Non-Coding RNA Search

Ss1.1-Pig4-TMW8058N01.3

Sequence:


               
               GAGATTTGAAGGGATATAAGTGGCCAGGACACACACACACACCACCAGTTCCTCAGACTG
AACAAAGAGAACCTAAAAGTTGTTTTCCATTCTGTGCACTTGCCTTTGACTGTCCAGCAC
TGCTTGTGTTAGTCATGTAGTAAGAGATGTGCATTGAGCCCTTGTTGGTGGGCAAGCCTT
TAGCTAGACTTTAACTAGAATTACAGTCTAAAGGGGTACTTTTCTAATTTTAAGCTGAGA
ACAAATAGCACTGCTGAGTGGTAAGGCACGTTCAGTAAAGGTCTGATTCATTGTGTTGAT
TTGAAATTGGAATAGGACATCTGAGTCTCTGAATGAATGCTGTTTTGTCTATGAATAAAA
ATGTTATCTGACCTAAAAAGACTTTGTTATTTTGAAAAATGTTTGAGGTTCTCTCGAACT
CATCAACAGAGCAGACAAGCAGATCGTTTATTAGCTGCAGGGAAATACGAAGAGGCTATT
TCTTGTCACAAAAAGGCTGCAGCCTATCTTTCTGAAGCAATGAAGCTGACACAGTCTGAG
CAGGCTCATTTATCACTGGAACTGCAAAGGGAGAGCCACATGAAACAGCTCCTTCTCATC
CAGGAAAGGTGGAAGAGGGCCAAGCGGGAGGAAAGGCTGAAAGCCCAGCAGAGCTCAGAC
AAGGACGCAGCTGCCCAGCTTCAGGCATCTCACAAACCCTCTGCTGAGGATGCAGATGGC
GAGAGCCCCCTCCTCTCTCAGAGGTATAGCCCTTCCACAGAGAAGCACTTGCCTGAAATT
CAGGGGGTCTTTGACAGGGAGCCAGACACACTACTATTTTTACTTCAGCAGAAGAGTGAG
CCAACGGAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATTTGAAGGGATATAAGTGGCCAGGACACACACACACACCACCAGTTCCTCAGACTG
AACAAAGAGAACCTAAAAGTTGTTTTCCATTCTGTGCACTTGCCTTTGACTGTCCAGCAC
TGCTTGTGTTAGTCATGTAGTAAGAGATGTGCATTGAGCCCTTGTTGGTGGGCAAGCCTT
TAGCTAGACTTTAACTAGAATTACAGTCTAAAGGGGTACTTTTCTAATTTTAAGCTGAGA
ACAAATAGCACTGCTGAGTGGTAAGGCACGTTCAGTAAAGGTCTGATTCATTGTGTTGAT
TTGAAATTGGAATAGGACATCTGAGTCTCTGAATGAATGCTGTTTTGTCTATGAATAAAA
ATGTTATCTGACCTAAAAAGACTTTGTTATTTTGAAAAATGTTTGAGGTTCTCTCGAACT
CATCAACAGAGCAGACAAGCAGATCGTTTATTAGCTGCAGGGAAATACGAAGAGGCTATT
TCTTGTCACAAAAAGGCTGCAGCCTATCTTTCTGAAGCAATGAAGCTGACACAGTCTGAG
CAGGCTCATTTATCACTGGAACTGCAAAGGGAGAGCCACATGAAACAGCTCCTTCTCATC
CAGGAAAGGTGGAAGAGGGCCAAGCGGGAGGAAAGGCTGAAAGCCCAGCAGAGCTCAGAC
AAGGACGCAGCTGCCCAGCTTCAGGCATCTCACAAACCCTCTGCTGAGGATGCAGATGGC
GAGAGCCCCCTCCTCTCTCAGAGGTATAGCCCTTCCACAGAGAAGCACTTGCCTGAAATT
CAGGGGGTCTTTGACAGGGAGCCAGACACACTACTATTTTTACTTCAGCAGAAGAGTGAG
CCAACGGAGTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12006059|gb|AAG44735.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12006059|gb|AAG44735.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               621-779, - strand, RNAz p=0.858861

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               621-779, - strand, RNAz p=0.858861

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               74-423, gnl|bosTau2|chr28 (14243364-14243704)
               


               
               542-849, gnl|bosTau2|chr28 (14243841-14244137)
               

               
               542-849, gnl|canFam2|chr4 (18195999-18195624)
               

               
               542-849, gnl|danRer3|chrNA (164424946-164425237)
               

               
               542-849, gnl|dasNov1|scaffold_10452 (49835-49508)
               

               
               542-849, gnl|echTel1|scaffold_217338 (5593-5218)
               

               
               542-849, gnl|galGal2|chr6 (7356026-7356407)
               

               
               542-849, gnl|hg17|chr1 (111102955-111103327)
               

               
               542-849, gnl|Hg17|chr10 (64583275-64583579)
               

               
               542-849, gnl|loxAfr1|scaffold_25613 (26519-26144)
               

               
               542-849, gnl|Mm7|chr10 (66873079-66872775)
               

               
               542-849, gnl|mm7|chr14 (48118206-48118578)
               

               
               542-849, gnl|monDom2|scaffold_48 (3205726-3206099)
               

               
               542-849, gnl|oryCun1|scaffold_206285 (399-26)
               

               
               542-849, gnl|panTro1|chr1 (111181692-111181323)
               

               
               542-849, gnl|rheMac2|chr9 (74118251-74118623)
               

               
               542-849, gnl|rn3|chr2 (189543137-189543509)
               

               
               542-849, gnl|xenTro1|scaffold_808 (469567-469949)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-423, gnl|bosTau2|chr28 (14243364-14243704)
               


               
               542-849, gnl|bosTau2|chr28 (14243841-14244137)
               

               
               542-849, gnl|canFam2|chr4 (18195999-18195624)
               

               
               542-849, gnl|danRer3|chrNA (164424946-164425237)
               

               
               542-849, gnl|dasNov1|scaffold_10452 (49835-49508)
               

               
               542-849, gnl|echTel1|scaffold_217338 (5593-5218)
               

               
               542-849, gnl|galGal2|chr6 (7356026-7356407)
               

               
               542-849, gnl|hg17|chr1 (111102955-111103327)
               

               
               542-849, gnl|Hg17|chr10 (64583275-64583579)
               

               
               542-849, gnl|loxAfr1|scaffold_25613 (26519-26144)
               

               
               542-849, gnl|Mm7|chr10 (66873079-66872775)
               

               
               542-849, gnl|mm7|chr14 (48118206-48118578)
               

               
               542-849, gnl|monDom2|scaffold_48 (3205726-3206099)
               

               
               542-849, gnl|oryCun1|scaffold_206285 (399-26)
               

               
               542-849, gnl|panTro1|chr1 (111181692-111181323)
               

               
               542-849, gnl|rheMac2|chr9 (74118251-74118623)
               

               
               542-849, gnl|rn3|chr2 (189543137-189543509)
               

               
               542-849, gnl|xenTro1|scaffold_808 (469567-469949)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               spl (0.143184)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               spl (0.143184)
               

               
               jca (0.11396)

	74-423, gnl\|bosTau2\|chr28 (14243364-14243704)

	542-849, gnl\|bosTau2\|chr28 (14243841-14244137)
	542-849, gnl\|canFam2\|chr4 (18195999-18195624)
	542-849, gnl\|danRer3\|chrNA (164424946-164425237)
	542-849, gnl\|dasNov1\|scaffold_10452 (49835-49508)
	542-849, gnl\|echTel1\|scaffold_217338 (5593-5218)
	542-849, gnl\|galGal2\|chr6 (7356026-7356407)
	542-849, gnl\|hg17\|chr1 (111102955-111103327)
	542-849, gnl\|Hg17\|chr10 (64583275-64583579)
	542-849, gnl\|loxAfr1\|scaffold_25613 (26519-26144)
	542-849, gnl\|Mm7\|chr10 (66873079-66872775)
	542-849, gnl\|mm7\|chr14 (48118206-48118578)
	542-849, gnl\|monDom2\|scaffold_48 (3205726-3206099)
	542-849, gnl\|oryCun1\|scaffold_206285 (399-26)
	542-849, gnl\|panTro1\|chr1 (111181692-111181323)
	542-849, gnl\|rheMac2\|chr9 (74118251-74118623)
	542-849, gnl\|rn3\|chr2 (189543137-189543509)
	542-849, gnl\|xenTro1\|scaffold_808 (469567-469949)