT CAAAGTCGACCCAATGATATCATGGCAGAAGTTTGTAGAGCAATTAAACAACTGGATTAT GAGTGGAAGGTTGTAAATCCATATTATTTGCGTGTTCGAAGGAAGAATCCTGTGACAAGT ACATACTCCAAAATGAGTCTACAGTTATACCAAGTGGATAGTAGGACGTACTTATTGGAT TTCCGTAGTATTGATGATGAAATTACTGAAGCCAAATCAGGGACTGCTACTCCACAGAGA TCGGGCTCAGTTAGCAACTATCGAGCTTGCCAAAGGAATGATTCAGATGCTGAGGCTCAA GGAAAATCCTCAGAAGCTTCTCTTACCTCATCTGTAACCTCACTTGACTCTTCTCCTGTT GACTTAACTCCAAGACCTGGAAGTCACACAATAGAATTTTTTGAGATGTGTGCAAATCTA ATTAAAATTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 678-797, - strand, RNAz p=0.598365 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 678-797, - strand, RNAz p=0.598365 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 359-851, gnl|bosTau2|chr20 (19918746-19918254) | |
| 359-851, gnl|canFam2|chr4 (71806882-71806528) | |
| 359-851, gnl|danRer3|chr5 (29024932-29025298) | |
| 359-851, gnl|dasNov1|scaffold_66852 (444-809) | |
| 359-851, gnl|echTel1|scaffold_225047 (3393-3043) | |
| 359-851, gnl|fr1|chrUn (261818274-261817890) | |
| 359-851, gnl|galGal2|chrZ (6003664-6004015) | |
| 359-851, gnl|hg17|chr5 (40800602-40800956) | |
| 359-851, gnl|Hg17|chr5 (40801101-40800609) | |
| 359-851, gnl|loxAfr1|scaffold_108740 (5373-5023) | |
| 359-851, gnl|mm7|chr15 (5001857-5001503) | |
| 359-851, gnl|Mm7|chr15 (5001356-5001848) | |
| 359-851, gnl|monDom2|scaffold_20 (30254100-30253748) | |
| 359-851, gnl|oryCun1|scaffold_208963 (54542-54188) | |
| 359-851, gnl|panTro1|chr4 (75747045-75746691) | |
| 359-851, gnl|rheMac2|chr6 (40603731-40604085) | |
| 359-851, gnl|rn3|chr2 (54286920-54286569) | |
| 359-851, gnl|tetNig1|chr4 (2939881-2939497) | |
| 359-851, gnl|xenTro1|scaffold_469 (317076-316724) | |
| 976-1212, gnl|bosTau2|chr20 (19916582-19916346) | |
| 976-1212, gnl|Hg17|chr5 (40798882-40798646) | |
| 976-1212, gnl|Mm7|chr15 (5003561-5003797) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 359-851, gnl|bosTau2|chr20 (19918746-19918254) | |
| 359-851, gnl|canFam2|chr4 (71806882-71806528) | |
| 359-851, gnl|danRer3|chr5 (29024932-29025298) | |
| 359-851, gnl|dasNov1|scaffold_66852 (444-809) | |
| 359-851, gnl|echTel1|scaffold_225047 (3393-3043) | |
| 359-851, gnl|fr1|chrUn (261818274-261817890) | |
| 359-851, gnl|galGal2|chrZ (6003664-6004015) | |
| 359-851, gnl|hg17|chr5 (40800602-40800956) | |
| 359-851, gnl|Hg17|chr5 (40801101-40800609) | |
| 359-851, gnl|loxAfr1|scaffold_108740 (5373-5023) | |
| 359-851, gnl|mm7|chr15 (5001857-5001503) | |
| 359-851, gnl|Mm7|chr15 (5001356-5001848) | |
| 359-851, gnl|monDom2|scaffold_20 (30254100-30253748) | |
| 359-851, gnl|oryCun1|scaffold_208963 (54542-54188) | |
| 359-851, gnl|panTro1|chr4 (75747045-75746691) | |
| 359-851, gnl|rheMac2|chr6 (40603731-40604085) | |
| 359-851, gnl|rn3|chr2 (54286920-54286569) | |
| 359-851, gnl|tetNig1|chr4 (2939881-2939497) | |
| 359-851, gnl|xenTro1|scaffold_469 (317076-316724) | |
| 976-1212, gnl|bosTau2|chr20 (19916582-19916346) | |
| 976-1212, gnl|Hg17|chr5 (40798882-40798646) | |
| 976-1212, gnl|Mm7|chr15 (5003561-5003797) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| kid (0.129735) |