Non-Coding RNA Search

Ss1.1-Pig4-TMW8058L21.3

Sequence:


               
               ATTCAACCCAAAGCGATTGGTCAGAATTGGTGGGACTGGCATCTCCCCTGAGGCTTGCAA
TCCACAGTGGTGTTCTGACTGGCTCTCGCCGAGCAGTAGGCATCTCATCTCGAAGTCACA
GATTCTTAATGAGTAGGTCTGTTAGGAGGCAGGGAGTACATGGAGAGAGGAGTCCTGGCT
CCTCGAAGAGACTGTTGTGTTAAGGTAGATAAATACTGAGAGGAGAAAAGACCAGGAACT
TTCCAGTGTAGCTGTGGTGGTTACAGTCACTCGGTTATTAGTGAAGGATCTTGTACAAGA
CAGGAGGACCTAGGGAAGACAGATATCTGGTTGGCATGGATGTCATGAAAAGGCAGGAGA
ATACTGGGAACAAATGAGAAAGAGAGAACACTACAACTTTTCTTGGGCACAAAGGTGCTA
GGCAACTAGGAGCCCAGCGGCACTGGCCTAGAGAGGCTTAGTGTGTGACTGGTGTGGCCT
CCATGACCCAGCATTCTTTTTAGGGGAGGACCTGTCCTACCGGAACTGGGACCTAGGGGA
GACAGCCTGTACAGGATGAATACTTGGATGAATTTAGTCACCAGGAGAAAGGGGGTTATT
TATAAAAGGAAGGTTGTTGATCTAAGCCAAAAGAAGAAATTGTCTTGCGAAGCTTTGTGA
AAGAAAAGATGTGCCTGGTATGTGTGATGTGATTCGGGTGTAAGAAAACATTGTCTTAGG
AGAAGGAGATGAAGGAGTGTGAGTAGCACTGGGGATGCTTACAATTTAACAACTGTAATC
TCACTGGGGAGTGGGAAAGTGATTCTGTAACCATTAGAATTACTTTGATTTGTAATCAAA
ACGGTTCTATGATTTGTCTTTGGCTATACACAGATTATTGTAAAGTCTGGTTTTATAAGC
CCAAGTCATTTTACATTTGCTTTTCCAAAATTTATTAAATTGGAATTTTTTTAATCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAACCCAAAGCGATTGGTCAGAATTGGTGGGACTGGCATCTCCCCTGAGGCTTGCAA
TCCACAGTGGTGTTCTGACTGGCTCTCGCCGAGCAGTAGGCATCTCATCTCGAAGTCACA
GATTCTTAATGAGTAGGTCTGTTAGGAGGCAGGGAGTACATGGAGAGAGGAGTCCTGGCT
CCTCGAAGAGACTGTTGTGTTAAGGTAGATAAATACTGAGAGGAGAAAAGACCAGGAACT
TTCCAGTGTAGCTGTGGTGGTTACAGTCACTCGGTTATTAGTGAAGGATCTTGTACAAGA
CAGGAGGACCTAGGGAAGACAGATATCTGGTTGGCATGGATGTCATGAAAAGGCAGGAGA
ATACTGGGAACAAATGAGAAAGAGAGAACACTACAACTTTTCTTGGGCACAAAGGTGCTA
GGCAACTAGGAGCCCAGCGGCACTGGCCTAGAGAGGCTTAGTGTGTGACTGGTGTGGCCT
CCATGACCCAGCATTCTTTTTAGGGGAGGACCTGTCCTACCGGAACTGGGACCTAGGGGA
GACAGCCTGTACAGGATGAATACTTGGATGAATTTAGTCACCAGGAGAAAGGGGGTTATT
TATAAAAGGAAGGTTGTTGATCTAAGCCAAAAGAAGAAATTGTCTTGCGAAGCTTTGTGA
AAGAAAAGATGTGCCTGGTATGTGTGATGTGATTCGGGTGTAAGAAAACATTGTCTTAGG
AGAAGGAGATGAAGGAGTGTGAGTAGCACTGGGGATGCTTACAATTTAACAACTGTAATC
TCACTGGGGAGTGGGAAAGTGATTCTGTAACCATTAGAATTACTTTGATTTGTAATCAAA
ACGGTTCTATGATTTGTCTTTGGCTATACACAGATTATTGTAAAGTCTGGTTTTATAAGC
CCAAGTCATTTTACATTTGCTTTTCCAAAATTTATTAAATTGGAATTTTTTTAATCCTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr10 (55350461-55349508)
               

               
               1-960, gnl|Hg17|chr14 (68589323-68588341)
               

               
               1-960, gnl|Mm7|chr12 (78300367-78299482)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr10 (55350461-55349508)
               

               
               1-960, gnl|Hg17|chr14 (68589323-68588341)
               

               
               1-960, gnl|Mm7|chr12 (78300367-78299482)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cte (0.58548)
               

               
               gul (0.355177)
               

               
               liv (0.292569)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               gul (0.355177)
               

               
               liv (0.292569)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

	1-960, gnl\|bosTau2\|chr10 (55350461-55349508)
	1-960, gnl\|Hg17\|chr14 (68589323-68588341)
	1-960, gnl\|Mm7\|chr12 (78300367-78299482)

	cte (0.58548)
	gul (0.355177)
	liv (0.292569)
	jej (0.197844)
	fty (0.17584)
	cki (0.165235)
	ski (0.146735)
	ova (0.129132)
	sug (0.127291)