Ss1.1-Pig4-TMW8058L19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGTCCTTCCTGGGTGCCACCTCCGCGGAAGATCTCAGCAAGACAACATGCCTCCCAAG AAGCCTGAGCCTAAGAAGGAAGCGGCCAAGGCAGCCCCAGCCCCAGCCCCGGCCCCGGCT CCAGCCCCTGCCCCACCTCCTGAGCCTGCCAAGGAACCCACCTTTGACCCCAAGAGTATA AAGATAGACTTCACTGCTGACCAGATCGAAGAGTTCAAAGAGGCCTTTTCGCTGTTTGAC CGGACCCCGACCGGAGAGATGAAGATCACCTATGGGCAGTGCGGGGACGTGCTGCGGGCC CTGGGCCAGAACCCCACTAATGCCGAGGTGCTGCGCGTCCTGGGCAAGCCCAAGCCAGAA GAAATGAATGCCAAGATGCTGGACTTTGAGACGTTCCTGCCCATCCTGCAGCACATCTCC CGCAACAAGGAGCAGGGCACCTATGAGGACTTTGTGGAGGGGCTGCGTGTGTTCGACAAG GAGAGCAACGGCACAGTCATGGGCGCTGAGCTTCGCCATGTCCTCGCCACCCTGGGAGAG AAGATGACTGAGGCCGAAGTGGAGCAGCTGTTAGCCGGGCAAGAGGATGCCAATGGCTGC ATCAATTACGAAGCCTTTGTCAAGCACATCATGTCTGGGTGAAGCAGACCCCTCCAGGGT GCCTGGCCCTTGGCCTTAGCCCAGGGGAGTTAACGAGAGGCCCAGAGTGACCGAGCTGGA GCTAGAGTCCTGGACTTTCCACTGCACCGCAGCCCCGAGGACCTCATGGGCCCATATCCC TCCCTGTAAATAAACAGCTCTGCAAGGCTGGGCCAAGTTCCCTGATTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGTCCTTCCTGGGTGCCACCTCCGCGGAAGATCTCAGCAAGACAACATGCCTCCCAAG AAGCCTGAGCCTAAGAAGGAAGCGGCCAAGGCAGCCCCAGCCCCAGCCCCGGCCCCGGCT CCAGCCCCTGCCCCACCTCCTGAGCCTGCCAAGGAACCCACCTTTGACCCCAAGAGTATA AAGATAGACTTCACTGCTGACCAGATCGAAGAGTTCAAAGAGGCCTTTTCGCTGTTTGAC CGGACCCCGACCGGAGAGATGAAGATCACCTATGGGCAGTGCGGGGACGTGCTGCGGGCC CTGGGCCAGAACCCCACTAATGCCGAGGTGCTGCGCGTCCTGGGCAAGCCCAAGCCAGAA GAAATGAATGCCAAGATGCTGGACTTTGAGACGTTCCTGCCCATCCTGCAGCACATCTCC CGCAACAAGGAGCAGGGCACCTATGAGGACTTTGTGGAGGGGCTGCGTGTGTTCGACAAG GAGAGCAACGGCACAGTCATGGGCGCTGAGCTTCGCCATGTCCTCGCCACCCTGGGAGAG AAGATGACTGAGGCCGAAGTGGAGCAGCTGTTAGCCGGGCAAGAGGATGCCAATGGCTGC ATCAATTACGAAGCCTTTGTCAAGCACATCATGTCTGGGTGAAGCAGACCCCTCCAGGGT GCCTGGCCCTTGGCCTTAGCCCAGGGGAGTTAACGAGAGGCCCAGAGTGACCGAGCTGGA GCTAGAGTCCTGGACTTTCCACTGCACCGCAGCCCCGAGGACCTCATGGGCCCATATCCC TCCCTGTAAATAAACAGCTCTGCAAGGCTGGGCCAAGTTCCCTGATTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-183, gnl|bosTau2|chr19 (41624998-41624828) | |
| 1-183, gnl|Hg17|chr17 (42641740-42641922) | |
| 1-183, gnl|Mm7|chr11 (104686448-104686615) | |
| 210-361, gnl|bosTau2|chr3 (78879705-78879554) | |
| 210-361, gnl|canFam2|chr20 (44943394-44943300) | |
| 210-361, gnl|danRer3|chr3 (15203195-15203101) | |
| 210-361, gnl|dasNov1|scaffold_109743 (2709-2624) | |
| 210-361, gnl|echTel1|scaffold_301391 (4332-4238) | |
| 210-361, gnl|fr1|chrUn (137013836-137013742) | |
| 210-361, gnl|galGal2|chr27 (1288451-1288357) | |
| 210-361, gnl|hg17|chr3 (46877169-46877263) | |
| 210-361, gnl|Hg17|chr3 (46877321-46877170) | |
| 210-361, gnl|loxAfr1|scaffold_38552 (18487-18393) | |
| 210-361, gnl|mm7|chr9 (110464475-110464381) | |
| 210-361, gnl|Mm7|chr9 (110464321-110464472) | |
| 210-361, gnl|monDom2|scaffold_5 (80850564-80850658) | |
| 210-361, gnl|oryCun1|scaffold_185462 (7199-7293) | |
| 210-361, gnl|panTro1|chr2 (48316283-48316377) | |
| 210-361, gnl|rheMac2|chr2 (89679616-89679522) | |
| 210-361, gnl|rn3|chr8 (115163170-115163076) | |
| 210-361, gnl|tetNig1|chr15_random (1233710-1233616) | |
| 210-361, gnl|xenTro1|scaffold_221 (1522363-1522457) | |
| 380-540, gnl|bosTau2|chr5 (33461706-33461546) | |
| 380-540, gnl|canFam2|chr10 (3458830-3458685) | |
| 380-540, gnl|danRer3|chr5 (69754322-69754177) | |
| 380-540, gnl|dasNov1|scaffold_224742 (1059-914) | |
| 380-540, gnl|echTel1|scaffold_314392 (56535-56680) | |
| 380-540, gnl|fr1|chrUn (42323328-42323473) | |
| 380-540, gnl|Hg17|chr12 (54835488-54835648) | |
| 380-540, gnl|hg17|chr2 (208959668-208959813) | |
| 380-540, gnl|loxAfr1|scaffold_38552 (15719-15571) | |
| 380-540, gnl|mm7|chr10 (127996759-127996904) | |
| 380-540, gnl|Mm7|chr10 (127996914-127996754) | |
| 380-540, gnl|monDom2|scaffold_3 (99961745-99961870) | |
| 380-540, gnl|oryCun1|scaffold_185462 (6512-6657) | |
| 380-540, gnl|panTro1|chr13 (99031976-99032121) | |
| 380-540, gnl|rheMac2|chr12 (72148882-72149027) | |
| 380-540, gnl|rn3|chrX (62112835-62112690) | |
| 380-540, gnl|tetNig1|chr4 (4778044-4777899) | |
| 380-540, gnl|xenTro1|scaffold_85 (2217512-2217373) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-183, gnl|bosTau2|chr19 (41624998-41624828) | |
| 1-183, gnl|Hg17|chr17 (42641740-42641922) | |
| 1-183, gnl|Mm7|chr11 (104686448-104686615) | |
| 210-361, gnl|bosTau2|chr3 (78879705-78879554) | |
| 210-361, gnl|canFam2|chr20 (44943394-44943300) | |
| 210-361, gnl|danRer3|chr3 (15203195-15203101) | |
| 210-361, gnl|dasNov1|scaffold_109743 (2709-2624) | |
| 210-361, gnl|echTel1|scaffold_301391 (4332-4238) | |
| 210-361, gnl|fr1|chrUn (137013836-137013742) | |
| 210-361, gnl|galGal2|chr27 (1288451-1288357) | |
| 210-361, gnl|hg17|chr3 (46877169-46877263) | |
| 210-361, gnl|Hg17|chr3 (46877321-46877170) | |
| 210-361, gnl|loxAfr1|scaffold_38552 (18487-18393) | |
| 210-361, gnl|mm7|chr9 (110464475-110464381) | |
| 210-361, gnl|Mm7|chr9 (110464321-110464472) | |
| 210-361, gnl|monDom2|scaffold_5 (80850564-80850658) | |
| 210-361, gnl|oryCun1|scaffold_185462 (7199-7293) | |
| 210-361, gnl|panTro1|chr2 (48316283-48316377) | |
| 210-361, gnl|rheMac2|chr2 (89679616-89679522) | |
| 210-361, gnl|rn3|chr8 (115163170-115163076) | |
| 210-361, gnl|tetNig1|chr15_random (1233710-1233616) | |
| 210-361, gnl|xenTro1|scaffold_221 (1522363-1522457) | |
| 380-540, gnl|bosTau2|chr5 (33461706-33461546) | |
| 380-540, gnl|canFam2|chr10 (3458830-3458685) | |
| 380-540, gnl|danRer3|chr5 (69754322-69754177) | |
| 380-540, gnl|dasNov1|scaffold_224742 (1059-914) | |
| 380-540, gnl|echTel1|scaffold_314392 (56535-56680) | |
| 380-540, gnl|fr1|chrUn (42323328-42323473) | |
| 380-540, gnl|Hg17|chr12 (54835488-54835648) | |
| 380-540, gnl|hg17|chr2 (208959668-208959813) | |
| 380-540, gnl|loxAfr1|scaffold_38552 (15719-15571) | |
| 380-540, gnl|mm7|chr10 (127996759-127996904) | |
| 380-540, gnl|Mm7|chr10 (127996914-127996754) | |
| 380-540, gnl|monDom2|scaffold_3 (99961745-99961870) | |
| 380-540, gnl|oryCun1|scaffold_185462 (6512-6657) | |
| 380-540, gnl|panTro1|chr13 (99031976-99032121) | |
| 380-540, gnl|rheMac2|chr12 (72148882-72149027) | |
| 380-540, gnl|rn3|chrX (62112835-62112690) | |
| 380-540, gnl|tetNig1|chr4 (4778044-4777899) | |
| 380-540, gnl|xenTro1|scaffold_85 (2217512-2217373) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ese (3.03605) | |
| eru (0.60024) | |
| eye (0.170503) | |
| lnt (0.142308) | |
| nbm (0.0993246) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (3.03605) | |
| eru (0.60024) | |
| eye (0.170503) | |
| lnt (0.142308) | |
| nbm (0.0993246) |