Ss1.1-Pig4-TMW8058M22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGGGAGGCGTCCGGGGCTCGGAGGCTCCGGTGGGCCTCGCGGTGATCCGGGCTCGGA CTCTCCCTGTGTGGGGCACGCGAGCCTTAATCGGACCCGGGGGCGACCCGCGGAGCGGCT GGTCCAGTCATGGCAGACTACTGGAAGTCACAACCAAAGAAATTCTGTGATTACTGCAAG TGCTGGATAGCAGACAATAGGCCTAGTGTCGAATTTCACGAAAGAGGAAAGAATCATAAG GAAAATGTGGCAAAAAGAATCAGCGAGATTAAACAGAAAAGCCTGGATAAGGCAAAGGAA GAAGAAAAGGCATCAAAGGAGTTTGCTGCAATGGAGGCCGCTGCCCTGAAAGCATACCAA GAGGATTTGAAAAGGCTTGGCTTAGAGTCAGAAATTTCAGAGCCAAGTGTATCACCAGTC ACCAGCACTACCCCACCCACCTCTGCATCAAATCAGCAGAAAGAGAAGAAGAAAAAGAAA AAAGACCCTTCCAAGGGCAGATGGGTAGAAGGCATAACTTCCGAGGGTTATCACTACTAC TATGATCTTATCACAGGAGCATCTCAGTGGGAGAAACCTGAAGGATTTCAAGGAAACTTA AAAAAGACGGCAGTGAAGGCTGTTTGGGTAGAAGGTTTAAGTGAAGATGGCTATACCTAT TATTATAACACAGAAACAGGAGAATAATACGACTCACTATAGGGAAAGCTGGTACGCCTG CAGGTACCGGTCCGGAATTCCCGGGTCGACCCACGCGTCCGGGAACTGAACCAGAAACAC AGAAAGGAAAAAAGACCCAAGGGCAGAATTCATCAGGTCCAAGTGAAGGAAAACCCAAGG CTCACAAAAAACCAAACCCTTATGGAGAGTGGCAAGAAATTAAGCAAGAAGTAGAGTCCC ATGAGGAGGTAGACTTGGAACTTCCAAGCACTGAAAATGAATACATGTCCACTTCAGAGG CTGATGGTGGTGGGGAAGCCAAAGTGGTTTTTAAAGAAAAAACCGTCACTTCTCTTGGCG TCGTGGCAGATGGAGTGGCCCCCGTCTTCAAAAAGAGAAGAATTGAAAATGGAAAATCTA GAAATTTAAGGCAACGAGGTGACGATCAATAATTGTAAAAAAGCTTTTCGGACACCCTTT TTGGACAGGATGGAGACTCTACATCTTAAAAGCTCCTCCGTGTTTACTGTACAGTATCTC AAAGGCCAAAAATTTAGACTGACTCTAAATGTATTTTATGTGAATTTAAAATAAATCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGGGAGGCGTCCGGGGCTCGGAGGCTCCGGTGGGCCTCGCGGTGATCCGGGCTCGGA CTCTCCCTGTGTGGGGCACGCGAGCCTTAATCGGACCCGGGGGCGACCCGCGGAGCGGCT GGTCCAGTCATGGCAGACTACTGGAAGTCACAACCAAAGAAATTCTGTGATTACTGCAAG TGCTGGATAGCAGACAATAGGCCTAGTGTCGAATTTCACGAAAGAGGAAAGAATCATAAG GAAAATGTGGCAAAAAGAATCAGCGAGATTAAACAGAAAAGCCTGGATAAGGCAAAGGAA GAAGAAAAGGCATCAAAGGAGTTTGCTGCAATGGAGGCCGCTGCCCTGAAAGCATACCAA GAGGATTTGAAAAGGCTTGGCTTAGAGTCAGAAATTTCAGAGCCAAGTGTATCACCAGTC ACCAGCACTACCCCACCCACCTCTGCATCAAATCAGCAGAAAGAGAAGAAGAAAAAGAAA AAAGACCCTTCCAAGGGCAGATGGGTAGAAGGCATAACTTCCGAGGGTTATCACTACTAC TATGATCTTATCACAGGAGCATCTCAGTGGGAGAAACCTGAAGGATTTCAAGGAAACTTA AAAAAGACGGCAGTGAAGGCTGTTTGGGTAGAAGGTTTAAGTGAAGATGGCTATACCTAT TATTATAACACAGAAACAGGAGAATAATACGACTCACTATAGGGAAAGCTGGTACGCCTG CAGGTACCGGTCCGGAATTCCCGGGTCGACCCACGCGTCCGGGAACTGAACCAGAAACAC AGAAAGGAAAAAAGACCCAAGGGCAGAATTCATCAGGTCCAAGTGAAGGAAAACCCAAGG CTCACAAAAAACCAAACCCTTATGGAGAGTGGCAAGAAATTAAGCAAGAAGTAGAGTCCC ATGAGGAGGTAGACTTGGAACTTCCAAGCACTGAAAATGAATACATGTCCACTTCAGAGG CTGATGGTGGTGGGGAAGCCAAAGTGGTTTTTAAAGAAAAAACCGTCACTTCTCTTGGCG TCGTGGCAGATGGAGTGGCCCCCGTCTTCAAAAAGAGAAGAATTGAAAATGGAAAATCTA GAAATTTAAGGCAACGAGGTGACGATCAATAATTGTAAAAAAGCTTTTCGGACACCCTTT TTGGACAGGATGGAGACTCTACATCTTAAAAGCTCCTCCGTGTTTACTGTACAGTATCTC AAAGGCCAAAAATTTAGACTGACTCTAAATGTATTTTATGTGAATTTAAAATAAATCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 427-539, - strand, RNAz p=0.998919 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 427-539, - strand, RNAz p=0.998919 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 18-669, gnl|bosTau2|chr18 (56401605-56402238) | |
| 18-669, gnl|Hg17|chr13 (40534775-40544979) | |
| 390-559, gnl|bosTau2|chr12 (2989388-2989557) | |
| 390-559, gnl|canFam2|chr22 (12505060-12504916) | |
| 390-559, gnl|echTel1|scaffold_206551 (4318-4170) | |
| 390-559, gnl|hg17|chr13 (40540659-40540814) | |
| 390-559, gnl|Hg17|chr13 (40540695-40540873) | |
| 390-559, gnl|mm7|chr14 (74153235-74153102) | |
| 390-559, gnl|Mm7|chr14 (74153216-74153041) | |
| 390-559, gnl|monDom2|scaffold_64 (2768426-2768582) | |
| 390-559, gnl|oryCun1|scaffold_81231 (5279-5130) | |
| 390-559, gnl|panTro1|chr14_random (10344284-10344129) | |
| 390-559, gnl|rheMac2|chr17 (20087278-20087431) | |
| 390-559, gnl|rn3|chr15 (61551294-61551153) | |
| 390-559, gnl|xenTro1|scaffold_381 (286677-286845) | |
| 897-1260, gnl|bosTau2|chr12 (3005848-3006211) | |
| 897-1260, gnl|canFam2|chr22 (12452649-12451955) | |
| 897-1260, gnl|dasNov1|scaffold_42080 (39204-39891) | |
| 897-1260, gnl|echTel1|scaffold_10781 (1146-464) | |
| 897-1260, gnl|galGal2|chr1 (158028062-158028730) | |
| 897-1260, gnl|hg17|chr13 (40554829-40555526) | |
| 897-1260, gnl|Hg17|chr13 (40554835-40555195) | |
| 897-1260, gnl|loxAfr1|scaffold_11294 (9720-9036) | |
| 897-1260, gnl|mm7|chr14 (74142832-74142140) | |
| 897-1260, gnl|Mm7|chr14 (74142823-74142447) | |
| 897-1260, gnl|monDom2|scaffold_64 (2793343-2794062) | |
| 897-1260, gnl|oryCun1|scaffold_131281 (3854-4537) | |
| 897-1260, gnl|panTro1|chr14_random (10330107-10329424) | |
| 897-1260, gnl|rheMac2|chr17 (20102853-20103535) | |
| 897-1260, gnl|rn3|chr15 (61533526-61532876) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-669, gnl|bosTau2|chr18 (56401605-56402238) | |
| 18-669, gnl|Hg17|chr13 (40534775-40544979) | |
| 390-559, gnl|bosTau2|chr12 (2989388-2989557) | |
| 390-559, gnl|canFam2|chr22 (12505060-12504916) | |
| 390-559, gnl|echTel1|scaffold_206551 (4318-4170) | |
| 390-559, gnl|hg17|chr13 (40540659-40540814) | |
| 390-559, gnl|Hg17|chr13 (40540695-40540873) | |
| 390-559, gnl|mm7|chr14 (74153235-74153102) | |
| 390-559, gnl|Mm7|chr14 (74153216-74153041) | |
| 390-559, gnl|monDom2|scaffold_64 (2768426-2768582) | |
| 390-559, gnl|oryCun1|scaffold_81231 (5279-5130) | |
| 390-559, gnl|panTro1|chr14_random (10344284-10344129) | |
| 390-559, gnl|rheMac2|chr17 (20087278-20087431) | |
| 390-559, gnl|rn3|chr15 (61551294-61551153) | |
| 390-559, gnl|xenTro1|scaffold_381 (286677-286845) | |
| 897-1260, gnl|bosTau2|chr12 (3005848-3006211) | |
| 897-1260, gnl|canFam2|chr22 (12452649-12451955) | |
| 897-1260, gnl|dasNov1|scaffold_42080 (39204-39891) | |
| 897-1260, gnl|echTel1|scaffold_10781 (1146-464) | |
| 897-1260, gnl|galGal2|chr1 (158028062-158028730) | |
| 897-1260, gnl|hg17|chr13 (40554829-40555526) | |
| 897-1260, gnl|Hg17|chr13 (40554835-40555195) | |
| 897-1260, gnl|loxAfr1|scaffold_11294 (9720-9036) | |
| 897-1260, gnl|mm7|chr14 (74142832-74142140) | |
| 897-1260, gnl|Mm7|chr14 (74142823-74142447) | |
| 897-1260, gnl|monDom2|scaffold_64 (2793343-2794062) | |
| 897-1260, gnl|oryCun1|scaffold_131281 (3854-4537) | |
| 897-1260, gnl|panTro1|chr14_random (10330107-10329424) | |
| 897-1260, gnl|rheMac2|chr17 (20102853-20103535) | |
| 897-1260, gnl|rn3|chr15 (61533526-61532876) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ova (0.387397) | |
| clu (0.239292) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| pgl (0.118483) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.387397) | |
| clu (0.239292) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| pgl (0.118483) |