Non-Coding RNA Search

Ss1.1-Pig4-TMW8058M18.3

Sequence:


               
               ACTGTAGAAAGAAAGAACACTACCACTGCAACATTAACGGATGCTTGAAGCTGTACAAAA
GCTGCAGTTACCTGGCTTCAGTTACTTGTAATTTATTGTGGCATGAGACAAGATGGGAAA
ATTTCTGTTTTAAGTGGTATGGATATAACTAGCATATTGAACCACACAAGTGCTTAACTC
ATTGTTATGTAATCTTTGTACATATAGGCAGTATTTTTCTGTGAAACTTCATACTGCTGA
AGACATACACTAAGAATTGATGTAGATAATGTACTTTTATGAGATGTACAAGTAAGTGTC
TTATCTGTACAGATGTAAATGTTGATGAAAATGCAATTGGGATTAATATTTTAAGAATTC
TTCAGTATATTCTTGGGTGTGGCTATATTACAAAATGGGATGCTGGCAATGAAACAGCAC
ATTTAACACTATTGTATTTTTATTATATGTAATTTAGTAATATGAAGATAAATCTTGTAA
CTTTTAAAATTGTAATGGAGGCTGTAATCATTTTATAATCTTGTTTTTAATTTTAATGCA
AGTACACTGGTGTGTTTATAGTTGCACAGAGTATTGATATGTGATGTATTAAGTCACAAA
AGTAAGCTGTGACATTGTCAATATGCATTTGGCTCCACAACATCTTTTTTAAATGTATTT
GGATTGTTTTCTATGTGAAACAAACCAATTAACCCTTTGTTGTAGTAACTGGTCTTTTTA
TAATTAAGCAGAATCCTGTAAGATTGCTTGTCTGTGCTTAAAACAATACCTTTGAAAAAA
AATTGAATCACAGAATAGCGGTACCATGTTGTAACACTGCAGTTTTCTGAATTACAGTAT
GCACAAAGTATAAACTAGCATTATCAAAGTGTCCACACTCAACATTTCATATAATCACTT
ATAAGAACTATAACATTCCATAGAGTGAAGTGGTTCAAATTTCTAGTGGAACTTTTACTT
TTTGTGGGCCTTATGATCATTTTCATGTTTCTTTTGATTTAGAGTATTAACACATGGCCA
AAATGATTTAGTTACTACCTCATATATACAATATAATGGTTACTACACATCACAGGAACT
TAGTTGTGGTTAAAGTCACTTTTGATTGCGTTTTTCCAATGGAATATGTATATACCAAGT
TTTAGCAAAATACACACTTTTGGCTCTTTTTTGGTATGTGTTCTTTATATTTTAATGTGA
GTATATACACTAAGAACAAACTAAATTGTGATTTATAGTCTTTGTTTATTTTAATTGGCA
ATGCTTTTAAATATGTTCCTGATTGTACATAGTGTAAAATAAACATGTTTTTTAACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTAGAAAGAAAGAACACTACCACTGCAACATTAACGGATGCTTGAAGCTGTACAAAA
GCTGCAGTTACCTGGCTTCAGTTACTTGTAATTTATTGTGGCATGAGACAAGATGGGAAA
ATTTCTGTTTTAAGTGGTATGGATATAACTAGCATATTGAACCACACAAGTGCTTAACTC
ATTGTTATGTAATCTTTGTACATATAGGCAGTATTTTTCTGTGAAACTTCATACTGCTGA
AGACATACACTAAGAATTGATGTAGATAATGTACTTTTATGAGATGTACAAGTAAGTGTC
TTATCTGTACAGATGTAAATGTTGATGAAAATGCAATTGGGATTAATATTTTAAGAATTC
TTCAGTATATTCTTGGGTGTGGCTATATTACAAAATGGGATGCTGGCAATGAAACAGCAC
ATTTAACACTATTGTATTTTTATTATATGTAATTTAGTAATATGAAGATAAATCTTGTAA
CTTTTAAAATTGTAATGGAGGCTGTAATCATTTTATAATCTTGTTTTTAATTTTAATGCA
AGTACACTGGTGTGTTTATAGTTGCACAGAGTATTGATATGTGATGTATTAAGTCACAAA
AGTAAGCTGTGACATTGTCAATATGCATTTGGCTCCACAACATCTTTTTTAAATGTATTT
GGATTGTTTTCTATGTGAAACAAACCAATTAACCCTTTGTTGTAGTAACTGGTCTTTTTA
TAATTAAGCAGAATCCTGTAAGATTGCTTGTCTGTGCTTAAAACAATACCTTTGAAAAAA
AATTGAATCACAGAATAGCGGTACCATGTTGTAACACTGCAGTTTTCTGAATTACAGTAT
GCACAAAGTATAAACTAGCATTATCAAAGTGTCCACACTCAACATTTCATATAATCACTT
ATAAGAACTATAACATTCCATAGAGTGAAGTGGTTCAAATTTCTAGTGGAACTTTTACTT
TTTGTGGGCCTTATGATCATTTTCATGTTTCTTTTGATTTAGAGTATTAACACATGGCCA
AAATGATTTAGTTACTACCTCATATATACAATATAATGGTTACTACACATCACAGGAACT
TAGTTGTGGTTAAAGTCACTTTTGATTGCGTTTTTCCAATGGAATATGTATATACCAAGT
TTTAGCAAAATACACACTTTTGGCTCTTTTTTGGTATGTGTTCTTTATATTTTAATGTGA
GTATATACACTAAGAACAAACTAAATTGTGATTTATAGTCTTTGTTTATTTTAATTGGCA
ATGCTTTTAAATATGTTCCTGATTGTACATAGTGTAAAATAAACATGTTTTTTAACAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               558-677, - strand, RNAz p=0.847852

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               558-677, - strand, RNAz p=0.847852

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1317, gnl|bosTau2|chr11 (16493715-16492396)
               

               
               1-1317, gnl|Hg17|chr2 (39389386-39388073)
               

               
               1-1317, gnl|Mm7|chr17 (78877538-78876230)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1317, gnl|bosTau2|chr11 (16493715-16492396)
               

               
               1-1317, gnl|Hg17|chr2 (39389386-39388073)
               

               
               1-1317, gnl|Mm7|chr17 (78877538-78876230)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               kid (0.259471)
               

               
               ret (0.257467)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

	1-1317, gnl\|bosTau2\|chr11 (16493715-16492396)
	1-1317, gnl\|Hg17\|chr2 (39389386-39388073)
	1-1317, gnl\|Mm7\|chr17 (78877538-78876230)

	kid (0.259471)
	ret (0.257467)
	fco (0.157208)
	tbr (0.154178)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	ste (0.135208)
	tra (0.123092)