Ss1.1-Pig4-TMW8058M23.3
|
GAGAAACCAGTTGAATTTCAATAGTTTCCTTACAATCGCGCCTGGCTCAGGGCTGGGCGG
GGGAGTGGCCAGGTCCTCCCCACATTCCCAGGTCACAGGGTGGAAGCAGAAACAAAGTCG
AAGGCTAAGGCCACTATGTCCTGGACACAGCAACATGGAAGATCATGTTAATCAAGGATT
CGAAAGTCCCTCTCAACTCTGTGATCCTGCACTTAAAAAAATCAAAGGAACCAAACTAAG
ATGCCCGAGCCACAGCTCTCGGGACGATGCCCCCCTGTCCACTCGAGATGTTGCTGAGTC
CTTGATCAATCCCGGACCCAGTCACCACTTGGGGTCGTGAGGGAGGGTGACCTCTCGCCC
AATCCCATGCTCCTTGTTCGGCGTAGGTCCCAGAGATGTCCCCAGACGGTGGCCAGGGAA
CACCTGGTAGGCTGAAGCACCCGGTGGGGGGGAGAAGGGGTCACCTTCCCGCAAGTTAGG
GGAAGAACATAATTCTCTAGAAAAATCAGATTTGCCAAGAAGGGGTGCTGGTGCTGATCG
GTATGTCGATTCGGGGGTGAGTGGGAAGGAGGAGATAAGCTGGGGTGTGGCGCTGCGGGC
CTGGCCCTGCCAGCTTTCCTGGTGGCTGGTGCCAGGGGGCGCTCAAAGGTTGCTGAAGAG
TTCGTTTTTCTTGCTCCAGTCCATCTGCGGGGCCCGTTTGCTGCTGCGCTTCTGATGGGC
CCTCTCTTTGGCCACGGCCAGGGAGATGTTGAAGTCCAGGACGGGGTCGGAGGAGGAGGA
GGTAGATGAGGCTGCCGTGTCCTCTTTCTTGGGGCTGTCTTGGGAATTGAGCTCCTCACT
GGTGTCACTGGAGGTGGATCTGGCCAGGGTGGGCATGGGGCTCTCGGAGGCTGCCTCGGC
CGGGGCTTCCCCACTGTTCTCCTTCTGGATCTCGCCGTTGGTGAAGGGCTCGGGCAAGGG
ACCACTCAGGTGCTCCTGAGACGGGATCACTTTGCATTTCTTGAAGAACTCATCCGTCTC
CCTGTCCACCACCAGCAGCTTGGCCTCGTCCCCACCAGCCTTGATGGCAGATACCACATC
CCCGTGCTGCTTGCCCTCCACGCAGACCCCGTTCACCTCCACGATGCGGTCCTGGGCCCG
GAGCCCTGAGGCCTCAGCGGGCGAGTCTGGGTCCACTGCCCGGATGAACTGGCCTGGCTT
GGACTTGTCACTGTGCAGGTTGAAGCCATAGCCGTTGGGGCCCTTCTTCATGGCGCAGAG
CCGAGGCCGAAGCTCACGTGGCTCCTGACGGCTCTTCTCCGCCTCGTGCGGCTCCGGAGT
GGCGGCCGGCGGCTCATTTTCGCTGTCAGCCCCCTGCGCCTCGGTGGCGGCCGGCGGCTC
GGCCTGCCCGGGCCCTTCTTGGGCGCGTAGCATCTCCTCCCGGACCTGGACGCCCAACTT
CTGCAGCCGCTCGTCGGTCTCGGGGTCGACCACCAGCAGTCGCACGGCGTTAAGTGCGGC
CCGGATGCGGCTCACCACCTGCTGGTGGGTCTCCTTCTCCACGTTCTCGCCGTTCACCTC
CACTAGCCGGTCCCCGGCCAGCAGTCCCGACTTTTCGGCCGGCGAGCCGGGCTCCACCAG
CCGGATGAACTGGCCTACCTTGCCCTTTTCCCCGTGCAAGTGGAAGCCGTAGCCGTTCGG
ACCCTTCTCCAGGCAGCAGAGCCGGGGCAAGGGTGCCCCGGCCGCCGAGTCCGCGCTCAT
CTCGCCTTCAGCGGCGCGAAGCAGAGTTCGGAGACGGGATGGTCCAACCCTTTTCCCTAC
CCTGCGGGCGGGGGTGGCGAGAACGACAGCGGAGGGGAAACCTGGCGCCGCGGGACCTGA
GGAGAGAGCAGGTGTCCCGGGAGCCGGGGCGGCGAAATGCTGGGAGCAGAGTTCGCAACG
TTCAGACCAATCCCCGCCCCGCGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGAAACCAGTTGAATTTCAATAGTTTCCTTACAATCGCGCCTGGCTCAGGGCTGGGCGG
GGGAGTGGCCAGGTCCTCCCCACATTCCCAGGTCACAGGGTGGAAGCAGAAACAAAGTCG
AAGGCTAAGGCCACTATGTCCTGGACACAGCAACATGGAAGATCATGTTAATCAAGGATT
CGAAAGTCCCTCTCAACTCTGTGATCCTGCACTTAAAAAAATCAAAGGAACCAAACTAAG
ATGCCCGAGCCACAGCTCTCGGGACGATGCCCCCCTGTCCACTCGAGATGTTGCTGAGTC
CTTGATCAATCCCGGACCCAGTCACCACTTGGGGTCGTGAGGGAGGGTGACCTCTCGCCC
AATCCCATGCTCCTTGTTCGGCGTAGGTCCCAGAGATGTCCCCAGACGGTGGCCAGGGAA
CACCTGGTAGGCTGAAGCACCCGGTGGGGGGGAGAAGGGGTCACCTTCCCGCAAGTTAGG
GGAAGAACATAATTCTCTAGAAAAATCAGATTTGCCAAGAAGGGGTGCTGGTGCTGATCG
GTATGTCGATTCGGGGGTGAGTGGGAAGGAGGAGATAAGCTGGGGTGTGGCGCTGCGGGC
CTGGCCCTGCCAGCTTTCCTGGTGGCTGGTGCCAGGGGGCGCTCAAAGGTTGCTGAAGAG
TTCGTTTTTCTTGCTCCAGTCCATCTGCGGGGCCCGTTTGCTGCTGCGCTTCTGATGGGC
CCTCTCTTTGGCCACGGCCAGGGAGATGTTGAAGTCCAGGACGGGGTCGGAGGAGGAGGA
GGTAGATGAGGCTGCCGTGTCCTCTTTCTTGGGGCTGTCTTGGGAATTGAGCTCCTCACT
GGTGTCACTGGAGGTGGATCTGGCCAGGGTGGGCATGGGGCTCTCGGAGGCTGCCTCGGC
CGGGGCTTCCCCACTGTTCTCCTTCTGGATCTCGCCGTTGGTGAAGGGCTCGGGCAAGGG
ACCACTCAGGTGCTCCTGAGACGGGATCACTTTGCATTTCTTGAAGAACTCATCCGTCTC
CCTGTCCACCACCAGCAGCTTGGCCTCGTCCCCACCAGCCTTGATGGCAGATACCACATC
CCCGTGCTGCTTGCCCTCCACGCAGACCCCGTTCACCTCCACGATGCGGTCCTGGGCCCG
GAGCCCTGAGGCCTCAGCGGGCGAGTCTGGGTCCACTGCCCGGATGAACTGGCCTGGCTT
GGACTTGTCACTGTGCAGGTTGAAGCCATAGCCGTTGGGGCCCTTCTTCATGGCGCAGAG
CCGAGGCCGAAGCTCACGTGGCTCCTGACGGCTCTTCTCCGCCTCGTGCGGCTCCGGAGT
GGCGGCCGGCGGCTCATTTTCGCTGTCAGCCCCCTGCGCCTCGGTGGCGGCCGGCGGCTC
GGCCTGCCCGGGCCCTTCTTGGGCGCGTAGCATCTCCTCCCGGACCTGGACGCCCAACTT
CTGCAGCCGCTCGTCGGTCTCGGGGTCGACCACCAGCAGTCGCACGGCGTTAAGTGCGGC
CCGGATGCGGCTCACCACCTGCTGGTGGGTCTCCTTCTCCACGTTCTCGCCGTTCACCTC
CACTAGCCGGTCCCCGGCCAGCAGTCCCGACTTTTCGGCCGGCGAGCCGGGCTCCACCAG
CCGGATGAACTGGCCTACCTTGCCCTTTTCCCCGTGCAAGTGGAAGCCGTAGCCGTTCGG
ACCCTTCTCCAGGCAGCAGAGCCGGGGCAAGGGTGCCCCGGCCGCCGAGTCCGCGCTCAT
CTCGCCTTCAGCGGCGCGAAGCAGAGTTCGGAGACGGGATGGTCCAACCCTTTTCCCTAC
CCTGCGGGCGGGGGTGGCGAGAACGACAGCGGAGGGGAAACCTGGCGCCGCGGGACCTGA
GGAGAGAGCAGGTGTCCCGGGAGCCGGGGCGGCGAAATGCTGGGAGCAGAGTTCGCAACG
TTCAGACCAATCCCCGCCCCGCGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-442, gnl|bosTau2|chr19 (51902961-51903405) |
|
1-442, gnl|canFam2|chr9 (8661315-8660906) |
|
1-442, gnl|dasNov1|scaffold_168030 (663-1102) |
|
1-442, gnl|hg17|chr17 (70276548-70276988) |
|
1-442, gnl|Hg17|chr17 (70277083-70276619) |
|
1-442, gnl|loxAfr1|scaffold_9733 (575-1028) |
|
1-442, gnl|mm7|chr11 (115289718-115290129) |
|
1-442, gnl|Mm7|chr11 (115290216-115289762) |
|
1-442, gnl|monDom2|scaffold_18 (31886690-31887155) |
|
1-442, gnl|oryCun1|scaffold_113338 (540-932) |
|
1-442, gnl|panTro1|chr19 (73622080-73622523) |
|
1-442, gnl|rheMac2|chr16 (70041714-70042150) |
|
1-442, gnl|rn3|chr10 (105269065-105269472) |
| |
|
460-833, gnl|bosTau2|chr19 (51903458-51903811) |
|
460-833, gnl|Hg17|chr17 (70276563-70276200) |
|
460-833, gnl|Mm7|chr11 (115289733-115289358) |
| |
|
1115-1278, gnl|bosTau2|chr19 (51909118-51909281) |
|
1115-1278, gnl|Hg17|chr17 (70269909-70269746) |
|
1115-1278, gnl|Mm7|chr11 (115285559-115285396) |
| |
|
1281-1944, gnl|bosTau2|chr19 (51919366-51920055) |
|
1281-1944, gnl|Hg17|chr17 (70257019-70256369) |
|
1281-1944, gnl|Mm7|chr11 (115272994-115272393) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-442, gnl|bosTau2|chr19 (51902961-51903405) |
|
1-442, gnl|canFam2|chr9 (8661315-8660906) |
|
1-442, gnl|dasNov1|scaffold_168030 (663-1102) |
|
1-442, gnl|hg17|chr17 (70276548-70276988) |
|
1-442, gnl|Hg17|chr17 (70277083-70276619) |
|
1-442, gnl|loxAfr1|scaffold_9733 (575-1028) |
|
1-442, gnl|mm7|chr11 (115289718-115290129) |
|
1-442, gnl|Mm7|chr11 (115290216-115289762) |
|
1-442, gnl|monDom2|scaffold_18 (31886690-31887155) |
|
1-442, gnl|oryCun1|scaffold_113338 (540-932) |
|
1-442, gnl|panTro1|chr19 (73622080-73622523) |
|
1-442, gnl|rheMac2|chr16 (70041714-70042150) |
|
1-442, gnl|rn3|chr10 (105269065-105269472) |
| |
|
460-833, gnl|bosTau2|chr19 (51903458-51903811) |
|
460-833, gnl|Hg17|chr17 (70276563-70276200) |
|
460-833, gnl|Mm7|chr11 (115289733-115289358) |
| |
|
1115-1278, gnl|bosTau2|chr19 (51909118-51909281) |
|
1115-1278, gnl|Hg17|chr17 (70269909-70269746) |
|
1115-1278, gnl|Mm7|chr11 (115285559-115285396) |
| |
|
1281-1944, gnl|bosTau2|chr19 (51919366-51920055) |
|
1281-1944, gnl|Hg17|chr17 (70257019-70256369) |
|
1281-1944, gnl|Mm7|chr11 (115272994-115272393) |
|
jej (1.3849) |
|
cje (0.826173) |
|
pty (0.713572) |
|
col (0.585023) |
|
med (0.58126) |
|
fty (0.527519) |
|
ill (0.526778) |
|
nje (0.49776) |
|
cly (0.482567) |
|
cag (0.453583) |
|
ton (0.351) |
|
nbm (0.297974) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
ute (0.265569) |
|
clu (0.239292) |
|
ecc (0.23007) |
|
cmu (0.186393) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
nco (0.161734) |
|
ctl (0.153069) |
|
cli (0.152812) |
|
cst (0.140036) |
|
cov (0.132153) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
jej (1.3849) |
|
cje (0.826173) |
|
pty (0.713572) |
|
col (0.585023) |
|
med (0.58126) |
|
fty (0.527519) |
|
ill (0.526778) |
|
nje (0.49776) |
|
cly (0.482567) |
|
cag (0.453583) |
|
ton (0.351) |
|
nbm (0.297974) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
ute (0.265569) |
|
clu (0.239292) |
|
ecc (0.23007) |
|
cmu (0.186393) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
nco (0.161734) |
|
ctl (0.153069) |
|
cli (0.152812) |
|
cst (0.140036) |
|
cov (0.132153) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
eje (0.0988338) |
