Ss1.1-Pig4-TMW8058L18.3
|
AAACCACGCGAGCTTGAGTCAGAGCTGCCCCAGGGGGGGAGGTAAACAGCGGGCGGAGAG
AGGCTCACGGACCCAGGCCAGGCGGCAGCATGCTGGGGCTCCAAGGGCTGCGGCTCCCAC
CGGCGGGATTCCTGCTTCTGTTGCCATTCCTGCTGTTGCTGCTACTGCCGGCAGCCCCTG
CGCCCCACCGGGTTTCCTACAAGCCGGTCATCGTGGTGCATGGGCTCTTTGACAGCTCGT
ACAGCTTCCGCCACCTGCTGGAATACATCAACGAGACACATCCCGGAACTGTGGTGACAG
TGCTTGATCTCTTCGATGGGAGAGAGAGTTTGCGGCCCCTGTGGGAACAGGTGCAAGGGT
TCCGAGAGGCTGTGGCCCCCATCATGGCAAAGGCCCCTCAAGGGGTGCATCTCATCTGCT
TCGATGGGAGAGAGAGTTTGCGGCCCCTGTGGGAACAGGTGCAAGGGTTCCGAGAGGCTG
TGGCCCCCATCATGGCAAAGGCCCCTCAAGGGGTGCATCTCATCTGCTACTCGCAGGGGG
GCCTGGTGTGCCCTACCTCCATGAGGTCTAACCTCTACCGGATCTGCTACTCTTTCATCT
CTCTCTCCTCTCCACAGATGGGACACTGGCACGACCCCCATCATGATGACTTGTACCTCA
ATGCCAGCAGTTTTCTGGCCCTGATCAATGGGGAAAGAGACCATCCCAATGCTACTGCTT
GGCGGAAGAACTTTCTTCGTGTGGGCCGCCTGGTGCTGATTGGGGGCCCTGATGATGGTG
TCATTACCCCCTGGCAGTCCAGCTTCTTTGGTTTCTATGATGCAAATGAGACGGTCTTGG
AGATGGAAGAGCAACTGGTTTATCTTCGTGATTCTTTTGGGTTGAAGACTCTCTTGGCCC
GGGGGGCCATAGTGAGGTGTCCAATGGCTGGGATCTCCCACACGGCCTGGCACTCCAACC
GTACCCTTTATGAGACCTGCATGGAACCTTGGCTCTCCTGACGGATTCCCTCCAGGACTT
CCCAGCCCAGAGACCAGGTGGGAGCTCGGACGTCAGGCCCTGGTGTGCCTGTGACCAACC
TCATTGCTCCCACACTGCCCCCACCAACCCGGGCTCCCAGAATCCCTTCCTCTGCTCTTC
TGTGAATGACAAGGCCTGGCCTCCTCCATCTCATGTCCTCTCAGTTGGGGGGTTGCACTG
TGCTCTCCCACCCTCCCAAGGCCAAGGTTGGGAAGTGAGAAATCAGGTTTTTAACTTGGG
GCTGCTCCTCCTGCTGCTGCTCCTTCGTCTCTGGCTGTGTAGGAGGCAAACCCAGCCCCT
GCCCACCACAGGGGTCTCCTTCCAGGCCACTCAGGACATTTTTAGCTTCTGTTTCCCCAT
GTCCCCTTTCCGTCTGAACTCCCCTGTTGTGAGCTCCCGACCCCCAGGAAGGACCACCCA
TGACAGTGGGGTTCTGAGGCTCCCCTATGGGGACAGTTCCATTCTTGAAGTGTCAGTGTT
GGGGAATATCTGTGGCCTGCGAGGCCCATCTCAGGTTTGGGGATTCCCCCAGTCCCTATG
CTCAGTATTGGGGCGCCCTCTGGAAGCCTCGTTTCTTTAAGGCTCCAGCCCCTCTTTTAG
CTACCCTTGAATGGGTGTCACTCCTGTATTTATGGAAATAAAGTATCATTTACTCAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAACCACGCGAGCTTGAGTCAGAGCTGCCCCAGGGGGGGAGGTAAACAGCGGGCGGAGAG
AGGCTCACGGACCCAGGCCAGGCGGCAGCATGCTGGGGCTCCAAGGGCTGCGGCTCCCAC
CGGCGGGATTCCTGCTTCTGTTGCCATTCCTGCTGTTGCTGCTACTGCCGGCAGCCCCTG
CGCCCCACCGGGTTTCCTACAAGCCGGTCATCGTGGTGCATGGGCTCTTTGACAGCTCGT
ACAGCTTCCGCCACCTGCTGGAATACATCAACGAGACACATCCCGGAACTGTGGTGACAG
TGCTTGATCTCTTCGATGGGAGAGAGAGTTTGCGGCCCCTGTGGGAACAGGTGCAAGGGT
TCCGAGAGGCTGTGGCCCCCATCATGGCAAAGGCCCCTCAAGGGGTGCATCTCATCTGCT
TCGATGGGAGAGAGAGTTTGCGGCCCCTGTGGGAACAGGTGCAAGGGTTCCGAGAGGCTG
TGGCCCCCATCATGGCAAAGGCCCCTCAAGGGGTGCATCTCATCTGCTACTCGCAGGGGG
GCCTGGTGTGCCCTACCTCCATGAGGTCTAACCTCTACCGGATCTGCTACTCTTTCATCT
CTCTCTCCTCTCCACAGATGGGACACTGGCACGACCCCCATCATGATGACTTGTACCTCA
ATGCCAGCAGTTTTCTGGCCCTGATCAATGGGGAAAGAGACCATCCCAATGCTACTGCTT
GGCGGAAGAACTTTCTTCGTGTGGGCCGCCTGGTGCTGATTGGGGGCCCTGATGATGGTG
TCATTACCCCCTGGCAGTCCAGCTTCTTTGGTTTCTATGATGCAAATGAGACGGTCTTGG
AGATGGAAGAGCAACTGGTTTATCTTCGTGATTCTTTTGGGTTGAAGACTCTCTTGGCCC
GGGGGGCCATAGTGAGGTGTCCAATGGCTGGGATCTCCCACACGGCCTGGCACTCCAACC
GTACCCTTTATGAGACCTGCATGGAACCTTGGCTCTCCTGACGGATTCCCTCCAGGACTT
CCCAGCCCAGAGACCAGGTGGGAGCTCGGACGTCAGGCCCTGGTGTGCCTGTGACCAACC
TCATTGCTCCCACACTGCCCCCACCAACCCGGGCTCCCAGAATCCCTTCCTCTGCTCTTC
TGTGAATGACAAGGCCTGGCCTCCTCCATCTCATGTCCTCTCAGTTGGGGGGTTGCACTG
TGCTCTCCCACCCTCCCAAGGCCAAGGTTGGGAAGTGAGAAATCAGGTTTTTAACTTGGG
GCTGCTCCTCCTGCTGCTGCTCCTTCGTCTCTGGCTGTGTAGGAGGCAAACCCAGCCCCT
GCCCACCACAGGGGTCTCCTTCCAGGCCACTCAGGACATTTTTAGCTTCTGTTTCCCCAT
GTCCCCTTTCCGTCTGAACTCCCCTGTTGTGAGCTCCCGACCCCCAGGAAGGACCACCCA
TGACAGTGGGGTTCTGAGGCTCCCCTATGGGGACAGTTCCATTCTTGAAGTGTCAGTGTT
GGGGAATATCTGTGGCCTGCGAGGCCCATCTCAGGTTTGGGGATTCCCCCAGTCCCTATG
CTCAGTATTGGGGCGCCCTCTGGAAGCCTCGTTTCTTTAAGGCTCCAGCCCCTCTTTTAG
CTACCCTTGAATGGGTGTCACTCCTGTATTTATGGAAATAAAGTATCATTTACTCAAAAA
AAAAAAAAAAAA
|
|
gi|57209674|emb|CAI41797.1| |
Protein identifier
|
gi|57209674|emb|CAI41797.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
79-275, gnl|bosTau2|chr23 (23714095-23713893) |
|
79-275, gnl|Hg17|chr6 (32230339-32230532) |
|
79-275, gnl|Mm7|chr17 (32712338-32712145) |
| |
|
414-538, gnl|bosTau2|chr23 (23713612-23713489) |
|
414-538, gnl|canFam2|chr12 (4554841-4554970) |
|
414-538, gnl|danRer3|chr19 (16190550-16190421) |
|
414-538, gnl|echTel1|scaffold_215370 (6214-6085) |
|
414-538, gnl|fr1|chrUn (288709463-288709592) |
|
414-538, gnl|hg17|chr6 (32230812-32230941) |
|
414-538, gnl|Hg17|chr6 (32230816-32230939) |
|
414-538, gnl|mm7|chr17 (32711927-32711798) |
|
414-538, gnl|Mm7|chr17 (32711921-32711798) |
|
414-538, gnl|monDom2|scaffold_42 (17173114-17172985) |
|
414-538, gnl|oryCun1|scaffold_183091 (7901-8030) |
|
414-538, gnl|panTro1|chr5 (32598759-32598888) |
|
414-538, gnl|rheMac2|chr4 (31777381-31777510) |
|
414-538, gnl|rn3|chr20 (4226744-4226873) |
|
414-538, gnl|tetNig1|chr21_random (3078015-3078144) |
| |
|
857-1676, gnl|bosTau2|chr23 (23706813-23706006) |
|
857-1676, gnl|Hg17|chr6 (32238561-32239430) |
|
857-1676, gnl|Mm7|chr17 (32702895-32702070) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
79-275, gnl|bosTau2|chr23 (23714095-23713893) |
|
79-275, gnl|Hg17|chr6 (32230339-32230532) |
|
79-275, gnl|Mm7|chr17 (32712338-32712145) |
| |
|
414-538, gnl|bosTau2|chr23 (23713612-23713489) |
|
414-538, gnl|canFam2|chr12 (4554841-4554970) |
|
414-538, gnl|danRer3|chr19 (16190550-16190421) |
|
414-538, gnl|echTel1|scaffold_215370 (6214-6085) |
|
414-538, gnl|fr1|chrUn (288709463-288709592) |
|
414-538, gnl|hg17|chr6 (32230812-32230941) |
|
414-538, gnl|Hg17|chr6 (32230816-32230939) |
|
414-538, gnl|mm7|chr17 (32711927-32711798) |
|
414-538, gnl|Mm7|chr17 (32711921-32711798) |
|
414-538, gnl|monDom2|scaffold_42 (17173114-17172985) |
|
414-538, gnl|oryCun1|scaffold_183091 (7901-8030) |
|
414-538, gnl|panTro1|chr5 (32598759-32598888) |
|
414-538, gnl|rheMac2|chr4 (31777381-31777510) |
|
414-538, gnl|rn3|chr20 (4226744-4226873) |
|
414-538, gnl|tetNig1|chr21_random (3078015-3078144) |
| |
|
857-1676, gnl|bosTau2|chr23 (23706813-23706006) |
|
857-1676, gnl|Hg17|chr6 (32238561-32239430) |
|
857-1676, gnl|Mm7|chr17 (32702895-32702070) |
|
pla (0.267344) |
|
fcc (0.197785) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
ute (0.132784) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
pla (0.267344) |
|
fcc (0.197785) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
ute (0.132784) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
cty (0.10408) |
